data_YID # _chem_comp.id YID _chem_comp.name "(6S)-1-(3-tert-butylphenyl)-6-{(5P)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H42 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-03 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.722 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YID _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FXE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YID C10 C1 C 0 1 Y N N N N N 18.898 25.527 -1.427 0.906 1.140 0.190 C10 YID 1 YID C13 C2 C 0 1 Y N N N N N 21.538 25.928 -2.324 2.788 -0.860 0.604 C13 YID 2 YID C15 C3 C 0 1 Y N N N N N 23.995 26.527 -1.956 4.955 -1.852 1.551 C15 YID 3 YID C20 C4 C 0 1 N N N N N N 23.967 27.021 -0.509 5.467 -0.661 2.320 C20 YID 4 YID C21 C5 C 0 1 Y N N N N N 20.466 26.325 -3.111 1.500 -1.026 1.094 C21 YID 5 YID C24 C6 C 0 1 N N N N N N 17.036 23.510 0.141 0.635 4.213 0.170 C24 YID 6 YID C26 C7 C 0 1 N N N N N N 15.766 23.938 2.270 2.363 3.571 -1.516 C26 YID 7 YID C28 C8 C 0 1 N N N N N N 17.076 25.859 1.041 -0.052 3.123 -1.971 C28 YID 8 YID C02 C9 C 0 1 N N N N N N 14.436 27.714 -4.478 -4.662 0.417 1.391 C02 YID 9 YID C03 C10 C 0 1 N N N N N N 13.939 26.375 -5.102 -5.052 1.172 2.629 C03 YID 10 YID C04 C11 C 0 1 N N N N N N 13.812 25.304 -4.104 -4.283 2.493 2.697 C04 YID 11 YID C05 C12 C 0 1 N N N N N N 15.107 25.045 -3.509 -2.797 2.203 2.453 C05 YID 12 YID C06 C13 C 0 1 N N S N N N 15.555 26.190 -2.690 -2.620 1.745 1.004 C06 YID 13 YID C07 C14 C 0 1 Y N N N N N 17.018 26.036 -2.401 -1.211 1.247 0.808 C07 YID 14 YID C09 C15 C 0 1 Y N N N N N 19.164 26.129 -2.625 0.549 -0.025 0.891 C09 YID 15 YID C11 C16 C 0 1 Y N N N N N 19.992 25.099 -0.639 2.197 1.290 -0.301 C11 YID 16 YID C12 C17 C 0 1 Y N N N N N 21.303 25.301 -1.093 3.130 0.300 -0.096 C12 YID 17 YID C14 C18 C 0 1 Y N N N N N 22.993 26.123 -2.766 3.803 -1.921 0.820 C14 YID 18 YID C18 C19 C 0 1 Y N N N N N 23.494 25.846 -4.057 3.807 -3.251 0.312 C18 YID 19 YID C19 C20 C 0 1 N N N N N N 22.766 25.317 -5.269 2.760 -3.886 -0.566 C19 YID 20 YID C23 C21 C 0 1 N N N N N N 16.698 24.969 -0.137 -0.356 3.242 -0.476 C23 YID 21 YID C25 C22 C 0 1 N N N N N N 16.097 22.908 1.185 2.060 3.690 -0.021 C25 YID 22 YID C27 C23 C 0 1 N N N N N N 16.342 25.358 2.314 1.373 2.600 -2.162 C27 YID 23 YID C30 C24 C 0 1 N N N N N N 15.084 24.355 4.424 4.685 4.110 -1.774 C30 YID 24 YID C32 C25 C 0 1 Y N N N N N 15.786 28.757 -2.644 -3.282 -0.133 -0.420 C32 YID 25 YID C33 C26 C 0 1 Y N N N N N 15.187 29.063 -1.383 -2.966 -1.474 -0.243 C33 YID 26 YID C34 C27 C 0 1 Y N N N N N 15.677 30.111 -0.603 -2.700 -2.270 -1.340 C34 YID 27 YID C35 C28 C 0 1 N N N N N N 15.005 30.464 0.717 -2.357 -3.725 -1.149 C35 YID 28 YID C36 C29 C 0 1 N N N N N N 13.485 30.605 0.530 -1.096 -3.843 -0.291 C36 YID 29 YID C37 C30 C 0 1 N N N N N N 15.698 31.641 1.394 -3.518 -4.435 -0.450 C37 YID 30 YID C38 C31 C 0 1 N N N N N N 15.262 29.285 1.663 -2.110 -4.373 -2.513 C38 YID 31 YID C39 C32 C 0 1 Y N N N N N 16.740 30.867 -1.121 -2.749 -1.733 -2.614 C39 YID 32 YID C40 C33 C 0 1 Y N N N N N 17.337 30.534 -2.349 -3.063 -0.398 -2.793 C40 YID 33 YID C41 C34 C 0 1 Y N N N N N 16.875 29.483 -3.142 -3.329 0.403 -1.700 C41 YID 34 YID N08 N1 N 0 1 Y N N N N N 17.983 26.389 -3.242 -0.757 0.107 1.239 N08 YID 35 YID N17 N2 N 0 1 Y N N N N N 24.805 26.093 -4.042 4.891 -3.810 0.762 N17 YID 36 YID N22 N3 N 0 1 Y N N N N N 17.543 25.465 -1.281 -0.230 1.925 0.154 N22 YID 37 YID N31 N4 N 0 1 N N N N N N 15.284 27.603 -3.302 -3.557 0.674 0.689 N31 YID 38 YID O01 O1 O 0 1 N N N N N N 14.253 28.792 -4.936 -5.387 -0.479 1.012 O01 YID 39 YID O16 O2 O 0 1 Y N N N N N 25.083 26.538 -2.779 5.541 -3.052 1.443 O16 YID 40 YID O29 O3 O 0 1 N N N N N N 15.541 23.362 3.551 3.694 3.083 -1.695 O29 YID 41 YID H1 H1 H 0 1 N N N N N N 24.964 27.390 -0.228 5.081 -0.693 3.339 H1 YID 42 YID H2 H2 H 0 1 N N N N N N 23.234 27.836 -0.414 6.556 -0.685 2.344 H2 YID 43 YID H3 H3 H 0 1 N N N N N N 23.682 26.192 0.156 5.135 0.256 1.834 H3 YID 44 YID H4 H4 H 0 1 N N N N N N 20.630 26.776 -4.078 1.236 -1.925 1.631 H4 YID 45 YID H5 H5 H 0 1 N N N N N N 16.945 22.938 -0.794 0.541 5.193 -0.299 H5 YID 46 YID H6 H6 H 0 1 N N N N N N 18.070 23.447 0.511 0.419 4.298 1.235 H6 YID 47 YID H7 H7 H 0 1 N N N N N N 14.731 24.174 1.981 2.270 4.551 -1.985 H7 YID 48 YID H8 H8 H 0 1 N N N N N N 18.163 25.815 1.202 -0.758 2.431 -2.431 H8 YID 49 YID H9 H9 H 0 1 N N N N N N 16.778 26.897 0.829 -0.146 4.103 -2.440 H9 YID 50 YID H10 H10 H 0 1 N N N N N N 12.956 26.545 -5.565 -6.122 1.377 2.605 H10 YID 51 YID H11 H11 H 0 1 N N N N N N 14.657 26.057 -5.872 -4.819 0.571 3.508 H11 YID 52 YID H12 H12 H 0 1 N N N N N N 13.104 25.614 -3.321 -4.654 3.174 1.932 H12 YID 53 YID H13 H13 H 0 1 N N N N N N 13.443 24.390 -4.592 -4.411 2.942 3.682 H13 YID 54 YID H14 H14 H 0 1 N N N N N N 15.037 24.152 -2.870 -2.214 3.107 2.624 H14 YID 55 YID H15 H15 H 0 1 N N N N N N 15.841 24.867 -4.309 -2.462 1.415 3.128 H15 YID 56 YID H16 H16 H 0 1 N N N N N N 15.019 26.149 -1.730 -2.801 2.587 0.336 H16 YID 57 YID H17 H17 H 0 1 N N N N N N 19.818 24.617 0.312 2.467 2.184 -0.844 H17 YID 58 YID H18 H18 H 0 1 N N N N N N 22.137 24.971 -0.491 4.135 0.422 -0.474 H18 YID 59 YID H19 H19 H 0 1 N N N N N N 23.479 25.180 -6.095 1.998 -4.354 0.058 H19 YID 60 YID H20 H20 H 0 1 N N N N N N 22.299 24.352 -5.024 2.298 -3.122 -1.191 H20 YID 61 YID H21 H21 H 0 1 N N N N N N 21.988 26.034 -5.571 3.225 -4.641 -1.199 H21 YID 62 YID H22 H22 H 0 1 N N N N N N 15.628 25.077 -0.370 -1.371 3.615 -0.340 H22 YID 63 YID H23 H23 H 0 1 N N N N N N 15.166 22.589 0.693 2.766 4.382 0.439 H23 YID 64 YID H24 H24 H 0 1 N N N N N N 16.583 22.037 1.649 2.154 2.711 0.447 H24 YID 65 YID H25 H25 H 0 1 N N N N N N 17.058 25.400 3.148 1.589 2.516 -3.227 H25 YID 66 YID H26 H26 H 0 1 N N N N N N 15.509 26.049 2.510 1.467 1.621 -1.693 H26 YID 67 YID H27 H27 H 0 1 N N N N N N 14.907 23.917 5.418 5.667 3.658 -1.909 H27 YID 68 YID H28 H28 H 0 1 N N N N N N 15.840 25.150 4.503 4.465 4.762 -2.619 H28 YID 69 YID H29 H29 H 0 1 N N N N N N 14.145 24.779 4.038 4.677 4.694 -0.853 H29 YID 70 YID H30 H30 H 0 1 N N N N N N 14.349 28.479 -1.031 -2.928 -1.894 0.751 H30 YID 71 YID H31 H31 H 0 1 N N N N N N 13.019 30.860 1.493 -1.272 -3.381 0.680 H31 YID 72 YID H32 H32 H 0 1 N N N N N N 13.278 31.402 -0.200 -0.848 -4.895 -0.153 H32 YID 73 YID H33 H33 H 0 1 N N N N N N 13.071 29.654 0.162 -0.269 -3.337 -0.790 H33 YID 74 YID H34 H34 H 0 1 N N N N N N 15.190 31.870 2.342 -4.417 -4.350 -1.061 H34 YID 75 YID H35 H35 H 0 1 N N N N N N 16.748 31.382 1.594 -3.270 -5.487 -0.312 H35 YID 76 YID H36 H36 H 0 1 N N N N N N 15.656 32.520 0.734 -3.694 -3.972 0.522 H36 YID 77 YID H37 H37 H 0 1 N N N N N N 14.795 29.488 2.638 -1.283 -3.868 -3.011 H37 YID 78 YID H38 H38 H 0 1 N N N N N N 14.830 28.369 1.233 -1.862 -5.426 -2.374 H38 YID 79 YID H39 H39 H 0 1 N N N N N N 16.346 29.151 1.796 -3.009 -4.289 -3.124 H39 YID 80 YID H40 H40 H 0 1 N N N N N N 17.105 31.719 -0.567 -2.540 -2.357 -3.470 H40 YID 81 YID H41 H41 H 0 1 N N N N N N 18.183 31.112 -2.691 -3.100 0.018 -3.789 H41 YID 82 YID H42 H42 H 0 1 N N N N N N 17.333 29.242 -4.090 -3.575 1.445 -1.841 H42 YID 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YID C19 C18 SING N N 1 YID C03 C02 SING N N 2 YID C03 C04 SING N N 3 YID O01 C02 DOUB N N 4 YID C02 N31 SING N N 5 YID C04 C05 SING N N 6 YID C18 N17 DOUB Y N 7 YID C18 C14 SING Y N 8 YID N17 O16 SING Y N 9 YID C05 C06 SING N N 10 YID N31 C06 SING N N 11 YID N31 C32 SING N N 12 YID N08 C09 SING Y N 13 YID N08 C07 DOUB Y N 14 YID C41 C32 DOUB Y N 15 YID C41 C40 SING Y N 16 YID C21 C09 DOUB Y N 17 YID C21 C13 SING Y N 18 YID O16 C15 SING Y N 19 YID C14 C13 SING N N 20 YID C14 C15 DOUB Y N 21 YID C06 C07 SING N N 22 YID C32 C33 SING Y N 23 YID C09 C10 SING Y N 24 YID C07 N22 SING Y N 25 YID C40 C39 DOUB Y N 26 YID C13 C12 DOUB Y N 27 YID C15 C20 SING N N 28 YID C10 N22 SING Y N 29 YID C10 C11 DOUB Y N 30 YID C33 C34 DOUB Y N 31 YID N22 C23 SING N N 32 YID C39 C34 SING Y N 33 YID C12 C11 SING Y N 34 YID C34 C35 SING N N 35 YID C23 C24 SING N N 36 YID C23 C28 SING N N 37 YID C24 C25 SING N N 38 YID C36 C35 SING N N 39 YID C35 C37 SING N N 40 YID C35 C38 SING N N 41 YID C28 C27 SING N N 42 YID C25 C26 SING N N 43 YID C26 C27 SING N N 44 YID C26 O29 SING N N 45 YID O29 C30 SING N N 46 YID C20 H1 SING N N 47 YID C20 H2 SING N N 48 YID C20 H3 SING N N 49 YID C21 H4 SING N N 50 YID C24 H5 SING N N 51 YID C24 H6 SING N N 52 YID C26 H7 SING N N 53 YID C28 H8 SING N N 54 YID C28 H9 SING N N 55 YID C03 H10 SING N N 56 YID C03 H11 SING N N 57 YID C04 H12 SING N N 58 YID C04 H13 SING N N 59 YID C05 H14 SING N N 60 YID C05 H15 SING N N 61 YID C06 H16 SING N N 62 YID C11 H17 SING N N 63 YID C12 H18 SING N N 64 YID C19 H19 SING N N 65 YID C19 H20 SING N N 66 YID C19 H21 SING N N 67 YID C23 H22 SING N N 68 YID C25 H23 SING N N 69 YID C25 H24 SING N N 70 YID C27 H25 SING N N 71 YID C27 H26 SING N N 72 YID C30 H27 SING N N 73 YID C30 H28 SING N N 74 YID C30 H29 SING N N 75 YID C33 H30 SING N N 76 YID C36 H31 SING N N 77 YID C36 H32 SING N N 78 YID C36 H33 SING N N 79 YID C37 H34 SING N N 80 YID C37 H35 SING N N 81 YID C37 H36 SING N N 82 YID C38 H37 SING N N 83 YID C38 H38 SING N N 84 YID C38 H39 SING N N 85 YID C39 H40 SING N N 86 YID C40 H41 SING N N 87 YID C41 H42 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YID SMILES ACDLabs 12.01 "Cc1noc(C)c1c1cc2nc(C3CCCC(=O)N3c3cc(ccc3)C(C)(C)C)n(C3CCC(OC)CC3)c2cc1" YID InChI InChI 1.06 "InChI=1S/C34H42N4O3/c1-21-32(22(2)41-36-21)23-13-18-29-28(19-23)35-33(38(29)25-14-16-27(40-6)17-15-25)30-11-8-12-31(39)37(30)26-10-7-9-24(20-26)34(3,4)5/h7,9-10,13,18-20,25,27,30H,8,11-12,14-17H2,1-6H3/t25-,27+,30-/m0/s1" YID InChIKey InChI 1.06 AITZELJGZIFAPE-NSROOHRNSA-N YID SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1CC[C@@H](CC1)n2c(nc3cc(ccc23)c4c(C)onc4C)[C@@H]5CCCC(=O)N5c6cccc(c6)C(C)(C)C" YID SMILES CACTVS 3.385 "CO[CH]1CC[CH](CC1)n2c(nc3cc(ccc23)c4c(C)onc4C)[CH]5CCCC(=O)N5c6cccc(c6)C(C)(C)C" YID SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3C4CCC(CC4)OC)[C@@H]5CCCC(=O)N5c6cccc(c6)C(C)(C)C" YID SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3C4CCC(CC4)OC)C5CCCC(=O)N5c6cccc(c6)C(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YID "SYSTEMATIC NAME" ACDLabs 12.01 "(6S)-1-(3-tert-butylphenyl)-6-{(5P)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one" YID "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(6~{S})-1-(3-~{tert}-butylphenyl)-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(4-methoxycyclohexyl)benzimidazol-2-yl]piperidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YID "Create component" 2023-02-03 RCSB YID "Initial release" 2024-02-07 RCSB #