data_YJS # _chem_comp.id YJS _chem_comp.name "3-chloro-5-{7-[2-({5-chloro-2-[(3S)-3-methylmorpholin-4-yl]pyridin-4-yl}amino)-2-oxoethyl]-3-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-hydroxybenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 Cl2 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-11 _chem_comp.pdbx_modified_date 2022-03-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 586.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJS N11 N1 N 0 1 N N N -7.691 0.885 196.117 2.766 2.296 0.947 N11 YJS 1 YJS C12 C1 C 0 1 N N N -7.349 0.102 197.195 1.606 1.613 0.898 C12 YJS 2 YJS O13 O1 O 0 1 N N N -8.057 -0.800 197.606 1.490 0.668 0.147 O13 YJS 3 YJS C01 C2 C 0 1 N N N -12.701 0.206 197.875 7.688 -1.109 -1.085 C01 YJS 4 YJS C02 C3 C 0 1 N N S -12.496 -0.999 196.924 6.491 -1.446 -1.975 C02 YJS 5 YJS C03 C4 C 0 1 N N N -13.617 -1.985 197.084 6.572 -2.913 -2.406 C03 YJS 6 YJS C05 C5 C 0 1 N N N -14.686 -1.086 195.130 5.282 -3.566 -0.496 C05 YJS 7 YJS C06 C6 C 0 1 N N N -13.663 0.003 195.142 5.188 -2.106 -0.045 C06 YJS 8 YJS C08 C7 C 0 1 Y N N -11.231 0.190 195.156 5.108 0.106 -0.861 C08 YJS 9 YJS C09 C8 C 0 1 Y N N -10.077 0.142 195.908 3.994 0.510 -0.137 C09 YJS 10 YJS C10 C9 C 0 1 Y N N -8.933 0.814 195.399 3.871 1.848 0.220 C10 YJS 11 YJS C14 C10 C 0 1 N N N -5.983 0.426 197.821 0.452 2.023 1.777 C14 YJS 12 YJS C16 C11 C 0 1 Y N N -4.660 -1.596 197.500 -1.712 1.388 0.674 C16 YJS 13 YJS C17 C12 C 0 1 Y N N -4.247 -2.626 198.289 -2.592 0.355 0.697 C17 YJS 14 YJS C18 C13 C 0 1 Y N N -4.763 -2.389 199.620 -2.061 -0.619 1.656 C18 YJS 15 YJS C19 C14 C 0 1 Y N N -5.449 -1.233 199.557 -0.868 -0.077 2.148 C19 YJS 16 YJS C21 C15 C 0 1 N N N -6.049 -1.341 201.933 -0.568 -1.933 3.485 C21 YJS 17 YJS C23 C16 C 0 1 N N N -5.268 -3.229 203.295 -2.120 -3.818 3.565 C23 YJS 18 YJS C24 C17 C 0 1 N N N -4.682 -3.124 200.935 -2.488 -1.879 2.131 C24 YJS 19 YJS C26 C18 C 0 1 Y N N -3.411 -3.746 197.728 -3.843 0.236 -0.092 C26 YJS 20 YJS C27 C19 C 0 1 Y N N -2.566 -4.507 198.482 -4.757 1.282 -0.106 C27 YJS 21 YJS C28 C20 C 0 1 Y N N -1.837 -5.494 197.853 -5.932 1.166 -0.849 C28 YJS 22 YJS C29 C21 C 0 1 N N N -0.878 -6.347 198.657 -6.908 2.273 -0.871 C29 YJS 23 YJS C32 C22 C 0 1 Y N N -1.949 -5.696 196.507 -6.183 -0.006 -1.576 C32 YJS 24 YJS C34 C23 C 0 1 Y N N -2.802 -4.913 195.767 -5.262 -1.046 -1.553 C34 YJS 25 YJS C36 C24 C 0 1 Y N N -3.533 -3.951 196.357 -4.098 -0.926 -0.823 C36 YJS 26 YJS C37 C25 C 0 1 Y N N -9.053 1.512 194.222 4.879 2.734 -0.167 C37 YJS 27 YJS C39 C26 C 0 1 Y N N -10.252 1.529 193.503 5.956 2.256 -0.885 C39 YJS 28 YJS N07 N2 N 0 1 N N N -12.441 -0.490 195.602 5.245 -1.230 -1.225 N07 YJS 29 YJS N15 N3 N 0 1 Y N N -5.368 -0.775 198.272 -0.685 1.130 1.539 N15 YJS 30 YJS N20 N4 N 0 1 N N N -6.128 -0.658 200.699 -0.163 -0.771 3.057 N20 YJS 31 YJS N22 N5 N 0 1 N N N -5.331 -2.552 202.016 -1.716 -2.509 3.046 N22 YJS 32 YJS N30 N6 N 0 1 N N N -0.132 -7.430 197.993 -6.664 3.399 -0.171 N30 YJS 33 YJS N40 N7 N 0 1 Y N N -11.313 0.871 194.004 6.040 0.980 -1.213 N40 YJS 34 YJS O04 O2 O 0 1 N N N -14.835 -1.604 196.442 6.483 -3.750 -1.250 O04 YJS 35 YJS O25 O3 O 0 1 N N N -4.099 -4.118 201.064 -3.521 -2.385 1.728 O25 YJS 36 YJS O31 O4 O 0 1 N N N -0.696 -6.087 199.813 -7.931 2.169 -1.519 O31 YJS 37 YJS O33 O5 O 0 1 N N N -1.203 -6.729 195.942 -7.324 -0.125 -2.300 O33 YJS 38 YJS CL35 CL1 CL 0 0 N N N -2.956 -5.154 194.033 -5.570 -2.494 -2.459 CL35 YJS 39 YJS CL38 CL2 CL 0 0 N N N -7.655 2.391 193.566 4.778 4.416 0.250 CL38 YJS 40 YJS H111 H1 H 0 0 N N N -7.020 1.559 195.808 2.833 3.101 1.485 H111 YJS 41 YJS H011 H2 H 0 0 N N N -12.749 -0.151 198.914 8.612 -1.273 -1.640 H011 YJS 42 YJS H012 H3 H 0 0 N N N -11.860 0.906 197.766 7.630 -0.064 -0.778 H012 YJS 43 YJS H013 H4 H 0 0 N N N -13.640 0.719 197.620 7.677 -1.748 -0.202 H013 YJS 44 YJS H021 H5 H 0 0 N N N -11.546 -1.490 197.183 6.501 -0.807 -2.857 H021 YJS 45 YJS H031 H6 H 0 0 N N N -13.818 -2.106 198.159 5.748 -3.139 -3.083 H031 YJS 46 YJS H032 H7 H 0 0 N N N -13.292 -2.947 196.661 7.520 -3.092 -2.914 H032 YJS 47 YJS H051 H8 H 0 0 N N N -15.649 -0.682 194.783 5.298 -4.216 0.378 H051 YJS 48 YJS H052 H9 H 0 0 N N N -14.360 -1.889 194.453 4.421 -3.811 -1.118 H052 YJS 49 YJS H061 H10 H 0 0 N N N -13.536 0.394 194.122 4.246 -1.947 0.481 H061 YJS 50 YJS H062 H11 H 0 0 N N N -14.001 0.812 195.806 6.020 -1.876 0.620 H062 YJS 51 YJS H091 H12 H 0 0 N N N -10.043 -0.387 196.849 3.235 -0.204 0.144 H091 YJS 52 YJS H142 H13 H 0 0 N N N -5.340 0.906 197.069 0.752 1.959 2.823 H142 YJS 53 YJS H141 H14 H 0 0 N N N -6.123 1.108 198.673 0.164 3.048 1.544 H141 YJS 54 YJS H161 H15 H 0 0 N N N -4.452 -1.469 196.448 -1.806 2.274 0.063 H161 YJS 55 YJS H211 H16 H 0 0 N N N -6.536 -0.938 202.809 0.031 -2.456 4.216 H211 YJS 56 YJS H231 H17 H 0 0 N N N -5.829 -2.651 204.044 -1.381 -4.167 4.286 H231 YJS 57 YJS H233 H18 H 0 0 N N N -5.709 -4.232 203.201 -3.091 -3.732 4.053 H233 YJS 58 YJS H232 H19 H 0 0 N N N -4.218 -3.318 203.611 -2.190 -4.530 2.742 H232 YJS 59 YJS H271 H20 H 0 0 N N N -2.471 -4.340 199.545 -4.558 2.183 0.456 H271 YJS 60 YJS H361 H21 H 0 0 N N N -4.208 -3.343 195.773 -3.386 -1.738 -0.810 H361 YJS 61 YJS H391 H22 H 0 0 N N N -10.325 2.059 192.565 6.736 2.937 -1.191 H391 YJS 62 YJS H301 H23 H 0 0 N N N 0.540 -7.963 198.508 -5.848 3.482 0.346 H301 YJS 63 YJS H302 H24 H 0 0 N N N -0.297 -7.632 197.028 -7.305 4.127 -0.185 H302 YJS 64 YJS H331 H25 H 0 0 N N N -0.679 -7.147 196.615 -7.246 0.187 -3.211 H331 YJS 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJS C39 N40 DOUB Y N 1 YJS C39 C37 SING Y N 2 YJS CL38 C37 SING N N 3 YJS N40 C08 SING Y N 4 YJS CL35 C34 SING N N 5 YJS C37 C10 DOUB Y N 6 YJS C05 C06 SING N N 7 YJS C05 O04 SING N N 8 YJS C06 N07 SING N N 9 YJS C08 N07 SING N N 10 YJS C08 C09 DOUB Y N 11 YJS C10 C09 SING Y N 12 YJS C10 N11 SING N N 13 YJS N07 C02 SING N N 14 YJS C34 C36 DOUB Y N 15 YJS C34 C32 SING Y N 16 YJS O33 C32 SING N N 17 YJS N11 C12 SING N N 18 YJS C36 C26 SING Y N 19 YJS O04 C03 SING N N 20 YJS C32 C28 DOUB Y N 21 YJS C02 C03 SING N N 22 YJS C02 C01 SING N N 23 YJS C12 O13 DOUB N N 24 YJS C12 C14 SING N N 25 YJS C16 N15 SING Y N 26 YJS C16 C17 DOUB Y N 27 YJS C26 C17 SING N N 28 YJS C26 C27 DOUB Y N 29 YJS C14 N15 SING N N 30 YJS C28 C27 SING Y N 31 YJS C28 C29 SING N N 32 YJS N30 C29 SING N N 33 YJS N15 C19 SING Y N 34 YJS C17 C18 SING Y N 35 YJS C29 O31 DOUB N N 36 YJS C19 C18 DOUB Y N 37 YJS C19 N20 SING N N 38 YJS C18 C24 SING N N 39 YJS N20 C21 DOUB N N 40 YJS C24 O25 DOUB N N 41 YJS C24 N22 SING N N 42 YJS C21 N22 SING N N 43 YJS N22 C23 SING N N 44 YJS N11 H111 SING N N 45 YJS C01 H011 SING N N 46 YJS C01 H012 SING N N 47 YJS C01 H013 SING N N 48 YJS C02 H021 SING N N 49 YJS C03 H031 SING N N 50 YJS C03 H032 SING N N 51 YJS C05 H051 SING N N 52 YJS C05 H052 SING N N 53 YJS C06 H061 SING N N 54 YJS C06 H062 SING N N 55 YJS C09 H091 SING N N 56 YJS C14 H142 SING N N 57 YJS C14 H141 SING N N 58 YJS C16 H161 SING N N 59 YJS C21 H211 SING N N 60 YJS C23 H231 SING N N 61 YJS C23 H233 SING N N 62 YJS C23 H232 SING N N 63 YJS C27 H271 SING N N 64 YJS C36 H361 SING N N 65 YJS C39 H391 SING N N 66 YJS N30 H301 SING N N 67 YJS N30 H302 SING N N 68 YJS O33 H331 SING N N 69 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJS SMILES ACDLabs 12.01 "NC(=O)c1cc(cc(Cl)c1O)c1cn(CC(=O)Nc2cc(ncc2Cl)N2CCOCC2C)c2N=CN(C)C(=O)c12" YJS InChI InChI 1.03 "InChI=1S/C26H25Cl2N7O5/c1-13-11-40-4-3-35(13)20-7-19(18(28)8-30-20)32-21(36)10-34-9-16(22-25(34)31-12-33(2)26(22)39)14-5-15(24(29)38)23(37)17(27)6-14/h5-9,12-13,37H,3-4,10-11H2,1-2H3,(H2,29,38)(H,30,32,36)/t13-/m0/s1" YJS InChIKey InChI 1.03 NDRFFOKFYGUOKD-ZDUSSCGKSA-N YJS SMILES_CANONICAL CACTVS 3.385 "C[C@H]1COCCN1c2cc(NC(=O)Cn3cc(c4cc(Cl)c(O)c(c4)C(N)=O)c5C(=O)N(C)C=Nc35)c(Cl)cn2" YJS SMILES CACTVS 3.385 "C[CH]1COCCN1c2cc(NC(=O)Cn3cc(c4cc(Cl)c(O)c(c4)C(N)=O)c5C(=O)N(C)C=Nc35)c(Cl)cn2" YJS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1COCCN1c2cc(c(cn2)Cl)NC(=O)Cn3cc(c4c3N=CN(C4=O)C)c5cc(c(c(c5)Cl)O)C(=O)N" YJS SMILES "OpenEye OEToolkits" 2.0.7 "CC1COCCN1c2cc(c(cn2)Cl)NC(=O)Cn3cc(c4c3N=CN(C4=O)C)c5cc(c(c(c5)Cl)O)C(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YJS "SYSTEMATIC NAME" ACDLabs 12.01 "3-chloro-5-{7-[2-({5-chloro-2-[(3S)-3-methylmorpholin-4-yl]pyridin-4-yl}amino)-2-oxoethyl]-3-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-hydroxybenzamide" YJS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-chloranyl-5-[7-[2-[[5-chloranyl-2-[(3~{S})-3-methylmorpholin-4-yl]pyridin-4-yl]amino]-2-oxidanylidene-ethyl]-3-methyl-4-oxidanylidene-pyrrolo[2,3-d]pyrimidin-5-yl]-2-oxidanyl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJS "Create component" 2021-03-11 RCSB YJS "Initial release" 2022-03-16 RCSB ##