data_YJ1 # _chem_comp.id YJ1 _chem_comp.name "N-[(1r,4r)-4-(beta-alanylamino)cyclohexyl]-7-methyl-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-10 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.435 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJ1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJ1 C4 C1 C 0 1 Y N N -0.165 26.018 -14.422 -7.689 0.018 -0.181 C4 YJ1 1 YJ1 C5 C2 C 0 1 Y N N 0.498 26.989 -13.714 -6.779 1.029 -0.074 C5 YJ1 2 YJ1 C6 C3 C 0 1 Y N N 1.391 26.630 -12.677 -5.412 0.731 -0.000 C6 YJ1 3 YJ1 C7 C4 C 0 1 Y N N 1.594 25.271 -12.356 -4.988 -0.612 -0.037 C7 YJ1 4 YJ1 C10 C5 C 0 1 Y N N 2.211 27.379 -11.811 -4.248 1.528 0.113 C10 YJ1 5 YJ1 C15 C6 C 0 1 N N N 5.460 29.913 -9.136 1.434 -0.527 0.991 C15 YJ1 6 YJ1 C17 C7 C 0 1 N N N 6.073 30.607 -6.848 3.439 0.246 -0.284 C17 YJ1 7 YJ1 C21 C8 C 0 1 N N N 6.807 31.829 -4.837 5.819 -0.260 -0.155 C21 YJ1 8 YJ1 C24 C9 C 0 1 N N N 8.675 33.529 -4.754 8.162 -1.065 -0.044 C24 YJ1 9 YJ1 C1 C10 C 0 1 N N N 1.090 22.830 -12.756 -5.499 -3.067 -0.188 C1 YJ1 10 YJ1 C2 C11 C 0 1 Y N N 0.903 24.293 -13.082 -5.936 -1.625 -0.147 C2 YJ1 11 YJ1 C3 C12 C 0 1 Y N N 0.043 24.671 -14.111 -7.274 -1.307 -0.218 C3 YJ1 12 YJ1 N8 N1 N 0 1 Y N N 2.492 25.223 -11.330 -3.616 -0.612 0.051 N8 YJ1 13 YJ1 C9 C13 C 0 1 Y N N 2.851 26.503 -10.994 -3.176 0.694 0.142 C9 YJ1 14 YJ1 C11 C14 C 0 1 N N N 3.823 26.851 -9.945 -1.771 1.114 0.253 C11 YJ1 15 YJ1 O12 O1 O 0 1 N N N 4.519 25.955 -9.470 -1.494 2.296 0.328 O12 YJ1 16 YJ1 N13 N2 N 0 1 N N N 3.938 28.148 -9.556 -0.791 0.190 0.271 N13 YJ1 17 YJ1 C14 C15 C 0 1 N N N 4.921 28.590 -8.574 0.609 0.608 0.382 C14 YJ1 18 YJ1 C16 C16 C 0 1 N N N 6.626 30.383 -8.263 2.896 -0.090 1.106 C16 YJ1 19 YJ1 C18 C17 C 0 1 N N N 5.528 29.278 -6.276 2.614 1.381 -0.894 C18 YJ1 20 YJ1 C19 C18 C 0 1 N N N 4.368 28.777 -7.155 1.152 0.943 -1.009 C19 YJ1 21 YJ1 N20 N3 N 0 1 N N N 7.123 31.213 -6.001 4.839 0.664 -0.174 N20 YJ1 22 YJ1 O22 O2 O 0 1 N N N 5.650 31.881 -4.447 5.543 -1.439 -0.230 O22 YJ1 23 YJ1 C23 C19 C 0 1 N N N 7.901 32.448 -3.994 7.259 0.170 -0.042 C23 YJ1 24 YJ1 N25 N4 N 0 1 N N N 7.746 34.324 -5.576 9.565 -0.645 0.067 N25 YJ1 25 YJ1 H1 H1 H 0 1 N N N -0.844 26.293 -15.215 -8.743 0.250 -0.233 H1 YJ1 26 YJ1 H2 H2 H 0 1 N N N 0.337 28.031 -13.949 -7.111 2.056 -0.046 H2 YJ1 27 YJ1 H3 H3 H 0 1 N N N 2.312 28.454 -11.799 -4.217 2.607 0.167 H3 YJ1 28 YJ1 H4 H4 H 0 1 N N N 5.809 29.761 -10.168 1.047 -0.766 1.982 H4 YJ1 29 YJ1 H5 H5 H 0 1 N N N 4.663 30.671 -9.126 1.368 -1.408 0.353 H5 YJ1 30 YJ1 H6 H6 H 0 1 N N N 5.231 31.311 -6.921 3.372 -0.635 -0.922 H6 YJ1 31 YJ1 H7 H7 H 0 1 N N N 9.423 33.053 -5.405 7.906 -1.703 0.802 H7 YJ1 32 YJ1 H8 H8 H 0 1 N N N 9.182 34.189 -4.035 8.020 -1.617 -0.973 H8 YJ1 33 YJ1 H9 H9 H 0 1 N N N 1.920 22.424 -13.353 -5.461 -3.464 0.827 H9 YJ1 34 YJ1 H10 H10 H 0 1 N N N 1.320 22.719 -11.686 -6.211 -3.646 -0.777 H10 YJ1 35 YJ1 H11 H11 H 0 1 N N N 0.166 22.281 -12.992 -4.511 -3.135 -0.642 H11 YJ1 36 YJ1 H12 H12 H 0 1 N N N -0.472 23.910 -14.678 -8.008 -2.095 -0.303 H12 YJ1 37 YJ1 H13 H13 H 0 1 N N N 2.833 24.390 -10.894 -3.051 -1.400 0.050 H13 YJ1 38 YJ1 H14 H14 H 0 1 N N N 3.324 28.826 -9.959 -1.012 -0.753 0.211 H14 YJ1 39 YJ1 H15 H15 H 0 1 N N N 5.749 27.867 -8.533 0.675 1.489 1.020 H15 YJ1 40 YJ1 H16 H16 H 0 1 N N N 7.414 29.616 -8.242 2.962 0.791 1.745 H16 YJ1 41 YJ1 H17 H17 H 0 1 N N N 7.039 31.322 -8.659 3.484 -0.898 1.541 H17 YJ1 42 YJ1 H18 H18 H 0 1 N N N 5.166 29.442 -5.250 2.680 2.262 -0.256 H18 YJ1 43 YJ1 H19 H19 H 0 1 N N N 6.331 28.527 -6.266 3.001 1.620 -1.884 H19 YJ1 44 YJ1 H20 H20 H 0 1 N N N 3.554 29.517 -7.162 1.086 0.062 -1.647 H20 YJ1 45 YJ1 H21 H21 H 0 1 N N N 3.989 27.819 -6.769 0.564 1.752 -1.443 H21 YJ1 46 YJ1 H22 H22 H 0 1 N N N 8.079 31.167 -6.292 5.060 1.607 -0.114 H22 YJ1 47 YJ1 H23 H23 H 0 1 N N N 7.447 32.900 -3.100 7.515 0.809 -0.888 H23 YJ1 48 YJ1 H24 H24 H 0 1 N N N 8.603 31.658 -3.689 7.401 0.723 0.887 H24 YJ1 49 YJ1 H25 H25 H 0 1 N N N 8.256 35.028 -6.070 10.183 -1.443 0.068 H25 YJ1 50 YJ1 H26 H26 H 0 1 N N N 7.285 33.725 -6.231 9.809 -0.000 -0.670 H26 YJ1 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJ1 C4 C3 DOUB Y N 1 YJ1 C4 C5 SING Y N 2 YJ1 C3 C2 SING Y N 3 YJ1 C5 C6 DOUB Y N 4 YJ1 C2 C1 SING N N 5 YJ1 C2 C7 DOUB Y N 6 YJ1 C6 C7 SING Y N 7 YJ1 C6 C10 SING Y N 8 YJ1 C7 N8 SING Y N 9 YJ1 C10 C9 DOUB Y N 10 YJ1 N8 C9 SING Y N 11 YJ1 C9 C11 SING N N 12 YJ1 C11 N13 SING N N 13 YJ1 C11 O12 DOUB N N 14 YJ1 N13 C14 SING N N 15 YJ1 C15 C14 SING N N 16 YJ1 C15 C16 SING N N 17 YJ1 C14 C19 SING N N 18 YJ1 C16 C17 SING N N 19 YJ1 C19 C18 SING N N 20 YJ1 C17 C18 SING N N 21 YJ1 C17 N20 SING N N 22 YJ1 N20 C21 SING N N 23 YJ1 N25 C24 SING N N 24 YJ1 C21 O22 DOUB N N 25 YJ1 C21 C23 SING N N 26 YJ1 C24 C23 SING N N 27 YJ1 C4 H1 SING N N 28 YJ1 C5 H2 SING N N 29 YJ1 C10 H3 SING N N 30 YJ1 C15 H4 SING N N 31 YJ1 C15 H5 SING N N 32 YJ1 C17 H6 SING N N 33 YJ1 C24 H7 SING N N 34 YJ1 C24 H8 SING N N 35 YJ1 C1 H9 SING N N 36 YJ1 C1 H10 SING N N 37 YJ1 C1 H11 SING N N 38 YJ1 C3 H12 SING N N 39 YJ1 N8 H13 SING N N 40 YJ1 N13 H14 SING N N 41 YJ1 C14 H15 SING N N 42 YJ1 C16 H16 SING N N 43 YJ1 C16 H17 SING N N 44 YJ1 C18 H18 SING N N 45 YJ1 C18 H19 SING N N 46 YJ1 C19 H20 SING N N 47 YJ1 C19 H21 SING N N 48 YJ1 N20 H22 SING N N 49 YJ1 C23 H23 SING N N 50 YJ1 C23 H24 SING N N 51 YJ1 N25 H25 SING N N 52 YJ1 N25 H26 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJ1 SMILES ACDLabs 12.01 "NCCC(=O)NC1CCC(CC1)NC(=O)c1cc2cccc(C)c2[NH]1" YJ1 InChI InChI 1.03 "InChI=1S/C19H26N4O2/c1-12-3-2-4-13-11-16(23-18(12)13)19(25)22-15-7-5-14(6-8-15)21-17(24)9-10-20/h2-4,11,14-15,23H,5-10,20H2,1H3,(H,21,24)(H,22,25)/t14-,15-" YJ1 InChIKey InChI 1.03 AEUGFQSECICIPH-SHTZXODSSA-N YJ1 SMILES_CANONICAL CACTVS 3.385 "Cc1cccc2cc([nH]c12)C(=O)N[C@H]3CC[C@@H](CC3)NC(=O)CCN" YJ1 SMILES CACTVS 3.385 "Cc1cccc2cc([nH]c12)C(=O)N[CH]3CC[CH](CC3)NC(=O)CCN" YJ1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1[nH]c(c2)C(=O)NC3CCC(CC3)NC(=O)CCN" YJ1 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1[nH]c(c2)C(=O)NC3CCC(CC3)NC(=O)CCN" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YJ1 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1r,4r)-4-(beta-alanylamino)cyclohexyl]-7-methyl-1H-indole-2-carboxamide" YJ1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[4-(3-azanylpropanoylamino)cyclohexyl]-7-methyl-1~{H}-indole-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJ1 "Create component" 2021-03-10 RCSB YJ1 "Initial release" 2021-09-22 RCSB ##