data_YJI # _chem_comp.id YJI _chem_comp.name "N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-{2-[(2-hydroxyethyl)sulfanyl]ethyl}-beta-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H27 N2 O8 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-08 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.401 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G3I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJI C01 C1 C 0 1 N N N -51.490 21.730 -3.239 3.150 -0.731 -2.086 C01 YJI 1 YJI C02 C2 C 0 1 N N N -52.989 21.786 -2.997 4.189 -1.173 -1.054 C02 YJI 2 YJI C03 C3 C 0 1 N N N -53.466 23.172 -3.407 4.336 -0.092 0.018 C03 YJI 3 YJI C09 C4 C 0 1 N N R -53.204 21.520 -1.509 3.736 -2.481 -0.402 C09 YJI 4 YJI C10 C5 C 0 1 N N N -54.624 21.063 -1.176 2.482 -2.234 0.398 C10 YJI 5 YJI C12 C6 C 0 1 N N N -53.737 19.681 0.730 0.135 -1.598 0.548 C12 YJI 6 YJI C13 C7 C 0 1 N N N -54.210 19.021 2.018 -1.026 -1.298 -0.402 C13 YJI 7 YJI C14 C8 C 0 1 N N N -53.783 17.584 2.276 -2.255 -0.954 0.400 C14 YJI 8 YJI C16 C9 C 0 1 N N N -52.016 15.954 3.042 -4.602 -0.318 0.550 C16 YJI 9 YJI C17 C10 C 0 1 N N N -51.377 15.851 4.417 -5.764 -0.018 -0.400 C17 YJI 10 YJI C19 C11 C 0 1 N N N -52.096 14.021 6.619 -8.489 0.714 -0.714 C19 YJI 11 YJI C20 C12 C 0 1 N N N -51.967 12.797 5.731 -9.818 1.083 -0.051 C20 YJI 12 YJI C25 C13 C 0 1 N N N -53.649 20.714 -3.851 5.536 -1.390 -1.748 C25 YJI 13 YJI N11 N1 N 0 1 N N N -54.853 20.163 -0.062 1.330 -1.932 -0.232 N11 YJI 14 YJI N15 N2 N 0 1 N N N -52.455 17.313 2.788 -3.408 -0.652 -0.230 N15 YJI 15 YJI O04 O1 O 0 1 N N N -53.458 23.230 -4.802 4.759 1.129 -0.592 O04 YJI 16 YJI O06 O2 O 0 1 N N N -55.244 24.796 -5.812 3.625 2.993 0.875 O06 YJI 17 YJI O07 O3 O 0 1 N N N -53.336 25.799 -4.646 5.984 2.217 1.328 O07 YJI 18 YJI O21 O4 O 0 1 N N N -51.432 11.772 6.517 -10.800 1.333 -1.059 O21 YJI 19 YJI O22 O5 O 0 1 N N N -54.539 16.705 2.056 -2.207 -0.949 1.612 O22 YJI 20 YJI O23 O6 O 0 1 N N N -55.546 21.450 -1.804 2.511 -2.308 1.608 O23 YJI 21 YJI O24 O7 O 0 1 N N N -52.981 22.700 -0.795 4.765 -2.964 0.463 O24 YJI 22 YJI P05 P1 P 0 1 N N N -53.775 24.667 -5.531 5.015 2.483 0.242 P05 YJI 23 YJI S18 S1 S 0 1 N N N -52.657 15.418 5.619 -7.243 0.396 0.565 S18 YJI 24 YJI H012 H1 H 0 0 N N N -50.991 22.498 -2.630 2.223 -0.467 -1.578 H012 YJI 25 YJI H013 H2 H 0 0 N N N -51.110 20.736 -2.959 3.525 0.135 -2.631 H013 YJI 26 YJI H011 H3 H 0 0 N N N -51.283 21.914 -4.304 2.962 -1.546 -2.785 H011 YJI 27 YJI H032 H4 H 0 0 N N N -52.790 23.937 -2.997 3.376 0.062 0.512 H032 YJI 28 YJI H031 H5 H 0 0 N N N -54.485 23.343 -3.031 5.076 -0.407 0.753 H031 YJI 29 YJI H091 H6 H 0 0 N N N -52.500 20.738 -1.187 3.533 -3.222 -1.175 H091 YJI 30 YJI H122 H7 H 0 0 N N N -53.170 18.946 0.139 0.337 -0.721 1.164 H122 YJI 31 YJI H121 H8 H 0 0 N N N -53.085 20.530 0.982 -0.128 -2.440 1.189 H121 YJI 32 YJI H131 H9 H 0 0 N N N -53.837 19.630 2.855 -0.763 -0.457 -1.043 H131 YJI 33 YJI H132 H10 H 0 0 N N N -55.310 19.041 2.012 -1.228 -2.175 -1.018 H132 YJI 34 YJI H162 H11 H 0 0 N N N -52.883 15.278 2.994 -4.401 0.559 1.166 H162 YJI 35 YJI H161 H12 H 0 0 N N N -51.280 15.662 2.278 -4.865 -1.159 1.191 H161 YJI 36 YJI H172 H13 H 0 0 N N N -50.600 15.072 4.407 -5.501 0.824 -1.041 H172 YJI 37 YJI H171 H14 H 0 0 N N N -50.925 16.816 4.689 -5.965 -0.895 -1.015 H171 YJI 38 YJI H191 H15 H 0 0 N N N -51.119 14.257 7.066 -8.622 -0.181 -1.322 H191 YJI 39 YJI H192 H16 H 0 0 N N N -52.826 13.822 7.417 -8.158 1.537 -1.347 H192 YJI 40 YJI H202 H17 H 0 0 N N N -51.297 13.013 4.886 -10.149 0.260 0.582 H202 YJI 41 YJI H201 H18 H 0 0 N N N -52.956 12.502 5.349 -9.684 1.978 0.557 H201 YJI 42 YJI H251 H19 H 0 0 N N N -53.290 19.722 -3.538 5.888 -0.445 -2.161 H251 YJI 43 YJI H253 H20 H 0 0 N N N -54.741 20.765 -3.725 6.261 -1.763 -1.024 H253 YJI 44 YJI H252 H21 H 0 0 N N N -53.394 20.879 -4.908 5.418 -2.116 -2.552 H252 YJI 45 YJI H111 H22 H 0 0 N N N -55.784 19.874 0.161 1.291 -1.936 -1.201 H111 YJI 46 YJI H151 H23 H 0 0 N N N -51.832 18.074 2.969 -3.447 -0.656 -1.199 H151 YJI 47 YJI H1 H24 H 0 1 N N N -55.585 25.565 -5.371 2.942 3.187 0.219 H1 YJI 48 YJI H211 H26 H 0 0 N N N -51.337 10.986 5.992 -11.669 1.573 -0.710 H211 YJI 49 YJI H241 H27 H 0 0 N N N -53.114 22.540 0.132 4.998 -2.354 1.177 H241 YJI 50 YJI O1 O8 O 0 1 N Y N -52.168 24.334 -6.333 5.605 3.614 -0.740 O1 YJI 51 YJI H2 H28 H 0 1 N Y N -51.514 24.935 -5.995 5.784 4.459 -0.304 H2 YJI 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJI O06 P05 SING N N 1 YJI P05 O04 SING N N 2 YJI P05 O07 DOUB N N 3 YJI O04 C03 SING N N 4 YJI C25 C02 SING N N 5 YJI C03 C02 SING N N 6 YJI C01 C02 SING N N 7 YJI C02 C09 SING N N 8 YJI O23 C10 DOUB N N 9 YJI C09 C10 SING N N 10 YJI C09 O24 SING N N 11 YJI C10 N11 SING N N 12 YJI N11 C12 SING N N 13 YJI C12 C13 SING N N 14 YJI C13 C14 SING N N 15 YJI O22 C14 DOUB N N 16 YJI C14 N15 SING N N 17 YJI N15 C16 SING N N 18 YJI C16 C17 SING N N 19 YJI C17 S18 SING N N 20 YJI S18 C19 SING N N 21 YJI C20 O21 SING N N 22 YJI C20 C19 SING N N 23 YJI C01 H012 SING N N 24 YJI C01 H013 SING N N 25 YJI C01 H011 SING N N 26 YJI C03 H032 SING N N 27 YJI C03 H031 SING N N 28 YJI C09 H091 SING N N 29 YJI C12 H122 SING N N 30 YJI C12 H121 SING N N 31 YJI C13 H131 SING N N 32 YJI C13 H132 SING N N 33 YJI C16 H162 SING N N 34 YJI C16 H161 SING N N 35 YJI C17 H172 SING N N 36 YJI C17 H171 SING N N 37 YJI C19 H191 SING N N 38 YJI C19 H192 SING N N 39 YJI C20 H202 SING N N 40 YJI C20 H201 SING N N 41 YJI C25 H251 SING N N 42 YJI C25 H253 SING N N 43 YJI C25 H252 SING N N 44 YJI N11 H111 SING N N 45 YJI N15 H151 SING N N 46 YJI O06 H1 SING N N 47 YJI O21 H211 SING N N 48 YJI O24 H241 SING N N 49 YJI P05 O1 SING N N 50 YJI O1 H2 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJI SMILES ACDLabs 12.01 "O=C(NCCSCCO)CCNC(=O)C(O)C(C)(C)COP(=O)(O)O" YJI InChI InChI 1.06 "InChI=1S/C13H27N2O8PS/c1-13(2,9-23-24(20,21)22)11(18)12(19)15-4-3-10(17)14-5-7-25-8-6-16/h11,16,18H,3-9H2,1-2H3,(H,14,17)(H,15,19)(H2,20,21,22)/t11-/m0/s1" YJI InChIKey InChI 1.06 IGYAFBQHDWNTQK-NSHDSACASA-N YJI SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCSCCO" YJI SMILES CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCSCCO" YJI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSCCO)O" YJI SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCSCCO)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YJI "SYSTEMATIC NAME" ACDLabs 12.01 "N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-{2-[(2-hydroxyethyl)sulfanyl]ethyl}-beta-alaninamide" YJI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[2-(2-hydroxyethylsulfanyl)ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJI "Create component" 2023-02-08 RCSB YJI "Initial release" 2023-06-14 RCSB #