data_YIL # _chem_comp.id YIL _chem_comp.name "N~2~-{[3-(acetamidomethyl)phenyl]acetyl}-N-[(2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1,1-dihydroxypentan-2-yl]-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H41 N7 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-06 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 611.755 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YIL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G1V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YIL C30 C1 C 0 1 Y N N N N N -61.020 9.790 -6.228 5.119 1.516 1.592 C30 YIL 1 YIL C10 C2 C 0 1 Y N N N N N -57.032 8.349 1.839 -3.812 -1.692 1.180 C10 YIL 2 YIL C33 C3 C 0 1 N N N N N N -62.002 11.252 -9.631 8.062 -0.119 -0.117 C33 YIL 3 YIL C16 C4 C 0 1 Y N N N N N -59.602 4.570 2.847 -4.980 -4.046 -2.645 C16 YIL 4 YIL C17 C5 C 0 1 Y N N N N N -59.621 5.899 2.345 -5.185 -2.908 -1.924 C17 YIL 5 YIL C21 C6 C 0 1 N N N N N N -55.570 13.110 -2.155 -5.089 2.987 -0.975 C21 YIL 6 YIL C23 C7 C 0 1 N N N N N N -54.833 14.358 -4.182 -5.547 4.918 -2.429 C23 YIL 7 YIL C20 C8 C 0 1 N N N N N N -55.934 11.650 -1.855 -4.024 2.535 0.026 C20 YIL 8 YIL C28 C9 C 0 1 N N N N N N -59.511 9.506 -4.226 2.738 0.940 1.358 C28 YIL 9 YIL C29 C10 C 0 1 N N N N N N -59.821 9.030 -5.634 3.874 1.104 2.335 C29 YIL 10 YIL C31 C11 C 0 1 Y N N N N N -60.988 10.171 -7.573 5.980 0.553 1.100 C31 YIL 11 YIL C01 C12 C 0 1 N N N N N N -62.986 7.395 -0.076 1.683 -0.200 -1.782 C01 YIL 12 YIL C02 C13 C 0 1 N N N N N N -62.292 8.352 -1.100 1.733 -1.151 -0.585 C02 YIL 13 YIL C03 C14 C 0 1 N N N N N N -60.745 8.237 -0.873 0.458 -0.992 0.246 C03 YIL 14 YIL C04 C15 C 0 1 N N S N N N -59.939 9.134 -1.791 0.414 0.414 0.848 C04 YIL 15 YIL C05 C16 C 0 1 N N N N N N -58.466 8.994 -1.411 -0.897 0.613 1.564 C05 YIL 16 YIL C07 C17 C 0 1 N N S N N N -56.656 10.049 -0.040 -3.332 0.707 1.582 C07 YIL 17 YIL C08 C18 C 0 1 N N N N N N -56.596 9.765 1.432 -3.766 -0.610 2.228 C08 YIL 18 YIL C12 C19 C 0 1 Y N N N N N -58.421 6.607 2.273 -4.487 -2.691 -0.719 C12 YIL 19 YIL C13 C20 C 0 1 Y N N N N N -57.213 6.041 2.673 -3.584 -3.668 -0.285 C13 YIL 20 YIL C14 C21 C 0 1 Y N N N N N -57.210 4.710 3.165 -3.387 -4.825 -1.035 C14 YIL 21 YIL C15 C22 C 0 1 Y N N N N N -58.409 4.003 3.251 -4.082 -5.010 -2.209 C15 YIL 22 YIL C19 C23 C 0 1 N N N N N N -56.115 11.456 -0.316 -4.397 1.158 0.580 C19 YIL 23 YIL C32 C24 C 0 1 Y N N N N N -62.073 10.837 -8.148 7.123 0.930 0.420 C32 YIL 24 YIL C35 C25 C 0 1 N N N N N N -62.770 10.139 -11.863 8.365 -1.405 -2.164 C35 YIL 25 YIL C36 C26 C 0 1 N N N N N N -62.806 8.975 -12.843 7.956 -1.775 -3.567 C36 YIL 26 YIL C44 C27 C 0 1 Y N N N N N -63.189 11.152 -7.367 7.404 2.271 0.232 C44 YIL 27 YIL C45 C28 C 0 1 Y N N N N N -63.230 10.770 -6.026 6.543 3.234 0.724 C45 YIL 28 YIL C46 C29 C 0 1 Y N N N N N -62.144 10.092 -5.448 5.397 2.856 1.400 C46 YIL 29 YIL C48 C30 C 0 1 N N N N N N -62.776 9.810 -0.896 1.839 -2.594 -1.084 C48 YIL 30 YIL N06 N1 N 0 1 N N N N N N -58.037 10.015 -0.497 -2.057 0.513 0.886 N06 YIL 31 YIL N11 N2 N 0 1 Y N N N N N -58.331 7.940 1.795 -4.552 -1.654 0.138 N11 YIL 32 YIL N22 N3 N 0 1 N N N N N N -55.298 13.164 -3.564 -4.733 4.306 -1.506 N22 YIL 33 YIL N24 N4 N 0 1 N N N N N N -54.611 14.299 -5.550 -6.635 4.326 -2.833 N24 YIL 34 YIL N25 N5 N 0 1 N N N N N N -54.696 15.406 -3.490 -5.212 6.155 -2.927 N25 YIL 35 YIL N27 N6 N 0 1 N N N N N N -60.137 8.727 -3.151 1.518 0.573 1.798 N27 YIL 36 YIL N34 N7 N 0 1 N N N N N N -62.010 10.029 -10.600 7.664 -0.479 -1.480 N34 YIL 37 YIL O09 O1 O 0 1 N N N N N N -55.297 9.842 1.866 -5.062 -0.453 2.807 O09 YIL 38 YIL O26 O2 O 0 1 N N N N N N -57.723 8.114 -1.801 -0.908 0.864 2.751 O26 YIL 39 YIL O43 O3 O 0 1 N N N N N N -63.333 11.139 -12.101 9.324 -1.941 -1.651 O43 YIL 40 YIL O47 O4 O 0 1 N N N N N N -58.829 10.446 -3.949 2.922 1.138 0.175 O47 YIL 41 YIL S18 S1 S 0 1 Y N N N N N -55.987 7.175 2.439 -2.876 -3.119 1.231 S18 YIL 42 YIL H1 H1 H 0 1 N N N N N N -61.076 11.823 -9.793 9.078 0.274 -0.127 H1 YIL 43 YIL H2 H2 H 0 1 N N N N N N -62.870 11.888 -9.860 8.020 -1.003 0.519 H2 YIL 44 YIL H3 H3 H 0 1 N N N N N N -60.519 4.004 2.913 -5.522 -4.199 -3.566 H3 YIL 45 YIL H4 H4 H 0 1 N N N N N N -60.547 6.353 2.025 -5.887 -2.168 -2.279 H4 YIL 46 YIL H5 H5 H 0 1 N N N N N N -54.680 13.409 -1.581 -5.145 2.269 -1.794 H5 YIL 47 YIL H6 H6 H 0 1 N N N N N N -56.410 13.774 -1.901 -6.056 3.046 -0.476 H6 YIL 48 YIL H7 H7 H 0 1 N N N N N N -56.873 11.395 -2.368 -3.057 2.477 -0.473 H7 YIL 49 YIL H8 H8 H 0 1 N N N N N N -55.129 10.992 -2.214 -3.968 3.253 0.845 H8 YIL 50 YIL H9 H9 H 0 1 N N N N N N -60.056 7.956 -5.606 4.052 0.158 2.847 H9 YIL 51 YIL H10 H10 H 0 1 N N N N N N -58.940 9.196 -6.271 3.616 1.870 3.066 H10 YIL 52 YIL H11 H11 H 0 1 N N N N N N -60.117 9.949 -8.172 5.761 -0.494 1.247 H11 YIL 53 YIL H12 H12 H 0 1 N N N N N N -62.631 6.366 -0.236 0.816 -0.436 -2.398 H12 YIL 54 YIL H13 H13 H 0 1 N N N N N N -62.740 7.713 0.948 1.608 0.828 -1.426 H13 YIL 55 YIL H14 H14 H 0 1 N N N N N N -64.076 7.433 -0.220 2.592 -0.313 -2.374 H14 YIL 56 YIL H15 H15 H 0 1 N N N N N N -62.533 8.026 -2.122 2.600 -0.915 0.032 H15 YIL 57 YIL H16 H16 H 0 1 N N N N N N -60.442 7.194 -1.049 -0.413 -1.141 -0.392 H16 YIL 58 YIL H17 H17 H 0 1 N N N N N N -60.523 8.513 0.169 0.452 -1.730 1.048 H17 YIL 59 YIL H18 H18 H 0 1 N N N N N N -60.253 10.179 -1.650 0.510 1.153 0.053 H18 YIL 60 YIL H19 H19 H 0 1 N N N N N N -56.051 9.311 -0.587 -3.213 1.468 2.353 H19 YIL 61 YIL H21 H21 H 0 1 N N N N N N -56.284 4.247 3.471 -2.688 -5.576 -0.697 H21 YIL 62 YIL H22 H22 H 0 1 N N N N N N -58.405 2.995 3.640 -3.930 -5.907 -2.791 H22 YIL 63 YIL H23 H23 H 0 1 N N N N N N -55.144 11.581 0.186 -5.364 1.217 1.079 H23 YIL 64 YIL H24 H24 H 0 1 N N N N N N -56.825 12.204 0.067 -4.453 0.441 -0.238 H24 YIL 65 YIL H25 H25 H 0 1 N N N N N N -63.408 9.252 -13.721 7.998 -0.891 -4.203 H25 YIL 66 YIL H26 H26 H 0 1 N N N N N N -61.782 8.734 -13.163 8.635 -2.534 -3.955 H26 YIL 67 YIL H27 H27 H 0 1 N N N N N N -63.254 8.097 -12.354 6.939 -2.168 -3.557 H27 YIL 68 YIL H28 H28 H 0 1 N N N N N N -64.018 11.690 -7.801 8.297 2.566 -0.299 H28 YIL 69 YIL H29 H29 H 0 1 N N N N N N -64.101 10.997 -5.429 6.763 4.281 0.578 H29 YIL 70 YIL H30 H30 H 0 1 N N N N N N -62.175 9.805 -4.407 4.722 3.608 1.780 H30 YIL 71 YIL H31 H31 H 0 1 N N N N N N -63.862 9.863 -1.061 0.972 -2.830 -1.700 H31 YIL 72 YIL H32 H32 H 0 1 N N N N N N -62.545 10.133 0.130 2.747 -2.707 -1.676 H32 YIL 73 YIL H33 H33 H 0 1 N N N N N N -62.264 10.470 -1.612 1.874 -3.272 -0.231 H33 YIL 74 YIL H34 H34 H 0 1 N N N N N N -58.687 10.703 -0.175 -2.049 0.313 -0.063 H34 YIL 75 YIL H35 H35 H 0 1 N N N N N N -55.438 12.346 -4.122 -3.922 4.746 -1.205 H35 YIL 76 YIL H36 H36 H 0 1 N N N N N N -54.330 15.184 -5.922 -7.209 4.758 -3.484 H36 YIL 77 YIL H37 H37 H 0 1 N N N N N N -54.914 15.393 -2.514 -4.402 6.596 -2.626 H37 YIL 78 YIL H38 H38 H 0 1 N N N N N N -54.370 16.249 -3.918 -5.786 6.588 -3.578 H38 YIL 79 YIL H39 H39 H 0 1 N N N N N N -60.694 7.924 -3.364 1.371 0.415 2.743 H39 YIL 80 YIL H40 H40 H 0 1 N N N N N N -61.513 9.192 -10.372 6.897 -0.050 -1.891 H40 YIL 81 YIL H41 H41 H 0 1 N N N N N N -55.263 9.662 2.798 -5.749 -0.206 2.172 H41 YIL 82 YIL O1 O5 O 0 1 N Y N N N N -57.447 10.689 2.109 -2.830 -0.973 3.246 O1 YIL 83 YIL H20 H20 H 0 1 N Y N N N N -57.419 10.520 3.043 -1.927 -1.097 2.924 H20 YIL 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YIL C36 C35 SING N N 1 YIL O43 C35 DOUB N N 2 YIL C35 N34 SING N N 3 YIL N34 C33 SING N N 4 YIL C33 C32 SING N N 5 YIL C32 C31 DOUB Y N 6 YIL C32 C44 SING Y N 7 YIL C31 C30 SING Y N 8 YIL C44 C45 DOUB Y N 9 YIL C30 C29 SING N N 10 YIL C30 C46 DOUB Y N 11 YIL C45 C46 SING Y N 12 YIL C29 C28 SING N N 13 YIL N24 C23 DOUB N N 14 YIL C28 O47 DOUB N N 15 YIL C28 N27 SING N N 16 YIL C23 N22 SING N N 17 YIL C23 N25 SING N N 18 YIL N22 C21 SING N N 19 YIL N27 C04 SING N N 20 YIL C21 C20 SING N N 21 YIL C20 C19 SING N N 22 YIL O26 C05 DOUB N N 23 YIL C04 C05 SING N N 24 YIL C04 C03 SING N N 25 YIL C05 N06 SING N N 26 YIL C02 C48 SING N N 27 YIL C02 C03 SING N N 28 YIL C02 C01 SING N N 29 YIL N06 C07 SING N N 30 YIL C19 C07 SING N N 31 YIL C07 C08 SING N N 32 YIL C08 C10 SING N N 33 YIL C08 O09 SING N N 34 YIL N11 C10 DOUB Y N 35 YIL N11 C12 SING Y N 36 YIL C10 S18 SING Y N 37 YIL C12 C17 DOUB Y N 38 YIL C12 C13 SING Y N 39 YIL C17 C16 SING Y N 40 YIL S18 C13 SING Y N 41 YIL C13 C14 DOUB Y N 42 YIL C16 C15 DOUB Y N 43 YIL C14 C15 SING Y N 44 YIL C33 H1 SING N N 45 YIL C33 H2 SING N N 46 YIL C16 H3 SING N N 47 YIL C17 H4 SING N N 48 YIL C21 H5 SING N N 49 YIL C21 H6 SING N N 50 YIL C20 H7 SING N N 51 YIL C20 H8 SING N N 52 YIL C29 H9 SING N N 53 YIL C29 H10 SING N N 54 YIL C31 H11 SING N N 55 YIL C01 H12 SING N N 56 YIL C01 H13 SING N N 57 YIL C01 H14 SING N N 58 YIL C02 H15 SING N N 59 YIL C03 H16 SING N N 60 YIL C03 H17 SING N N 61 YIL C04 H18 SING N N 62 YIL C07 H19 SING N N 63 YIL C14 H21 SING N N 64 YIL C15 H22 SING N N 65 YIL C19 H23 SING N N 66 YIL C19 H24 SING N N 67 YIL C36 H25 SING N N 68 YIL C36 H26 SING N N 69 YIL C36 H27 SING N N 70 YIL C44 H28 SING N N 71 YIL C45 H29 SING N N 72 YIL C46 H30 SING N N 73 YIL C48 H31 SING N N 74 YIL C48 H32 SING N N 75 YIL C48 H33 SING N N 76 YIL N06 H34 SING N N 77 YIL N22 H35 SING N N 78 YIL N24 H36 SING N N 79 YIL N25 H37 SING N N 80 YIL N25 H38 SING N N 81 YIL N27 H39 SING N N 82 YIL N34 H40 SING N N 83 YIL O09 H41 SING N N 84 YIL C08 O1 SING N N 85 YIL O1 H20 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YIL SMILES ACDLabs 12.01 "CC(=O)NCc1cccc(c1)CC(=O)NC(CC(C)C)C(=O)NC(CCCNC(=N)N)C(O)(O)c1nc2ccccc2s1" YIL InChI InChI 1.06 "InChI=1S/C30H41N7O5S/c1-18(2)14-23(35-26(39)16-20-8-6-9-21(15-20)17-34-19(3)38)27(40)37-25(12-7-13-33-29(31)32)30(41,42)28-36-22-10-4-5-11-24(22)43-28/h4-6,8-11,15,18,23,25,41-42H,7,12-14,16-17H2,1-3H3,(H,34,38)(H,35,39)(H,37,40)(H4,31,32,33)/t23-,25-/m0/s1" YIL InChIKey InChI 1.06 PJRWAYIGCZNXHI-ZCYQVOJMSA-N YIL SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)Cc1cccc(CNC(C)=O)c1)C(=O)N[C@@H](CCCNC(N)=N)C(O)(O)c2sc3ccccc3n2" YIL SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)Cc1cccc(CNC(C)=O)c1)C(=O)N[CH](CCCNC(N)=N)C(O)(O)c2sc3ccccc3n2" YIL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NCCC[C@@H](C(c1nc2ccccc2s1)(O)O)NC(=O)[C@H](CC(C)C)NC(=O)Cc3cccc(c3)CNC(=O)C" YIL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CCCNC(=N)N)C(c1nc2ccccc2s1)(O)O)NC(=O)Cc3cccc(c3)CNC(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YIL "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-{[3-(acetamidomethyl)phenyl]acetyl}-N-[(2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1,1-dihydroxypentan-2-yl]-L-leucinamide" YIL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[2-[3-(acetamidomethyl)phenyl]ethanoylamino]-~{N}-[(2~{S})-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1,1-bis(oxidanyl)pentan-2-yl]-4-methyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YIL "Create component" 2023-02-06 RCSB YIL "Initial release" 2024-07-10 RCSB #