data_YJU # _chem_comp.id YJU _chem_comp.name "N-{2-[(1r,4r)-4-(hydroxymethyl)cyclohexyl]-6-(2-hydroxypropan-2-yl)-2H-indazol-5-yl}-6-(trifluoromethyl)pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-04 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.491 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V2F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJU N1 N1 N 0 1 Y N N N N N -80.409 -46.595 46.228 -3.348 1.861 -0.003 N1 YJU 1 YJU N3 N2 N 0 1 N N N N N N -77.610 -45.927 41.554 1.844 0.096 -0.136 N3 YJU 2 YJU C4 C1 C 0 1 Y N N N N N -78.863 -44.945 43.400 0.327 1.952 0.178 C4 YJU 3 YJU C5 C2 C 0 1 Y N N N N N -79.558 -45.005 44.543 -0.917 2.486 0.233 C5 YJU 4 YJU C6 C3 C 0 1 Y N N N N N -79.804 -46.255 45.130 -2.042 1.662 0.014 C6 YJU 5 YJU C7 C4 C 0 1 Y N N N N N -79.709 -48.488 45.292 -3.080 -0.324 -0.441 C7 YJU 6 YJU C8 C5 C 0 1 Y N N N N N -79.319 -47.464 44.475 -1.827 0.235 -0.270 C8 YJU 7 YJU C10 C6 C 0 1 Y N N N N N -78.378 -46.113 42.747 0.536 0.591 -0.092 C10 YJU 8 YJU C13 C7 C 0 1 Y N N N N N -75.453 -47.172 38.922 3.769 -2.935 0.790 C13 YJU 9 YJU C15 C8 C 0 1 Y N N N N N -74.843 -45.292 37.579 6.083 -2.518 0.406 C15 YJU 10 YJU C17 C9 C 0 1 N N N N N N -76.074 -43.122 37.921 6.830 -0.310 -0.498 C17 YJU 11 YJU C20 C10 C 0 1 N N N N N N -81.352 -50.891 48.650 -7.266 -0.764 -1.561 C20 YJU 12 YJU C21 C11 C 0 1 N N N N N N -80.472 -50.427 49.846 -7.815 -1.238 -0.214 C21 YJU 13 YJU C22 C12 C 0 1 N N N N N N -81.147 -50.893 51.162 -9.330 -1.426 -0.319 C22 YJU 14 YJU C24 C13 C 0 1 N N N N N N -79.860 -48.349 48.597 -5.990 -0.005 0.965 C24 YJU 15 YJU C1 C14 C 0 1 N N N N N N -78.444 -42.475 43.928 2.399 2.239 1.510 C1 YJU 16 YJU C2 C15 C 0 1 N N N N N N -78.520 -43.562 42.871 1.519 2.843 0.414 C2 YJU 17 YJU C3 C16 C 0 1 N N N N N N -79.394 -43.159 41.712 2.328 2.966 -0.879 C3 YJU 18 YJU O1 O1 O 0 1 N N N N N N -77.167 -43.576 42.460 1.073 4.138 0.821 O1 YJU 19 YJU N2 N3 N 0 1 Y N N N N N -80.333 -47.953 46.349 -3.990 0.649 -0.281 N2 YJU 20 YJU C9 C17 C 0 1 Y N N N N N -78.629 -47.343 43.265 -0.506 -0.259 -0.313 C9 YJU 21 YJU C11 C18 C 0 1 N N N N N N -77.218 -46.858 40.645 2.107 -1.152 0.301 C11 YJU 22 YJU O2 O2 O 0 1 N N N N N N -77.427 -48.061 40.691 1.198 -1.873 0.663 O2 YJU 23 YJU C12 C19 C 0 1 Y N N N N N -76.402 -46.345 39.539 3.503 -1.644 0.338 C12 YJU 24 YJU C14 C20 C 0 1 Y N N N N N -74.684 -46.639 37.930 5.081 -3.380 0.825 C14 YJU 25 YJU C16 C21 C 0 1 Y N N N N N -75.788 -44.547 38.262 5.745 -1.250 -0.041 C16 YJU 26 YJU N4 N4 N 0 1 Y N N N N N -76.513 -45.090 39.192 4.492 -0.852 -0.059 N4 YJU 27 YJU F1 F1 F 0 1 N N N N N N -77.197 -43.040 37.139 8.010 -0.584 0.202 F1 YJU 28 YJU F2 F2 F 0 1 N N N N N N -76.370 -42.339 38.979 7.050 -0.482 -1.869 F2 YJU 29 YJU F3 F3 F 0 1 N N N N N N -75.117 -42.532 37.160 6.438 1.010 -0.252 F3 YJU 30 YJU C18 C22 C 0 1 N N N N N N -80.903 -48.617 47.509 -5.440 0.469 -0.382 C18 YJU 31 YJU C19 C23 C 0 1 N N N N N N -81.055 -50.146 47.333 -5.751 -0.576 -1.455 C19 YJU 32 YJU O3 O3 O 0 1 N N N N N N -80.269 -51.896 51.674 -9.827 -1.978 0.902 O3 YJU 33 YJU C23 C24 C 0 1 N N N N N N -80.308 -48.903 49.930 -7.504 -0.193 0.860 C23 YJU 34 YJU H1 H1 H 0 1 N N N N N N -77.324 -44.988 41.364 2.561 0.650 -0.480 H1 YJU 35 YJU H2 H2 H 0 1 N N N N N N -79.925 -44.102 45.007 -1.047 3.537 0.443 H2 YJU 36 YJU H3 H3 H 0 1 N N N N N N -79.543 -49.541 45.116 -3.290 -1.360 -0.663 H3 YJU 37 YJU H4 H4 H 0 1 N N N N N N -75.334 -48.202 39.224 2.964 -3.578 1.113 H4 YJU 38 YJU H5 H5 H 0 1 N N N N N N -74.245 -44.848 36.797 7.115 -2.834 0.420 H5 YJU 39 YJU H6 H6 H 0 1 N N N N N N -82.408 -50.726 48.911 -7.487 -1.508 -2.326 H6 YJU 40 YJU H7 H7 H 0 1 N N N N N N -81.178 -51.965 48.488 -7.732 0.184 -1.830 H7 YJU 41 YJU H8 H8 H 0 1 N N N N N N -79.480 -50.896 49.765 -7.350 -2.185 0.056 H8 YJU 42 YJU H9 H9 H 0 1 N N N N N N -81.238 -50.056 51.870 -9.804 -0.461 -0.500 H9 YJU 43 YJU H10 H10 H 0 1 N N N N N N -82.143 -51.313 50.961 -9.556 -2.102 -1.143 H10 YJU 44 YJU H11 H11 H 0 1 N N N N N N -78.911 -48.826 48.310 -5.524 -0.953 1.235 H11 YJU 45 YJU H12 H12 H 0 1 N N N N N N -79.710 -47.263 48.691 -5.768 0.739 1.730 H12 YJU 46 YJU H13 H13 H 0 1 N N N N N N -77.798 -42.810 44.753 2.675 1.221 1.235 H13 YJU 47 YJU H14 H14 H 0 1 N N N N N N -78.026 -41.560 43.483 3.300 2.841 1.626 H14 YJU 48 YJU H15 H15 H 0 1 N N N N N N -79.453 -42.267 44.313 1.849 2.224 2.451 H15 YJU 49 YJU H16 H16 H 0 1 N N N N N N -80.446 -43.148 42.032 1.738 3.495 -1.628 H16 YJU 50 YJU H17 H17 H 0 1 N N N N N N -79.105 -42.155 41.367 3.246 3.520 -0.682 H17 YJU 51 YJU H18 H18 H 0 1 N N N N N N -79.268 -43.879 40.890 2.576 1.971 -1.248 H18 YJU 52 YJU H19 H19 H 0 1 N N N N N N -76.616 -43.830 43.191 1.788 4.766 0.991 H19 YJU 53 YJU H20 H20 H 0 1 N N N N N N -78.296 -48.227 42.742 -0.321 -1.303 -0.519 H20 YJU 54 YJU H21 H21 H 0 1 N N N N N N -73.957 -47.252 37.418 5.318 -4.375 1.170 H21 YJU 55 YJU H22 H22 H 0 1 N N N N N N -81.869 -48.173 47.791 -5.906 1.417 -0.651 H22 YJU 56 YJU H23 H23 H 0 1 N N N N N N -81.881 -50.335 46.632 -5.285 -1.523 -1.186 H23 YJU 57 YJU H24 H24 H 0 1 N N N N N N -80.119 -50.543 46.912 -5.359 -0.238 -2.415 H24 YJU 58 YJU H25 H25 H 0 1 N N N N N N -80.617 -52.236 52.490 -10.783 -2.125 0.907 H25 YJU 59 YJU H26 H26 H 0 1 N N N N N N -79.556 -48.661 50.695 -7.970 0.755 0.591 H26 YJU 60 YJU H27 H27 H 0 1 N N N N N N -81.271 -48.449 50.206 -7.896 -0.531 1.820 H27 YJU 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJU F1 C17 SING N N 1 YJU F3 C17 SING N N 2 YJU C15 C14 DOUB Y N 3 YJU C15 C16 SING Y N 4 YJU C17 C16 SING N N 5 YJU C17 F2 SING N N 6 YJU C14 C13 SING Y N 7 YJU C16 N4 DOUB Y N 8 YJU C13 C12 DOUB Y N 9 YJU N4 C12 SING Y N 10 YJU C12 C11 SING N N 11 YJU C11 O2 DOUB N N 12 YJU C11 N3 SING N N 13 YJU N3 C10 SING N N 14 YJU C3 C2 SING N N 15 YJU O1 C2 SING N N 16 YJU C10 C9 DOUB Y N 17 YJU C10 C4 SING Y N 18 YJU C2 C4 SING N N 19 YJU C2 C1 SING N N 20 YJU C9 C8 SING Y N 21 YJU C4 C5 DOUB Y N 22 YJU C8 C6 SING Y N 23 YJU C8 C7 DOUB Y N 24 YJU C5 C6 SING Y N 25 YJU C6 N1 DOUB Y N 26 YJU C7 N2 SING Y N 27 YJU N1 N2 SING Y N 28 YJU N2 C18 SING N N 29 YJU C19 C18 SING N N 30 YJU C19 C20 SING N N 31 YJU C18 C24 SING N N 32 YJU C24 C23 SING N N 33 YJU C20 C21 SING N N 34 YJU C21 C23 SING N N 35 YJU C21 C22 SING N N 36 YJU C22 O3 SING N N 37 YJU N3 H1 SING N N 38 YJU C5 H2 SING N N 39 YJU C7 H3 SING N N 40 YJU C13 H4 SING N N 41 YJU C15 H5 SING N N 42 YJU C20 H6 SING N N 43 YJU C20 H7 SING N N 44 YJU C21 H8 SING N N 45 YJU C22 H9 SING N N 46 YJU C22 H10 SING N N 47 YJU C24 H11 SING N N 48 YJU C24 H12 SING N N 49 YJU C1 H13 SING N N 50 YJU C1 H14 SING N N 51 YJU C1 H15 SING N N 52 YJU C3 H16 SING N N 53 YJU C3 H17 SING N N 54 YJU C3 H18 SING N N 55 YJU O1 H19 SING N N 56 YJU C9 H20 SING N N 57 YJU C14 H21 SING N N 58 YJU C18 H22 SING N N 59 YJU C19 H23 SING N N 60 YJU C19 H24 SING N N 61 YJU O3 H25 SING N N 62 YJU C23 H26 SING N N 63 YJU C23 H27 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJU SMILES ACDLabs 12.01 "FC(F)(F)c1cccc(n1)C(=O)Nc1cc2cn(nc2cc1C(C)(C)O)C1CCC(CO)CC1" YJU InChI InChI 1.06 "InChI=1S/C24H27F3N4O3/c1-23(2,34)17-11-19-15(12-31(30-19)16-8-6-14(13-32)7-9-16)10-20(17)29-22(33)18-4-3-5-21(28-18)24(25,26)27/h3-5,10-12,14,16,32,34H,6-9,13H2,1-2H3,(H,29,33)/t14-,16-" YJU InChIKey InChI 1.06 JQMIRXOVVPAXPB-KOMQPUFPSA-N YJU SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)c1cc2nn(cc2cc1NC(=O)c3cccc(n3)C(F)(F)F)[C@H]4CC[C@H](CO)CC4" YJU SMILES CACTVS 3.385 "CC(C)(O)c1cc2nn(cc2cc1NC(=O)c3cccc(n3)C(F)(F)F)[CH]4CC[CH](CO)CC4" YJU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(c1cc2c(cc1NC(=O)c3cccc(n3)C(F)(F)F)cn(n2)C4CCC(CC4)CO)O" YJU SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(c1cc2c(cc1NC(=O)c3cccc(n3)C(F)(F)F)cn(n2)C4CCC(CC4)CO)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YJU "SYSTEMATIC NAME" ACDLabs 12.01 "N-{2-[(1r,4r)-4-(hydroxymethyl)cyclohexyl]-6-(2-hydroxypropan-2-yl)-2H-indazol-5-yl}-6-(trifluoromethyl)pyridine-2-carboxamide" YJU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-[4-(hydroxymethyl)cyclohexyl]-6-(2-oxidanylpropan-2-yl)indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJU "Create component" 2023-12-04 RCSB YJU "Initial release" 2024-07-03 RCSB #