data_YJ5 # _chem_comp.id YJ5 _chem_comp.name "4-[(N-butylpentanamido)methyl]-N-hydroxybenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H26 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-06 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 306.400 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJ5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G20 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJ5 C10 C1 C 0 1 N N N N N N 11.586 17.331 2.293 1.970 0.659 -0.650 C10 YJ5 1 YJ5 C03 C2 C 0 1 N N N N N N 12.588 17.466 -4.716 -4.771 -0.028 0.504 C03 YJ5 2 YJ5 C04 C3 C 0 1 Y N N N N N 12.301 16.898 -3.322 -3.415 -0.298 -0.020 C04 YJ5 3 YJ5 C05 C4 C 0 1 Y N N N N N 12.029 17.777 -2.293 -2.766 0.655 -0.807 C05 YJ5 4 YJ5 C06 C5 C 0 1 Y N N N N N 11.823 17.286 -1.020 -1.501 0.398 -1.292 C06 YJ5 5 YJ5 C07 C6 C 0 1 Y N N N N N 11.845 15.924 -0.763 -0.876 -0.802 -1.002 C07 YJ5 6 YJ5 C08 C7 C 0 1 N N N N N N 11.591 15.393 0.661 0.507 -1.076 -1.536 C08 YJ5 7 YJ5 C11 C8 C 0 1 N N N N N N 10.701 18.393 3.011 2.992 1.148 0.344 C11 YJ5 8 YJ5 C12 C9 C 0 1 N N N N N N 11.141 18.612 4.465 3.344 2.605 0.040 C12 YJ5 9 YJ5 C13 C10 C 0 1 N N N N N N 11.228 17.235 5.130 4.381 3.101 1.049 C13 YJ5 10 YJ5 C14 C11 C 0 1 N N N N N N 9.862 16.571 5.158 4.732 4.559 0.745 C14 YJ5 11 YJ5 C16 C12 C 0 1 N N N N N N 9.448 16.594 1.137 1.997 -1.503 0.474 C16 YJ5 12 YJ5 C17 C13 C 0 1 N N N N N N 8.716 15.317 1.525 3.224 -2.259 -0.039 C17 YJ5 13 YJ5 C18 C14 C 0 1 N N N N N N 7.323 15.418 0.913 3.738 -3.198 1.054 C18 YJ5 14 YJ5 C19 C15 C 0 1 N N N N N N 7.010 16.838 0.419 4.965 -3.954 0.541 C19 YJ5 15 YJ5 C20 C16 C 0 1 Y N N N N N 12.113 15.033 -1.781 -1.514 -1.751 -0.223 C20 YJ5 16 YJ5 C21 C17 C 0 1 Y N N N N N 12.343 15.533 -3.069 -2.777 -1.503 0.274 C21 YJ5 17 YJ5 N02 N1 N 0 1 N N N N N N 13.737 16.930 -5.433 -5.385 1.137 0.218 N02 YJ5 18 YJ5 N09 N2 N 0 1 N N N N N N 10.889 16.432 1.407 1.505 -0.603 -0.573 N09 YJ5 19 YJ5 O01 O1 O 0 1 N N N N N N 14.133 17.369 -6.691 -6.684 1.395 0.720 O01 YJ5 20 YJ5 O15 O2 O 0 1 N N N N N N 12.754 17.167 2.493 1.563 1.404 -1.516 O15 YJ5 21 YJ5 O22 O3 O 0 1 N N N N N N 11.954 18.347 -5.181 -5.332 -0.858 1.193 O22 YJ5 22 YJ5 H1 H1 H 0 1 N N N N N N 11.978 18.839 -2.482 -3.253 1.592 -1.034 H1 YJ5 23 YJ5 H2 H2 H 0 1 N N N N N N 11.641 17.976 -0.209 -0.997 1.134 -1.901 H2 YJ5 24 YJ5 H3 H3 H 0 1 N N N N N N 10.974 14.483 0.616 0.631 -2.148 -1.690 H3 YJ5 25 YJ5 H4 H4 H 0 1 N N N N N N 12.549 15.163 1.151 0.641 -0.554 -2.483 H4 YJ5 26 YJ5 H5 H5 H 0 1 N N N N N N 10.778 19.347 2.468 2.583 1.075 1.352 H5 YJ5 27 YJ5 H6 H6 H 0 1 N N N N N N 9.656 18.050 3.003 3.891 0.535 0.272 H6 YJ5 28 YJ5 H7 H7 H 0 1 N N N N N N 12.124 19.104 4.490 3.753 2.678 -0.967 H7 YJ5 29 YJ5 H8 H8 H 0 1 N N N N N N 10.404 19.237 4.991 2.445 3.218 0.112 H8 YJ5 30 YJ5 H9 H9 H 0 1 N N N N N N 11.927 16.602 4.563 3.971 3.029 2.057 H9 YJ5 31 YJ5 H10 H10 H 0 1 N N N N N N 11.594 17.353 6.160 5.280 2.488 0.978 H10 YJ5 32 YJ5 H11 H11 H 0 1 N N N N N N 9.943 15.585 5.638 5.471 4.912 1.464 H11 YJ5 33 YJ5 H12 H12 H 0 1 N N N N N N 9.161 17.199 5.727 5.142 4.631 -0.262 H12 YJ5 34 YJ5 H13 H13 H 0 1 N N N N N N 9.493 16.449 4.129 3.834 5.172 0.817 H13 YJ5 35 YJ5 H14 H14 H 0 1 N N N N N N 9.056 17.436 1.727 1.215 -2.215 0.738 H14 YJ5 36 YJ5 H15 H15 H 0 1 N N N N N N 9.295 16.794 0.066 2.270 -0.921 1.354 H15 YJ5 37 YJ5 H16 H16 H 0 1 N N N N N N 8.646 15.236 2.620 2.951 -2.841 -0.919 H16 YJ5 38 YJ5 H17 H17 H 0 1 N N N N N N 9.245 14.439 1.126 4.006 -1.546 -0.303 H17 YJ5 39 YJ5 H18 H18 H 0 1 N N N N N N 6.580 15.135 1.674 4.011 -2.616 1.934 H18 YJ5 40 YJ5 H19 H19 H 0 1 N N N N N N 7.258 14.724 0.062 2.956 -3.910 1.318 H19 YJ5 41 YJ5 H20 H20 H 0 1 N N N N N N 5.999 16.862 -0.013 4.692 -4.536 -0.339 H20 YJ5 42 YJ5 H21 H21 H 0 1 N N N N N N 7.065 17.540 1.264 5.747 -3.242 0.278 H21 YJ5 43 YJ5 H22 H22 H 0 1 N N N N N N 7.743 17.129 -0.348 5.331 -4.623 1.320 H22 YJ5 44 YJ5 H23 H23 H 0 1 N N N N N N 12.145 13.971 -1.589 -1.020 -2.685 0.000 H23 YJ5 45 YJ5 H24 H24 H 0 1 N N N N N N 12.556 14.848 -3.876 -3.272 -2.243 0.886 H24 YJ5 46 YJ5 H25 H25 H 0 1 N N N N N N 14.271 16.206 -4.996 -4.937 1.799 -0.332 H25 YJ5 47 YJ5 H26 H26 H 0 1 N N N N N N 13.553 18.063 -6.982 -7.042 2.256 0.462 H26 YJ5 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJ5 O01 N02 SING N N 1 YJ5 N02 C03 SING N N 2 YJ5 O22 C03 DOUB N N 3 YJ5 C03 C04 SING N N 4 YJ5 C04 C21 DOUB Y N 5 YJ5 C04 C05 SING Y N 6 YJ5 C21 C20 SING Y N 7 YJ5 C05 C06 DOUB Y N 8 YJ5 C20 C07 DOUB Y N 9 YJ5 C06 C07 SING Y N 10 YJ5 C07 C08 SING N N 11 YJ5 C19 C18 SING N N 12 YJ5 C08 N09 SING N N 13 YJ5 C18 C17 SING N N 14 YJ5 C16 N09 SING N N 15 YJ5 C16 C17 SING N N 16 YJ5 N09 C10 SING N N 17 YJ5 C10 O15 DOUB N N 18 YJ5 C10 C11 SING N N 19 YJ5 C11 C12 SING N N 20 YJ5 C12 C13 SING N N 21 YJ5 C13 C14 SING N N 22 YJ5 C05 H1 SING N N 23 YJ5 C06 H2 SING N N 24 YJ5 C08 H3 SING N N 25 YJ5 C08 H4 SING N N 26 YJ5 C11 H5 SING N N 27 YJ5 C11 H6 SING N N 28 YJ5 C12 H7 SING N N 29 YJ5 C12 H8 SING N N 30 YJ5 C13 H9 SING N N 31 YJ5 C13 H10 SING N N 32 YJ5 C14 H11 SING N N 33 YJ5 C14 H12 SING N N 34 YJ5 C14 H13 SING N N 35 YJ5 C16 H14 SING N N 36 YJ5 C16 H15 SING N N 37 YJ5 C17 H16 SING N N 38 YJ5 C17 H17 SING N N 39 YJ5 C18 H18 SING N N 40 YJ5 C18 H19 SING N N 41 YJ5 C19 H20 SING N N 42 YJ5 C19 H21 SING N N 43 YJ5 C19 H22 SING N N 44 YJ5 C20 H23 SING N N 45 YJ5 C21 H24 SING N N 46 YJ5 N02 H25 SING N N 47 YJ5 O01 H26 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJ5 SMILES ACDLabs 12.01 "CCCCC(=O)N(CCCC)Cc1ccc(cc1)C(=O)NO" YJ5 InChI InChI 1.06 "InChI=1S/C17H26N2O3/c1-3-5-7-16(20)19(12-6-4-2)13-14-8-10-15(11-9-14)17(21)18-22/h8-11,22H,3-7,12-13H2,1-2H3,(H,18,21)" YJ5 InChIKey InChI 1.06 RUZXVBRXLWFADZ-UHFFFAOYSA-N YJ5 SMILES_CANONICAL CACTVS 3.385 "CCCCN(Cc1ccc(cc1)C(=O)NO)C(=O)CCCC" YJ5 SMILES CACTVS 3.385 "CCCCN(Cc1ccc(cc1)C(=O)NO)C(=O)CCCC" YJ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC(=O)N(CCCC)Cc1ccc(cc1)C(=O)NO" YJ5 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(=O)N(CCCC)Cc1ccc(cc1)C(=O)NO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YJ5 "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(N-butylpentanamido)methyl]-N-hydroxybenzamide" YJ5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[butyl(pentanoyl)amino]methyl]-~{N}-oxidanyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJ5 "Create component" 2023-02-06 RCSB YJ5 "Initial release" 2023-12-13 RCSB #