data_YJK # _chem_comp.id YJK _chem_comp.name "4-[(3,4-dichlorophenyl)methyl]-~{N}-[[5-[2-(4-fluorophenyl)ethylcarbamoyl]furan-2-yl]methyl]-4-(3-phenylpropyl)-1,4$l^{4}-diazinane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H38 Cl2 F N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 652.606 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8PF5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJK C1 C1 C 0 1 Y N N N N N 11.771 -1.849 16.547 ? ? ? C1 YJK 1 YJK C2 C2 C 0 1 Y N N N N N 12.149 -3.134 16.808 ? ? ? C2 YJK 2 YJK C4 C3 C 0 1 Y N N N N N 14.006 -2.840 15.280 ? ? ? C4 YJK 3 YJK C5 C4 C 0 1 N N N N N N 15.234 -3.380 14.582 ? ? ? C5 YJK 4 YJK C6 C5 C 0 1 N N N N N N 14.896 -3.951 13.222 ? ? ? C6 YJK 5 YJK C9 C6 C 0 1 Y N N N N N 10.713 -6.749 13.251 ? ? ? C9 YJK 6 YJK O3 O1 O 0 1 N N N N N N 12.075 -4.021 12.888 ? ? ? O3 YJK 7 YJK C10 C7 C 0 1 Y N N N N N 10.728 -8.172 13.350 ? ? ? C10 YJK 8 YJK C12 C8 C 0 1 N N N N N N 12.724 -9.856 13.574 ? ? ? C12 YJK 9 YJK C13 C9 C 0 1 N N N N N N 12.186 -11.113 15.668 ? ? ? C13 YJK 10 YJK C14 C10 C 0 1 N N N N N N 14.614 -10.348 15.917 ? ? ? C14 YJK 11 YJK C15 C11 C 0 1 N N N N N N 15.700 -10.939 16.788 ? ? ? C15 YJK 12 YJK C16 C12 C 0 1 N N N N N N 16.598 -11.082 19.134 ? ? ? C16 YJK 13 YJK C17 C13 C 0 1 N N N N N N 16.087 -12.087 20.162 ? ? ? C17 YJK 14 YJK C18 C14 C 0 1 N N N N N N 14.555 -12.244 20.128 ? ? ? C18 YJK 15 YJK C19 C15 C 0 1 Y N N N N N 13.999 -13.352 20.995 ? ? ? C19 YJK 16 YJK C20 C16 C 0 1 Y N N N N N 14.624 -13.718 22.177 ? ? ? C20 YJK 17 YJK C21 C17 C 0 1 Y N N N N N 14.101 -14.731 22.970 ? ? ? C21 YJK 18 YJK C23 C18 C 0 1 Y N N N N N 12.319 -15.034 21.427 ? ? ? C23 YJK 19 YJK C24 C19 C 0 1 Y N N N N N 12.838 -14.023 20.632 ? ? ? C24 YJK 20 YJK C25 C20 C 0 1 N N N N N N 15.421 -9.003 18.332 ? ? ? C25 YJK 21 YJK C26 C21 C 0 1 Y N N N N N 14.051 -8.524 18.726 ? ? ? C26 YJK 22 YJK C27 C22 C 0 1 Y N N N N N 13.162 -8.029 17.783 ? ? ? C27 YJK 23 YJK F1 F1 F 0 1 N N N N N N 10.656 -1.361 17.153 ? ? ? F1 YJK 24 YJK C3 C23 C 0 1 Y N N N N N 13.272 -3.628 16.161 ? ? ? C3 YJK 25 YJK N1 N1 N 0 1 N N N N N N 14.010 -5.099 13.334 ? ? ? N1 YJK 26 YJK C7 C24 C 0 1 N N N N N N 12.682 -5.052 13.183 ? ? ? C7 YJK 27 YJK C8 C25 C 0 1 Y N N N N N 12.008 -6.348 13.291 ? ? ? C8 YJK 28 YJK C11 C26 C 0 1 Y N N N N N 12.023 -8.550 13.456 ? ? ? C11 YJK 29 YJK N2 N2 N 0 1 N N N N N N 12.023 -10.879 14.343 ? ? ? N2 YJK 30 YJK N3 N3 N 0 1 N N N N N N 13.268 -10.663 16.403 ? ? ? N3 YJK 31 YJK N4 N4 N 0 1 N N N N N N 15.504 -10.527 18.232 ? ? ? N4 YJK 32 YJK C22 C27 C 0 1 Y N N N N N 12.949 -15.385 22.595 ? ? ? C22 YJK 33 YJK C28 C28 C 0 1 Y N N N N N 11.895 -7.618 18.148 ? ? ? C28 YJK 34 YJK C29 C29 C 0 1 Y N N N N N 11.510 -7.719 19.467 ? ? ? C29 YJK 35 YJK CL1 CL1 CL 0 0 N N N N N N 9.928 -7.203 19.920 ? ? ? CL1 YJK 36 YJK C30 C30 C 0 1 Y N N N N N 12.382 -8.224 20.411 ? ? ? C30 YJK 37 YJK CL2 CL2 CL 0 0 N N N N N N 11.929 -8.352 22.071 ? ? ? CL2 YJK 38 YJK C31 C31 C 0 1 Y N N N N N 13.645 -8.634 20.043 ? ? ? C31 YJK 39 YJK C32 C32 C 0 1 N N N N N N 14.160 -11.088 18.639 ? ? ? C32 YJK 40 YJK C33 C33 C 0 1 N N N N N N 13.083 -10.406 17.831 ? ? ? C33 YJK 41 YJK O1 O2 O 0 1 N N N N N N 11.341 -11.794 16.246 ? ? ? O1 YJK 42 YJK O2 O3 O 0 1 Y N N N N N 12.831 -7.439 13.405 ? ? ? O2 YJK 43 YJK C34 C34 C 0 1 Y N N N N N 13.567 -1.545 15.042 ? ? ? C34 YJK 44 YJK C35 C35 C 0 1 Y N N N N N 12.438 -1.041 15.673 ? ? ? C35 YJK 45 YJK H1 H1 H 0 1 N N N N N N 11.590 -3.748 17.498 ? ? ? H1 YJK 46 YJK H2 H2 H 0 1 N N N N N N 15.961 -2.564 14.456 ? ? ? H2 YJK 47 YJK H3 H3 H 0 1 N N N N N N 15.677 -4.173 15.202 ? ? ? H3 YJK 48 YJK H4 H4 H 0 1 N N N N N N 14.401 -3.174 12.621 ? ? ? H4 YJK 49 YJK H5 H5 H 0 1 N N N N N N 15.826 -4.264 12.724 ? ? ? H5 YJK 50 YJK H6 H6 H 0 1 N N N N N N 9.842 -6.116 13.162 ? ? ? H6 YJK 51 YJK H7 H7 H 0 1 N N N N N N 9.868 -8.825 13.342 ? ? ? H7 YJK 52 YJK H8 H8 H 0 1 N N N N N N 12.885 -10.247 12.558 ? ? ? H8 YJK 53 YJK H9 H9 H 0 1 N N N N N N 13.696 -9.676 14.056 ? ? ? H9 YJK 54 YJK H10 H10 H 0 1 N N N N N N 14.734 -9.255 15.897 ? ? ? H10 YJK 55 YJK H11 H11 H 0 1 N N N N N N 14.723 -10.748 14.898 ? ? ? H11 YJK 56 YJK H12 H12 H 0 1 N N N N N N 15.665 -12.036 16.716 ? ? ? H12 YJK 57 YJK H13 H13 H 0 1 N N N N N N 16.679 -10.580 16.439 ? ? ? H13 YJK 58 YJK H14 H14 H 0 1 N N N N N N 17.066 -10.243 19.670 ? ? ? H14 YJK 59 YJK H15 H15 H 0 1 N N N N N N 17.350 -11.580 18.504 ? ? ? H15 YJK 60 YJK H16 H16 H 0 1 N N N N N N 16.546 -13.065 19.956 ? ? ? H16 YJK 61 YJK H17 H17 H 0 1 N N N N N N 16.384 -11.747 21.165 ? ? ? H17 YJK 62 YJK H18 H18 H 0 1 N N N N N N 14.109 -11.295 20.461 ? ? ? H18 YJK 63 YJK H19 H19 H 0 1 N N N N N N 14.257 -12.444 19.088 ? ? ? H19 YJK 64 YJK H20 H20 H 0 1 N N N N N N 15.526 -13.210 22.484 ? ? ? H20 YJK 65 YJK H21 H21 H 0 1 N N N N N N 14.601 -15.007 23.886 ? ? ? H21 YJK 66 YJK H22 H22 H 0 1 N N N N N N 11.417 -15.546 21.126 ? ? ? H22 YJK 67 YJK H23 H23 H 0 1 N N N N N N 12.332 -13.753 19.717 ? ? ? H23 YJK 68 YJK H24 H24 H 0 1 N N N N N N 15.678 -8.571 17.353 ? ? ? H24 YJK 69 YJK H25 H25 H 0 1 N N N N N N 16.145 -8.659 19.086 ? ? ? H25 YJK 70 YJK H26 H26 H 0 1 N N N N N N 13.465 -7.964 16.748 ? ? ? H26 YJK 71 YJK H27 H27 H 0 1 N N N N N N 13.583 -4.646 16.345 ? ? ? H27 YJK 72 YJK H28 H28 H 0 1 N N N N N N 14.423 -5.986 13.538 ? ? ? H28 YJK 73 YJK H29 H29 H 0 1 N N N N N N 11.369 -11.454 13.852 ? ? ? H29 YJK 74 YJK H30 H30 H 0 1 N N N N N N 12.543 -16.170 23.216 ? ? ? H30 YJK 75 YJK H31 H31 H 0 1 N N N N N N 11.214 -7.222 17.409 ? ? ? H31 YJK 76 YJK H32 H32 H 0 1 N N N N N N 14.318 -9.041 20.783 ? ? ? H32 YJK 77 YJK H33 H33 H 0 1 N N N N N N 14.137 -12.171 18.446 ? ? ? H33 YJK 78 YJK H34 H34 H 0 1 N N N N N N 13.991 -10.903 19.710 ? ? ? H34 YJK 79 YJK H35 H35 H 0 1 N N N N N N 13.128 -9.322 18.012 ? ? ? H35 YJK 80 YJK H36 H36 H 0 1 N N N N N N 12.100 -10.789 18.143 ? ? ? H36 YJK 81 YJK H37 H37 H 0 1 N N N N N N 14.114 -0.918 14.353 ? ? ? H37 YJK 82 YJK H38 H38 H 0 1 N N N N N N 12.096 -0.035 15.477 ? ? ? H38 YJK 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJK C1 C2 DOUB Y N 1 YJK C1 F1 SING N N 2 YJK C1 C35 SING Y N 3 YJK C2 C3 SING Y N 4 YJK C4 C5 SING N N 5 YJK C4 C3 DOUB Y N 6 YJK C4 C34 SING Y N 7 YJK C5 C6 SING N N 8 YJK C6 N1 SING N N 9 YJK C9 C10 SING Y N 10 YJK C9 C8 DOUB Y N 11 YJK O3 C7 DOUB N N 12 YJK C10 C11 DOUB Y N 13 YJK C12 C11 SING N N 14 YJK C12 N2 SING N N 15 YJK C13 N2 SING N N 16 YJK C13 N3 SING N N 17 YJK C13 O1 DOUB N N 18 YJK C14 C15 SING N N 19 YJK C14 N3 SING N N 20 YJK C15 N4 SING N N 21 YJK C16 C17 SING N N 22 YJK C16 N4 SING N N 23 YJK C17 C18 SING N N 24 YJK C18 C19 SING N N 25 YJK C19 C20 DOUB Y N 26 YJK C19 C24 SING Y N 27 YJK C20 C21 SING Y N 28 YJK C21 C22 DOUB Y N 29 YJK C23 C24 DOUB Y N 30 YJK C23 C22 SING Y N 31 YJK C25 C26 SING N N 32 YJK C25 N4 SING N N 33 YJK C26 C27 DOUB Y N 34 YJK C26 C31 SING Y N 35 YJK C27 C28 SING Y N 36 YJK N1 C7 SING N N 37 YJK C7 C8 SING N N 38 YJK C8 O2 SING Y N 39 YJK C11 O2 SING Y N 40 YJK N3 C33 SING N N 41 YJK N4 C32 SING N N 42 YJK C28 C29 DOUB Y N 43 YJK C29 CL1 SING N N 44 YJK C29 C30 SING Y N 45 YJK C30 CL2 SING N N 46 YJK C30 C31 DOUB Y N 47 YJK C32 C33 SING N N 48 YJK C34 C35 DOUB Y N 49 YJK C2 H1 SING N N 50 YJK C5 H2 SING N N 51 YJK C5 H3 SING N N 52 YJK C6 H4 SING N N 53 YJK C6 H5 SING N N 54 YJK C9 H6 SING N N 55 YJK C10 H7 SING N N 56 YJK C12 H8 SING N N 57 YJK C12 H9 SING N N 58 YJK C14 H10 SING N N 59 YJK C14 H11 SING N N 60 YJK C15 H12 SING N N 61 YJK C15 H13 SING N N 62 YJK C16 H14 SING N N 63 YJK C16 H15 SING N N 64 YJK C17 H16 SING N N 65 YJK C17 H17 SING N N 66 YJK C18 H18 SING N N 67 YJK C18 H19 SING N N 68 YJK C20 H20 SING N N 69 YJK C21 H21 SING N N 70 YJK C23 H22 SING N N 71 YJK C24 H23 SING N N 72 YJK C25 H24 SING N N 73 YJK C25 H25 SING N N 74 YJK C27 H26 SING N N 75 YJK C3 H27 SING N N 76 YJK N1 H28 SING N N 77 YJK N2 H29 SING N N 78 YJK C22 H30 SING N N 79 YJK C28 H31 SING N N 80 YJK C31 H32 SING N N 81 YJK C32 H33 SING N N 82 YJK C32 H34 SING N N 83 YJK C33 H35 SING N N 84 YJK C33 H36 SING N N 85 YJK C34 H37 SING N N 86 YJK C35 H38 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJK InChI InChI 1.06 "InChI=1S/C35H38Cl2FN4O3/c36-31-14-10-28(23-32(31)37)25-42(20-4-7-26-5-2-1-3-6-26)21-18-41(19-22-42)35(44)40-24-30-13-15-33(45-30)34(43)39-17-16-27-8-11-29(38)12-9-27/h1-3,5-6,8-15,23H,4,7,16-22,24-25H2,(H,39,43)(H,40,44)" YJK InChIKey InChI 1.06 HKQZNXHCKAHUIF-UHFFFAOYSA-N YJK SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(CCNC(=O)c2oc(CNC(=O)N3CC[N](CCCc4ccccc4)(CC3)Cc5ccc(Cl)c(Cl)c5)cc2)cc1" YJK SMILES CACTVS 3.385 "Fc1ccc(CCNC(=O)c2oc(CNC(=O)N3CC[N](CCCc4ccccc4)(CC3)Cc5ccc(Cl)c(Cl)c5)cc2)cc1" YJK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC[N]2(CCN(CC2)C(=O)NCc3ccc(o3)C(=O)NCCc4ccc(cc4)F)Cc5ccc(c(c5)Cl)Cl" YJK SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC[N]2(CCN(CC2)C(=O)NCc3ccc(o3)C(=O)NCCc4ccc(cc4)F)Cc5ccc(c(c5)Cl)Cl" # _pdbx_chem_comp_identifier.comp_id YJK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(3,4-dichlorophenyl)methyl]-~{N}-[[5-[2-(4-fluorophenyl)ethylcarbamoyl]furan-2-yl]methyl]-4-(3-phenylpropyl)-1,4$l^{4}-diazinane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJK "Create component" 2023-06-19 PDBE YJK "Initial release" 2024-04-03 RCSB #