data_YJT # _chem_comp.id YJT _chem_comp.name "6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H12 F2 N2 O5 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2023-07-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 528.392 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PFT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJT C2 C1 C 0 1 Y N N -26.725 3.033 6.511 2.059 1.460 -0.011 C2 YJT 1 YJT C4 C2 C 0 1 Y N N -28.205 4.906 6.617 3.617 3.059 -0.888 C4 YJT 2 YJT O4 O1 O 0 1 N N N -23.016 -0.350 7.095 -2.762 -2.232 0.335 O4 YJT 3 YJT C5 C3 C 0 1 Y N N -28.545 4.670 5.298 4.667 2.305 -0.393 C5 YJT 4 YJT C6 C4 C 0 1 Y N N -28.019 3.647 4.565 4.416 1.126 0.287 C6 YJT 5 YJT N2 N1 N 0 1 N N N -25.282 0.650 8.707 -1.303 0.222 -1.351 N2 YJT 6 YJT C3 C5 C 0 1 Y N N -27.277 4.076 7.243 2.315 2.639 -0.698 C3 YJT 7 YJT O3 O2 O 0 1 N N N -23.434 0.936 5.590 0.642 -0.883 2.886 O3 YJT 8 YJT C1 C6 C 0 1 N N N -25.639 1.854 8.268 0.062 0.787 -1.127 C1 YJT 9 YJT O1 O3 O 0 1 N N N -27.378 -0.005 5.711 1.910 -1.830 0.060 O1 YJT 10 YJT RU1 RU1 RU 0 0 N N S -25.438 0.600 5.632 0.692 -0.758 1.051 RU1 YJT 11 YJT RU2 RU2 RU 0 0 N N R -24.961 -0.809 7.375 -1.228 -1.518 -0.388 RU2 YJT 12 YJT F1 F1 F 0 1 N N N -29.449 5.495 4.701 5.940 2.718 -0.579 F1 YJT 13 YJT F2 F2 F 0 1 N N N -23.577 -0.400 13.835 -5.179 3.508 0.800 F2 YJT 14 YJT O2 O4 O 0 1 N N N -26.917 -1.405 7.475 -0.068 -2.614 -1.423 O2 YJT 15 YJT N1 N2 N 0 1 N N N -25.766 2.083 6.974 0.742 1.033 0.181 N1 YJT 16 YJT C7 C7 C 0 1 Y N N -27.107 2.839 5.187 3.115 0.702 0.479 C7 YJT 17 YJT C14 C8 C 0 1 N N N -27.745 -0.896 6.615 1.149 -2.430 -0.876 C14 YJT 18 YJT C11 C9 C 0 1 Y N N -23.978 -0.128 12.582 -4.230 2.703 0.273 C11 YJT 19 YJT C8 C10 C 0 1 Y N N -24.836 0.414 10.045 -2.286 1.054 -0.806 C8 YJT 20 YJT C10 C11 C 0 1 Y N N -23.361 0.845 11.876 -3.213 2.215 1.077 C10 YJT 21 YJT C9 C12 C 0 1 Y N N -23.768 1.122 10.592 -2.242 1.393 0.540 C9 YJT 22 YJT C12 C13 C 0 1 Y N N -25.007 -0.847 12.058 -4.279 2.362 -1.068 C12 YJT 23 YJT C13 C14 C 0 1 Y N N -25.436 -0.584 10.784 -3.309 1.540 -1.609 C13 YJT 24 YJT O7 O5 O 0 1 N N N -28.949 -1.197 6.591 1.908 -3.122 -1.523 O7 YJT 25 YJT H1 H1 H 0 1 N N N -28.654 5.726 7.157 3.816 3.977 -1.422 H1 YJT 26 YJT H2 H2 H 0 1 N N N -22.485 -0.820 7.727 -3.425 -2.486 -0.321 H2 YJT 27 YJT H3 H3 H 0 1 N N N -28.310 3.482 3.538 5.237 0.536 0.668 H3 YJT 28 YJT H4 H4 H 0 1 N N N -26.994 4.240 8.272 1.495 3.228 -1.084 H4 YJT 29 YJT H5 H5 H 0 1 N N N -23.271 1.863 5.463 1.479 -0.663 3.318 H5 YJT 30 YJT H6 H6 H 0 1 N N N -24.885 2.562 8.641 0.741 0.154 -1.698 H6 YJT 31 YJT H7 H7 H 0 1 N N N -26.613 2.081 8.726 0.076 1.743 -1.650 H7 YJT 32 YJT H8 H8 H 0 1 N N N -26.669 2.023 4.632 2.919 -0.218 1.010 H8 YJT 33 YJT H9 H9 H 0 1 N N N -22.550 1.404 12.319 -3.179 2.479 2.123 H9 YJT 34 YJT H10 H10 H 0 1 N N N -23.264 1.882 10.013 -1.449 1.013 1.167 H10 YJT 35 YJT H11 H11 H 0 1 N N N -25.483 -1.620 12.643 -5.075 2.740 -1.692 H11 YJT 36 YJT H12 H12 H 0 1 N N N -26.245 -1.159 10.358 -3.346 1.278 -2.656 H12 YJT 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJT C6 C7 DOUB Y N 1 YJT C6 C5 SING Y N 2 YJT F1 C5 SING N N 3 YJT C7 C2 SING Y N 4 YJT C5 C4 DOUB Y N 5 YJT O3 RU1 SING N N 6 YJT RU1 O1 SING N N 7 YJT RU1 N1 SING N N 8 YJT RU1 RU2 SING N N 9 YJT O1 C14 SING N N 10 YJT C2 N1 SING N N 11 YJT C2 C3 DOUB Y N 12 YJT O7 C14 DOUB N N 13 YJT C14 O2 SING N N 14 YJT C4 C3 SING Y N 15 YJT N1 C1 SING N N 16 YJT O4 RU2 SING N N 17 YJT RU2 O2 SING N N 18 YJT RU2 N2 SING N N 19 YJT C1 N2 SING N N 20 YJT N2 C8 SING N N 21 YJT C8 C9 DOUB Y N 22 YJT C8 C13 SING Y N 23 YJT C9 C10 SING Y N 24 YJT C13 C12 DOUB Y N 25 YJT C10 C11 DOUB Y N 26 YJT C12 C11 SING Y N 27 YJT C11 F2 SING N N 28 YJT C4 H1 SING N N 29 YJT O4 H2 SING N N 30 YJT C6 H3 SING N N 31 YJT C3 H4 SING N N 32 YJT O3 H5 SING N N 33 YJT C1 H6 SING N N 34 YJT C1 H7 SING N N 35 YJT C7 H8 SING N N 36 YJT C10 H9 SING N N 37 YJT C9 H10 SING N N 38 YJT C12 H11 SING N N 39 YJT C13 H12 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJT InChI InChI 1.06 "InChI=1S/C13H10F2N2.CH2O3.2H2O.2Ru/c14-10-1-5-12(6-2-10)16-9-17-13-7-3-11(15)4-8-13;2-1(3)4;;;;/h1-8H,9H2;(H2,2,3,4);2*1H2;;/q-2;;;;2*+3/p-4" YJT InChIKey InChI 1.06 MTQUSIMNYQTHAA-UHFFFAOYSA-J YJT SMILES_CANONICAL CACTVS 3.385 "O[Ru@]12OC(=O)O[Ru@@]1(O)N(CN2c3ccc(F)cc3)c4ccc(F)cc4" YJT SMILES CACTVS 3.385 "O[Ru]12OC(=O)O[Ru]1(O)N(CN2c3ccc(F)cc3)c4ccc(F)cc4" YJT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1N2CN([Ru]3([Ru]2(OC(=O)O3)O)O)c4ccc(cc4)F)F" YJT SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1N2CN([Ru]3([Ru]2(OC(=O)O3)O)O)c4ccc(cc4)F)F" # _pdbx_chem_comp_identifier.comp_id YJT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJT "Create component" 2023-06-19 PDBE YJT "Initial release" 2023-07-19 RCSB #