data_YJF # _chem_comp.id YJF _chem_comp.name "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-(phenylsulfonyl)-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N3 O11 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 549.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PFF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJF C10 C1 C 0 1 Y N N N N N -11.037 10.133 -1.139 6.329 -0.525 -0.503 C10 YJF 1 YJF C11 C2 C 0 1 Y N N N N N -10.001 10.270 -2.064 6.012 -0.575 -1.847 C11 YJF 2 YJF C12 C3 C 0 1 Y N N N N N -9.393 11.529 -2.335 6.737 0.173 -2.756 C12 YJF 3 YJF C13 C4 C 0 1 Y N N N N N -9.885 12.696 -1.714 7.778 0.971 -2.321 C13 YJF 4 YJF C14 C5 C 0 1 Y N N N N N -10.948 12.615 -0.812 8.095 1.021 -0.976 C14 YJF 5 YJF C15 C6 C 0 1 Y N N N N N -11.486 11.335 -0.543 7.367 0.277 -0.067 C15 YJF 6 YJF C17 C7 C 0 1 Y N N N N N -14.526 8.738 -1.226 2.828 -0.410 0.640 C17 YJF 7 YJF C18 C8 C 0 1 N N R N N N -17.315 9.756 -2.267 -0.063 -0.305 0.627 C18 YJF 8 YJF C20 C9 C 0 1 N N S N N N -18.843 9.618 -2.397 -1.491 0.148 0.314 C20 YJF 9 YJF C22 C10 C 0 1 N N S N N N -21.355 10.811 -1.986 -4.106 -0.565 -0.531 C22 YJF 10 YJF C23 C11 C 0 1 N N R N N N -22.149 11.385 -0.825 -5.009 -1.591 -1.221 C23 YJF 11 YJF C25 C12 C 0 1 N N S N N N -23.619 11.157 -1.183 -6.434 -1.036 -1.297 C25 YJF 12 YJF O31 O1 O 0 1 N N N N N N -22.793 10.797 -5.964 -5.536 1.603 2.747 O31 YJF 13 YJF O32 O2 O 0 1 N N N N N N -21.753 11.385 -3.249 -4.626 -0.271 0.767 O32 YJF 14 YJF O33 O3 O 0 1 N N N N N N -19.336 8.618 -1.505 -1.453 1.214 -0.638 O33 YJF 15 YJF O36 O4 O 0 1 N N N N N N -20.914 6.312 -1.159 -2.155 3.877 -1.462 O36 YJF 16 YJF C02 C13 C 0 1 N N R N N N -17.304 7.327 -1.596 0.703 2.011 0.106 C02 YJF 17 YJF C03 C14 C 0 1 N N S N N N -16.719 8.403 -2.518 0.741 0.889 1.149 C03 YJF 18 YJF C07 C15 C 0 1 Y N N N N N -13.208 8.483 -1.581 4.059 -0.481 1.198 C07 YJF 19 YJF C27 C16 C 0 1 N N S N N N -24.018 11.801 -2.519 -6.915 -0.697 0.117 C27 YJF 20 YJF C29 C17 C 0 1 N N R N N N -23.130 11.139 -3.566 -5.938 0.295 0.756 C29 YJF 21 YJF C30 C18 C 0 1 N N N N N N -23.394 11.668 -4.998 -6.378 0.592 2.190 C30 YJF 22 YJF C34 C19 C 0 1 N N R N N N -18.819 7.318 -1.823 -0.755 2.375 -0.187 C34 YJF 23 YJF C35 C20 C 0 1 N N N N N N -19.486 6.335 -0.964 -0.803 3.454 -1.271 C35 YJF 24 YJF N04 N1 N 0 1 Y N N N N N -15.274 8.416 -2.350 2.130 0.482 1.380 N04 YJF 25 YJF N05 N2 N 0 1 Y N N N N N -14.420 7.945 -3.301 2.894 0.911 2.322 N05 YJF 26 YJF N06 N3 N 0 1 Y N N N N N -13.208 8.019 -2.866 4.052 0.356 2.242 N06 YJF 27 YJF O01 O5 O 0 1 N N N N N N -16.973 7.628 -0.247 1.336 1.568 -1.096 O01 YJF 28 YJF O09 O6 O 0 1 N N N N N N -12.133 8.779 0.676 4.838 -2.557 -0.074 O09 YJF 29 YJF O16 O7 O 0 1 N N N N N N -10.985 7.451 -0.973 6.249 -1.663 1.786 O16 YJF 30 YJF O19 O8 O 0 1 N N N N N N -16.863 10.676 -3.233 -0.095 -1.332 1.620 O19 YJF 31 YJF O24 O9 O 0 1 N N N N N N -21.852 10.674 0.374 -4.523 -1.843 -2.541 O24 YJF 32 YJF O26 O10 O 0 1 N N N N N N -24.464 11.734 -0.177 -7.299 -2.016 -1.874 O26 YJF 33 YJF O28 O11 O 0 1 N N N N N N -25.354 11.541 -2.771 -8.217 -0.112 0.052 O28 YJF 34 YJF S08 S1 S 0 1 N N N N N N -11.811 8.622 -0.693 5.406 -1.479 0.656 S08 YJF 35 YJF S21 S2 S 0 1 N N N N N N -19.606 11.179 -1.817 -2.431 -1.243 -0.372 S21 YJF 36 YJF H111 H1 H 0 0 N N N N N N -9.650 9.395 -2.590 5.199 -1.199 -2.187 H111 YJF 37 YJF H121 H2 H 0 0 N N N N N N -8.556 11.590 -3.015 6.489 0.133 -3.807 H121 YJF 38 YJF H131 H3 H 0 0 N N N N N N -9.439 13.654 -1.937 8.345 1.555 -3.031 H131 YJF 39 YJF H141 H4 H 0 0 N N N N N N -11.346 13.499 -0.336 8.908 1.645 -0.636 H141 YJF 40 YJF H151 H5 H 0 0 N N N N N N -12.297 11.271 0.168 7.612 0.320 0.984 H151 YJF 41 YJF H171 H6 H 0 0 N N N N N N -14.891 9.107 -0.279 2.476 -0.952 -0.225 H171 YJF 42 YJF H181 H7 H 0 0 N N N N N N -17.065 10.092 -1.250 0.404 -0.690 -0.280 H181 YJF 43 YJF H201 H8 H 0 0 N N N N N N -19.147 9.459 -3.442 -1.971 0.495 1.229 H201 YJF 44 YJF H221 H9 H 0 0 N N N N N N -21.450 9.715 -2.001 -4.074 0.349 -1.125 H221 YJF 45 YJF H231 H10 H 0 0 N N N N N N -21.947 12.461 -0.720 -5.009 -2.519 -0.650 H231 YJF 46 YJF H251 H11 H 0 0 N N N N N N -23.801 10.074 -1.249 -6.443 -0.135 -1.912 H251 YJF 47 YJF H311 H12 H 0 0 N N N N N N -22.960 11.129 -6.838 -5.757 1.842 3.658 H311 YJF 48 YJF H361 H13 H 0 0 N N N N N N -21.302 5.663 -0.584 -2.261 4.561 -2.137 H361 YJF 49 YJF H021 H14 H 0 0 N N N N N N -16.894 6.348 -1.884 1.227 2.885 0.493 H021 YJF 50 YJF H031 H15 H 0 0 N N N N N N -16.950 8.116 -3.554 0.305 1.243 2.083 H031 YJF 51 YJF H271 H16 H 0 0 N N N N N N -23.811 12.881 -2.485 -6.954 -1.607 0.716 H271 YJF 52 YJF H291 H17 H 0 0 N N N N N N -23.326 10.057 -3.557 -5.930 1.219 0.179 H291 YJF 53 YJF H301 H18 H 0 0 N N N N N N -22.963 12.675 -5.099 -6.302 -0.316 2.789 H301 YJF 54 YJF H302 H19 H 0 0 N N N N N N -24.479 11.714 -5.175 -7.411 0.940 2.189 H302 YJF 55 YJF H341 H20 H 0 0 N N N N N N -19.017 7.081 -2.879 -1.225 2.752 0.722 H341 YJF 56 YJF H352 H21 H 0 0 N N N N N N -19.083 5.337 -1.191 -0.414 3.048 -2.205 H352 YJF 57 YJF H351 H22 H 0 0 N N N N N N -19.277 6.585 0.087 -0.196 4.305 -0.964 H351 YJF 58 YJF H011 H23 H 0 0 N N N N N N -17.335 6.961 0.325 1.346 2.229 -1.802 H011 YJF 59 YJF H191 H24 H 0 0 N N N N N N -17.247 11.528 -3.063 -0.591 -2.119 1.357 H191 YJF 60 YJF H241 H25 H 0 0 N N N N N N -22.353 11.041 1.093 -3.622 -2.192 -2.569 H241 YJF 61 YJF H261 H26 H 0 0 N N N N N N -24.249 11.361 0.670 -7.050 -2.283 -2.769 H261 YJF 62 YJF H281 H27 H 0 0 N N N N N N -25.889 11.962 -2.108 -8.886 -0.685 -0.347 H281 YJF 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJF O31 C30 SING N N 1 YJF C30 C29 SING N N 2 YJF C29 O32 SING N N 3 YJF C29 C27 SING N N 4 YJF N05 N06 DOUB Y N 5 YJF N05 N04 SING Y N 6 YJF O32 C22 SING N N 7 YJF O19 C18 SING N N 8 YJF N06 C07 SING Y N 9 YJF O28 C27 SING N N 10 YJF C27 C25 SING N N 11 YJF C03 N04 SING N N 12 YJF C03 C18 SING N N 13 YJF C03 C02 SING N N 14 YJF C20 C18 SING N N 15 YJF C20 S21 SING N N 16 YJF C20 O33 SING N N 17 YJF N04 C17 SING Y N 18 YJF C12 C11 DOUB Y N 19 YJF C12 C13 SING Y N 20 YJF C11 C10 SING Y N 21 YJF C22 S21 SING N N 22 YJF C22 C23 SING N N 23 YJF C34 C02 SING N N 24 YJF C34 O33 SING N N 25 YJF C34 C35 SING N N 26 YJF C13 C14 DOUB Y N 27 YJF C02 O01 SING N N 28 YJF C07 C17 DOUB Y N 29 YJF C07 S08 SING N N 30 YJF C25 C23 SING N N 31 YJF C25 O26 SING N N 32 YJF O36 C35 SING N N 33 YJF C10 S08 SING N N 34 YJF C10 C15 DOUB Y N 35 YJF O16 S08 DOUB N N 36 YJF C23 O24 SING N N 37 YJF C14 C15 SING Y N 38 YJF S08 O09 DOUB N N 39 YJF C11 H111 SING N N 40 YJF C12 H121 SING N N 41 YJF C13 H131 SING N N 42 YJF C14 H141 SING N N 43 YJF C15 H151 SING N N 44 YJF C17 H171 SING N N 45 YJF C18 H181 SING N N 46 YJF C20 H201 SING N N 47 YJF C22 H221 SING N N 48 YJF C23 H231 SING N N 49 YJF C25 H251 SING N N 50 YJF O31 H311 SING N N 51 YJF O36 H361 SING N N 52 YJF C02 H021 SING N N 53 YJF C03 H031 SING N N 54 YJF C27 H271 SING N N 55 YJF C29 H291 SING N N 56 YJF C30 H301 SING N N 57 YJF C30 H302 SING N N 58 YJF C34 H341 SING N N 59 YJF C35 H352 SING N N 60 YJF C35 H351 SING N N 61 YJF O01 H011 SING N N 62 YJF O19 H191 SING N N 63 YJF O24 H241 SING N N 64 YJF O26 H261 SING N N 65 YJF O28 H281 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJF InChI InChI 1.06 "InChI=1S/C20H27N3O11S2/c24-7-10-14(26)13(23-6-12(21-22-23)36(31,32)9-4-2-1-3-5-9)16(28)19(33-10)35-20-18(30)17(29)15(27)11(8-25)34-20/h1-6,10-11,13-20,24-30H,7-8H2/t10-,11-,13+,14+,15-,16-,17+,18-,19+,20+/m1/s1" YJF InChIKey InChI 1.06 QYZOKSXMSOLNQR-VTOAZQAJSA-N YJF SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)[S](=O)(=O)c4ccccc4)[C@H](O)[C@@H](O)[C@@H]1O" YJF SMILES CACTVS 3.385 "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)[S](=O)(=O)c4ccccc4)[CH](O)[CH](O)[CH]1O" YJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S(=O)(=O)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)CO)O" YJF SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S(=O)(=O)c2cn(nn2)C3C(C(OC(C3O)SC4C(C(C(C(O4)CO)O)O)O)CO)O" # _pdbx_chem_comp_identifier.comp_id YJF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-(phenylsulfonyl)-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJF "Create component" 2023-06-19 PDBE YJF "Initial release" 2023-11-08 RCSB #