data_YII # _chem_comp.id YII _chem_comp.name "3-[(3-aminophenyl)methyl]-5-methyl-7-[methyl(oxidanyl)-$l^{3}-sulfanyl]pyridazino[4,5-b]indol-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-06 _chem_comp.pdbx_modified_date 2023-05-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.437 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YII _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G2E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YII C2 C1 C 0 1 Y N N -0.079 0.196 -11.019 -0.359 -1.331 -0.199 C2 YII 1 YII O1 O1 O 0 1 N N N 1.450 -5.389 -13.903 -6.151 1.309 -0.577 O1 YII 2 YII C4 C2 C 0 1 Y N N 0.060 -2.327 -10.324 -2.760 -1.941 0.695 C4 YII 3 YII C7 C3 C 0 1 N N N -1.126 -5.576 -13.575 -6.036 1.208 2.069 C7 YII 4 YII C6 C4 C 0 1 Y N N 0.290 -3.817 -12.182 -4.390 -0.224 0.317 C6 YII 5 YII S S1 S 0 1 N N R 0.446 -5.507 -12.784 -6.048 0.354 0.469 S YII 6 YII C5 C5 C 0 1 Y N N 0.198 -3.614 -10.815 -4.051 -1.477 0.808 C5 YII 7 YII C8 C6 C 0 1 Y N N 0.237 -2.764 -13.080 -3.442 0.574 -0.285 C8 YII 8 YII C9 C7 C 0 1 Y N N 0.088 -1.476 -12.571 -2.132 0.122 -0.414 C9 YII 9 YII N N1 N 0 1 Y N N 0.023 -0.248 -13.242 -1.000 0.689 -0.962 N YII 10 YII C10 C8 C 0 1 N N N 0.031 -0.105 -14.695 -0.944 2.015 -1.581 C10 YII 11 YII C1 C9 C 0 1 Y N N -0.067 0.762 -12.293 0.071 -0.169 -0.840 C1 YII 12 YII C3 C10 C 0 1 Y N N 0.011 -1.240 -11.194 -1.789 -1.147 0.084 C3 YII 13 YII C11 C11 C 0 1 N N N -0.124 1.101 -9.944 0.559 -2.374 0.046 C11 YII 14 YII N1 N2 N 0 1 N N N -0.128 2.388 -10.049 1.804 -2.254 -0.323 N1 YII 15 YII N2 N3 N 0 1 N N N -0.099 2.914 -11.302 2.263 -1.101 -0.967 N2 YII 16 YII C C12 C 0 1 N N N -0.096 2.191 -12.486 1.429 -0.074 -1.226 C YII 17 YII O O2 O 0 1 N N N -0.120 2.777 -13.565 1.841 0.928 -1.788 O YII 18 YII C12 C13 C 0 1 N N N 0.026 4.377 -11.345 3.670 -1.007 -1.365 C12 YII 19 YII C13 C14 C 0 1 Y N N 1.454 4.833 -11.524 4.470 -0.399 -0.242 C13 YII 20 YII C18 C15 C 0 1 Y N N 2.322 4.914 -10.440 5.036 -1.213 0.722 C18 YII 21 YII C17 C16 C 0 1 Y N N 3.659 5.207 -10.626 5.771 -0.659 1.754 C17 YII 22 YII C16 C17 C 0 1 Y N N 4.160 5.428 -11.901 5.942 0.710 1.826 C16 YII 23 YII C15 C18 C 0 1 Y N N 3.306 5.384 -12.998 5.375 1.530 0.859 C15 YII 24 YII N3 N4 N 0 1 N N N 3.774 5.661 -14.258 5.550 2.914 0.924 N3 YII 25 YII C14 C19 C 0 1 Y N N 1.958 5.089 -12.793 4.642 0.970 -0.180 C14 YII 26 YII H H2 H 0 1 N N N -0.010 -2.164 -9.259 -2.499 -2.916 1.079 H YII 27 YII H3 H3 H 0 1 N N N -0.991 -5.517 -14.665 -7.028 1.614 2.272 H3 YII 28 YII H4 H4 H 0 1 N N N -1.625 -6.522 -13.318 -5.764 0.504 2.855 H4 YII 29 YII H2 H5 H 0 1 N N N -1.744 -4.732 -13.236 -5.310 2.021 2.042 H2 YII 30 YII H1 H6 H 0 1 N N N 0.234 -4.454 -10.137 -4.803 -2.090 1.281 H1 YII 31 YII H5 H7 H 0 1 N N N 0.309 -2.936 -14.144 -3.718 1.547 -0.664 H5 YII 32 YII H6 H8 H 0 1 N N N -0.029 0.961 -14.959 -0.697 2.760 -0.824 H6 YII 33 YII H8 H9 H 0 1 N N N 0.961 -0.531 -15.100 -0.180 2.021 -2.359 H8 YII 34 YII H7 H10 H 0 1 N N N -0.832 -0.637 -15.120 -1.912 2.252 -2.021 H7 YII 35 YII H9 H11 H 0 1 N N N -0.158 0.685 -8.948 0.230 -3.275 0.542 H9 YII 36 YII H11 H12 H 0 1 N N N -0.361 4.791 -10.402 4.052 -2.004 -1.585 H11 YII 37 YII H10 H13 H 0 1 N N N -0.573 4.757 -12.186 3.755 -0.381 -2.253 H10 YII 38 YII H17 H14 H 0 1 N N N 1.946 4.746 -9.442 4.905 -2.283 0.669 H17 YII 39 YII H16 H15 H 0 1 N N N 4.319 5.264 -9.773 6.212 -1.297 2.506 H16 YII 40 YII H15 H16 H 0 1 N N N 5.211 5.634 -12.041 6.516 1.142 2.632 H15 YII 41 YII H14 H17 H 0 1 N N N 4.756 5.848 -14.216 5.160 3.485 0.244 H14 YII 42 YII H13 H18 H 0 1 N N N 3.609 4.876 -14.855 6.062 3.304 1.650 H13 YII 43 YII H12 H19 H 0 1 N N N 1.290 5.059 -13.641 4.199 1.605 -0.933 H12 YII 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YII C10 N SING N N 1 YII N3 C15 SING N N 2 YII O1 S DOUB N N 3 YII C7 S SING N N 4 YII O C DOUB N N 5 YII N C9 SING Y N 6 YII N C1 SING Y N 7 YII C8 C9 DOUB Y N 8 YII C8 C6 SING Y N 9 YII C15 C14 DOUB Y N 10 YII C15 C16 SING Y N 11 YII C14 C13 SING Y N 12 YII S C6 SING N N 13 YII C9 C3 SING Y N 14 YII C C1 SING N N 15 YII C N2 SING N N 16 YII C1 C2 DOUB Y N 17 YII C6 C5 DOUB Y N 18 YII C16 C17 DOUB Y N 19 YII C13 C12 SING N N 20 YII C13 C18 DOUB Y N 21 YII C12 N2 SING N N 22 YII N2 N1 SING N N 23 YII C3 C2 SING Y N 24 YII C3 C4 DOUB Y N 25 YII C2 C11 SING N N 26 YII C5 C4 SING Y N 27 YII C17 C18 SING Y N 28 YII N1 C11 DOUB N N 29 YII C4 H SING N N 30 YII C7 H3 SING N N 31 YII C7 H4 SING N N 32 YII C7 H2 SING N N 33 YII C5 H1 SING N N 34 YII C8 H5 SING N N 35 YII C10 H6 SING N N 36 YII C10 H8 SING N N 37 YII C10 H7 SING N N 38 YII C11 H9 SING N N 39 YII C12 H11 SING N N 40 YII C12 H10 SING N N 41 YII C18 H17 SING N N 42 YII C17 H16 SING N N 43 YII C16 H15 SING N N 44 YII N3 H14 SING N N 45 YII N3 H13 SING N N 46 YII C14 H12 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YII SMILES ACDLabs 12.01 "CS(=O)c1cc2c(cc1)c1C=NN(Cc3cccc(N)c3)C(=O)c1n2C" YII InChI InChI 1.06 "InChI=1S/C19H18N4O2S/c1-22-17-9-14(26(2)25)6-7-15(17)16-10-21-23(19(24)18(16)22)11-12-4-3-5-13(20)8-12/h3-10H,11,20H2,1-2H3/t26-/m1/s1" YII InChIKey InChI 1.06 NJHOCORPIDXRKR-AREMUKBSSA-N YII SMILES_CANONICAL CACTVS 3.385 "Cn1c2cc(ccc2c3C=NN(Cc4cccc(N)c4)C(=O)c13)[S@@](C)=O" YII SMILES CACTVS 3.385 "Cn1c2cc(ccc2c3C=NN(Cc4cccc(N)c4)C(=O)c13)[S](C)=O" YII SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2c3c1C(=O)N(N=C3)Cc4cccc(c4)N)S(=O)C" YII SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2c3c1C(=O)N(N=C3)Cc4cccc(c4)N)S(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YII "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(3-aminophenyl)methyl]-7-[(R)-methanesulfinyl]-5-methyl-3,5-dihydro-4H-pyridazino[4,5-b]indol-4-one" YII "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(3-aminophenyl)methyl]-5-methyl-7-methylsulfinyl-pyridazino[4,5-b]indol-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YII "Create component" 2023-02-06 RCSB YII "Initial release" 2023-05-17 RCSB #