data_YIC # _chem_comp.id YIC _chem_comp.name "(2S)-2-[[(2S)-1-(3-cyclopentylpropanoyl)piperidin-2-yl]carbonylamino]-3-phenyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H32 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-08 _chem_comp.pdbx_modified_date 2020-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.511 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YIC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6L1B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YIC O15 O1 O 0 1 N N N -10.815 6.634 22.850 -0.321 0.242 0.457 O15 YIC 1 YIC C14 C1 C 0 1 N N N -11.385 5.864 23.622 -0.939 1.172 -0.016 C14 YIC 2 YIC C16 C2 C 0 1 N N N -11.070 4.389 23.564 -2.441 1.219 0.108 C16 YIC 3 YIC C17 C3 C 0 1 N N N -9.985 4.055 22.521 -2.929 -0.015 0.869 C17 YIC 4 YIC C18 C4 C 0 1 N N N -10.659 3.522 21.254 -4.453 0.033 0.996 C18 YIC 5 YIC C22 C5 C 0 1 N N N -9.669 3.030 20.179 -4.963 -1.161 1.828 C22 YIC 6 YIC C21 C6 C 0 1 N N N -10.499 3.068 18.868 -6.283 -1.616 1.180 C21 YIC 7 YIC C20 C7 C 0 1 N N N -11.752 3.931 19.143 -6.528 -0.682 -0.023 C20 YIC 8 YIC C19 C8 C 0 1 N N N -11.564 4.529 20.558 -5.118 -0.154 -0.391 C19 YIC 9 YIC N13 N1 N 0 1 N N N -12.296 6.279 24.545 -0.284 2.165 -0.649 N13 YIC 10 YIC C12 C9 C 0 1 N N N -12.868 5.475 25.633 -1.025 3.228 -1.342 C12 YIC 11 YIC C11 C10 C 0 1 N N N -14.398 5.491 25.622 -0.541 4.586 -0.821 C11 YIC 12 YIC C10 C11 C 0 1 N N N -14.860 6.947 25.566 0.979 4.675 -0.976 C10 YIC 13 YIC C9 C12 C 0 1 N N N -14.262 7.807 24.475 1.643 3.575 -0.145 C9 YIC 14 YIC C7 C13 C 0 1 N N S -12.721 7.700 24.433 1.185 2.209 -0.653 C7 YIC 15 YIC C6 C14 C 0 1 N N N -12.111 8.601 25.468 1.727 1.128 0.246 C6 YIC 16 YIC O8 O2 O 0 1 N N N -12.626 9.686 25.621 1.459 1.132 1.429 O8 YIC 17 YIC N5 N2 N 0 1 N N N -11.005 8.144 26.101 2.509 0.157 -0.264 N5 YIC 18 YIC C1 C15 C 0 1 N N S -10.185 8.852 27.091 3.036 -0.895 0.609 C1 YIC 19 YIC C2 C16 C 0 1 N N N -8.805 8.245 27.250 4.306 -0.415 1.263 C2 YIC 20 YIC O4 O3 O 0 1 N N N -7.818 8.952 27.568 4.969 -1.217 2.111 O4 YIC 21 YIC O3 O4 O 0 1 N N N -8.747 7.043 27.041 4.728 0.692 1.024 O3 YIC 22 YIC C23 C17 C 0 1 N N N -10.904 8.663 28.408 3.330 -2.147 -0.219 C23 YIC 23 YIC C24 C18 C 0 1 Y N N -10.335 9.396 29.607 2.042 -2.697 -0.773 C24 YIC 24 YIC C29 C19 C 0 1 Y N N -10.459 10.778 29.724 1.581 -2.272 -2.005 C29 YIC 25 YIC C28 C20 C 0 1 Y N N -9.909 11.388 30.888 0.398 -2.777 -2.513 C28 YIC 26 YIC C27 C21 C 0 1 Y N N -9.342 10.591 31.900 -0.323 -3.708 -1.789 C27 YIC 27 YIC C26 C22 C 0 1 Y N N -9.219 9.195 31.769 0.138 -4.134 -0.557 C26 YIC 28 YIC C25 C23 C 0 1 Y N N -9.750 8.589 30.610 1.323 -3.632 -0.052 C25 YIC 29 YIC H1 H1 H 0 1 N N N -11.989 3.843 23.304 -2.732 2.119 0.650 H1 YIC 30 YIC H2 H2 H 0 1 N N N -10.718 4.065 24.554 -2.887 1.234 -0.886 H2 YIC 31 YIC H3 H3 H 0 1 N N N -9.306 3.291 22.927 -2.637 -0.915 0.327 H3 YIC 32 YIC H4 H4 H 0 1 N N N -9.413 4.963 22.280 -2.482 -0.029 1.863 H4 YIC 33 YIC H5 H5 H 0 1 N N N -11.280 2.663 21.546 -4.768 0.975 1.446 H5 YIC 34 YIC H6 H6 H 0 1 N N N -9.329 2.007 20.398 -4.236 -1.972 1.802 H6 YIC 35 YIC H7 H7 H 0 1 N N N -8.799 3.699 20.112 -5.140 -0.850 2.858 H7 YIC 36 YIC H8 H8 H 0 1 N N N -10.799 2.049 18.582 -6.194 -2.648 0.840 H8 YIC 37 YIC H9 H9 H 0 1 N N N -9.904 3.515 18.058 -7.101 -1.527 1.895 H9 YIC 38 YIC H10 H10 H 0 1 N N N -11.832 4.735 18.397 -6.957 -1.239 -0.857 H10 YIC 39 YIC H11 H11 H 0 1 N N N -12.658 3.308 19.110 -7.180 0.144 0.261 H11 YIC 40 YIC H12 H12 H 0 1 N N N -11.085 5.518 20.506 -5.187 0.796 -0.921 H12 YIC 41 YIC H13 H13 H 0 1 N N N -12.529 4.616 21.079 -4.572 -0.889 -0.983 H13 YIC 42 YIC H14 H14 H 0 1 N N N -12.524 4.436 25.524 -0.841 3.162 -2.414 H14 YIC 43 YIC H15 H15 H 0 1 N N N -12.517 5.879 26.594 -2.091 3.118 -1.146 H15 YIC 44 YIC H16 H16 H 0 1 N N N -14.782 5.013 26.535 -1.013 5.384 -1.394 H16 YIC 45 YIC H17 H17 H 0 1 N N N -14.770 4.948 24.740 -0.807 4.688 0.231 H17 YIC 46 YIC H18 H18 H 0 1 N N N -14.612 7.413 26.531 1.245 4.549 -2.025 H18 YIC 47 YIC H19 H19 H 0 1 N N N -15.951 6.946 25.429 1.322 5.650 -0.628 H19 YIC 48 YIC H20 H20 H 0 1 N N N -14.540 8.856 24.657 2.726 3.654 -0.237 H20 YIC 49 YIC H21 H21 H 0 1 N N N -14.667 7.483 23.505 1.358 3.686 0.901 H21 YIC 50 YIC H22 H22 H 0 1 N N N -12.401 8.067 23.447 1.546 2.057 -1.670 H22 YIC 51 YIC H23 H23 H 0 1 N N N -10.713 7.217 25.867 2.723 0.154 -1.211 H23 YIC 52 YIC H24 H24 H 0 1 N N N -10.107 9.922 26.847 2.299 -1.132 1.377 H24 YIC 53 YIC H25 H25 H 0 1 N N N -7.041 8.408 27.617 5.779 -0.865 2.506 H25 YIC 54 YIC H26 H26 H 0 1 N N N -11.942 9.001 28.272 3.999 -1.889 -1.041 H26 YIC 55 YIC H27 H27 H 0 1 N N N -10.896 7.588 28.640 3.805 -2.898 0.413 H27 YIC 56 YIC H28 H28 H 0 1 N N N -10.952 11.364 28.963 2.144 -1.544 -2.570 H28 YIC 57 YIC H29 H29 H 0 1 N N N -9.927 12.463 30.994 0.038 -2.444 -3.475 H29 YIC 58 YIC H30 H30 H 0 1 N N N -8.991 11.065 32.805 -1.247 -4.102 -2.185 H30 YIC 59 YIC H31 H31 H 0 1 N N N -8.733 8.605 32.532 -0.426 -4.861 0.009 H31 YIC 60 YIC H32 H32 H 0 1 N N N -9.710 7.516 30.490 1.685 -3.968 0.909 H32 YIC 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YIC C21 C20 SING N N 1 YIC C21 C22 SING N N 2 YIC C20 C19 SING N N 3 YIC C22 C18 SING N N 4 YIC C19 C18 SING N N 5 YIC C18 C17 SING N N 6 YIC C17 C16 SING N N 7 YIC O15 C14 DOUB N N 8 YIC C16 C14 SING N N 9 YIC C14 N13 SING N N 10 YIC C7 C9 SING N N 11 YIC C7 N13 SING N N 12 YIC C7 C6 SING N N 13 YIC C9 C10 SING N N 14 YIC N13 C12 SING N N 15 YIC C6 O8 DOUB N N 16 YIC C6 N5 SING N N 17 YIC C10 C11 SING N N 18 YIC C11 C12 SING N N 19 YIC N5 C1 SING N N 20 YIC O3 C2 DOUB N N 21 YIC C1 C2 SING N N 22 YIC C1 C23 SING N N 23 YIC C2 O4 SING N N 24 YIC C23 C24 SING N N 25 YIC C24 C29 DOUB Y N 26 YIC C24 C25 SING Y N 27 YIC C29 C28 SING Y N 28 YIC C25 C26 DOUB Y N 29 YIC C28 C27 DOUB Y N 30 YIC C26 C27 SING Y N 31 YIC C16 H1 SING N N 32 YIC C16 H2 SING N N 33 YIC C17 H3 SING N N 34 YIC C17 H4 SING N N 35 YIC C18 H5 SING N N 36 YIC C22 H6 SING N N 37 YIC C22 H7 SING N N 38 YIC C21 H8 SING N N 39 YIC C21 H9 SING N N 40 YIC C20 H10 SING N N 41 YIC C20 H11 SING N N 42 YIC C19 H12 SING N N 43 YIC C19 H13 SING N N 44 YIC C12 H14 SING N N 45 YIC C12 H15 SING N N 46 YIC C11 H16 SING N N 47 YIC C11 H17 SING N N 48 YIC C10 H18 SING N N 49 YIC C10 H19 SING N N 50 YIC C9 H20 SING N N 51 YIC C9 H21 SING N N 52 YIC C7 H22 SING N N 53 YIC N5 H23 SING N N 54 YIC C1 H24 SING N N 55 YIC O4 H25 SING N N 56 YIC C23 H26 SING N N 57 YIC C23 H27 SING N N 58 YIC C29 H28 SING N N 59 YIC C28 H29 SING N N 60 YIC C27 H30 SING N N 61 YIC C26 H31 SING N N 62 YIC C25 H32 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YIC InChI InChI 1.03 "InChI=1S/C23H32N2O4/c26-21(14-13-17-8-4-5-9-17)25-15-7-6-12-20(25)22(27)24-19(23(28)29)16-18-10-2-1-3-11-18/h1-3,10-11,17,19-20H,4-9,12-16H2,(H,24,27)(H,28,29)/t19-,20-/m0/s1" YIC InChIKey InChI 1.03 PJAVAHBDHYDQSB-PMACEKPBSA-N YIC SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H]2CCCCN2C(=O)CCC3CCCC3" YIC SMILES CACTVS 3.385 "OC(=O)[CH](Cc1ccccc1)NC(=O)[CH]2CCCCN2C(=O)CCC3CCCC3" YIC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](C(=O)O)NC(=O)[C@@H]2CCCCN2C(=O)CCC3CCCC3" YIC SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)O)NC(=O)C2CCCCN2C(=O)CCC3CCCC3" # _pdbx_chem_comp_identifier.comp_id YIC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-1-(3-cyclopentylpropanoyl)piperidin-2-yl]carbonylamino]-3-phenyl-propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YIC "Create component" 2019-10-08 PDBJ YIC "Initial release" 2020-09-30 RCSB ##