data_YJY # _chem_comp.id YJY _chem_comp.name "(6S)-1-[3,5-bis(trifluoromethyl)phenyl]-6-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H32 F6 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-08 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 634.612 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FXA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJY C10 C1 C 0 1 Y N N N N N 9.128 -2.145 24.455 1.404 1.159 0.459 C10 YJY 1 YJY C13 C2 C 0 1 Y N N N N N 11.752 -2.846 23.928 3.323 -0.848 0.424 C13 YJY 2 YJY C15 C3 C 0 1 Y N N N N N 13.793 -4.435 23.999 5.633 -1.863 0.882 C15 YJY 3 YJY C20 C4 C 0 1 N N N N N N 13.174 -5.711 24.552 6.294 -0.695 1.566 C20 YJY 4 YJY C21 C5 C 0 1 Y N N N N N 10.726 -3.725 23.581 2.160 -1.032 1.158 C21 YJY 5 YJY C24 C6 C 0 1 N N N N N N 6.735 0.260 24.263 1.146 4.231 0.586 C24 YJY 6 YJY C26 C7 C 0 1 N N N N N N 6.447 1.649 26.425 2.495 3.644 -1.433 C26 YJY 7 YJY C28 C8 C 0 1 N N N N N N 6.718 -0.926 26.618 0.036 3.204 -1.403 C28 YJY 8 YJY C02 C9 C 0 1 N N N N N N 4.654 -5.040 22.252 -3.808 0.387 2.740 C02 YJY 9 YJY C03 C10 C 0 1 N N N N N N 4.334 -6.010 23.439 -3.937 1.104 4.053 C03 YJY 10 YJY C04 C11 C 0 1 N N N N N N 4.271 -5.312 24.719 -3.165 2.424 4.004 C04 YJY 11 YJY C05 C12 C 0 1 N N N N N N 5.500 -4.594 24.999 -1.761 2.144 3.455 C05 YJY 12 YJY C06 C13 C 0 1 N N S N N N 5.708 -3.453 24.091 -1.882 1.731 1.988 C06 YJY 13 YJY C07 C14 C 0 1 Y N N N N N 7.193 -3.113 24.125 -0.544 1.243 1.495 C07 YJY 14 YJY C09 C15 C 0 1 Y N N N N N 9.380 -3.343 23.860 1.192 -0.027 1.182 C09 YJY 15 YJY C11 C16 C 0 1 Y N N N N N 10.174 -1.256 24.831 2.569 1.327 -0.278 C11 YJY 16 YJY C12 C17 C 0 1 Y N N N N N 11.474 -1.626 24.556 3.521 0.333 -0.297 C12 YJY 17 YJY C14 C18 C 0 1 Y N N N N N 13.211 -3.218 23.698 4.357 -1.913 0.397 C14 YJY 18 YJY C18 C19 C 0 1 Y N N N N N 14.243 -2.377 23.225 4.252 -3.227 -0.140 C18 YJY 19 YJY C19 C20 C 0 1 N N N N N N 14.168 -0.930 22.767 3.046 -3.838 -0.807 C19 YJY 20 YJY C23 C21 C 0 1 N N N N N N 7.365 -0.739 25.249 0.042 3.277 0.126 C23 YJY 21 YJY C25 C22 C 0 1 N N N N N N 6.200 1.534 24.923 2.501 3.717 0.095 C25 YJY 22 YJY C27 C23 C 0 1 N N N N N N 6.136 0.362 27.199 1.391 2.691 -1.894 C27 YJY 23 YJY C30 C24 C 0 1 N N N N N N 6.158 3.491 27.866 4.718 4.196 -2.139 C30 YJY 24 YJY C32 C25 C 0 1 Y N N N N N 5.677 -2.762 21.648 -2.826 -0.105 0.672 C32 YJY 25 YJY C33 C26 C 0 1 Y N N N N N 6.583 -3.051 20.655 -2.475 -1.447 0.739 C33 YJY 26 YJY C34 C27 C 0 1 Y N N N N N 6.890 -2.050 19.762 -2.440 -2.208 -0.412 C34 YJY 27 YJY C35 C28 C 0 1 N N N N N N 7.889 -2.352 18.652 -2.060 -3.665 -0.340 C35 YJY 28 YJY C39 C29 C 0 1 Y N N N N N 6.309 -0.793 19.855 -2.754 -1.636 -1.632 C39 YJY 29 YJY C40 C30 C 0 1 Y N N N N N 5.399 -0.527 20.863 -3.103 -0.300 -1.702 C40 YJY 30 YJY C41 C31 C 0 1 N N N N N N 4.751 0.844 21.001 -3.444 0.319 -3.033 C41 YJY 31 YJY C45 C32 C 0 1 Y N N N N N 5.084 -1.517 21.767 -3.140 0.467 -0.554 C45 YJY 32 YJY F36 F1 F 0 1 N N N N N N 8.919 -1.472 18.729 -2.096 -4.220 -1.623 F36 YJY 33 YJY F37 F2 F 0 1 N N N N N N 8.395 -3.609 18.788 -0.768 -3.784 0.184 F37 YJY 34 YJY F38 F3 F 0 1 N N N N N N 7.251 -2.231 17.460 -2.963 -4.342 0.487 F38 YJY 35 YJY F42 F4 F 0 1 N N N N N N 3.789 0.794 21.969 -2.558 1.369 -3.300 F42 YJY 36 YJY F43 F5 F 0 1 N N N N N N 5.712 1.740 21.360 -3.337 -0.647 -4.039 F43 YJY 37 YJY F44 F6 F 0 1 N N N N N N 4.204 1.214 19.811 -4.753 0.812 -2.996 F44 YJY 38 YJY N08 N1 N 0 1 Y N N N N N 8.156 -3.935 23.665 -0.016 0.091 1.791 N08 YJY 39 YJY N17 N2 N 0 1 Y N N N N N 15.370 -3.100 23.231 5.403 -3.797 0.064 N17 YJY 40 YJY N22 N3 N 0 1 Y N N N N N 7.795 -2.004 24.610 0.287 1.942 0.678 N22 YJY 41 YJY N31 N4 N 0 1 N N N N N N 5.343 -3.754 22.621 -2.868 0.669 1.837 N31 YJY 42 YJY O01 O1 O 0 1 N N N N N N 4.375 -5.245 21.128 -4.598 -0.498 2.489 O01 YJY 43 YJY O16 O2 O 0 1 Y N N N N N 15.071 -4.330 23.702 6.180 -3.059 0.622 O16 YJY 44 YJY O29 O3 O 0 1 N N N N N N 5.573 2.645 26.918 3.761 3.164 -1.892 O29 YJY 45 YJY H1 H1 H 0 1 N N N N N N 13.951 -6.483 24.651 6.122 -0.759 2.641 H1 YJY 46 YJY H2 H2 H 0 1 N N N N N N 12.733 -5.507 25.539 7.366 -0.718 1.368 H2 YJY 47 YJY H3 H3 H 0 1 N N N N N N 12.390 -6.065 23.866 5.874 0.235 1.185 H3 YJY 48 YJY H4 H4 H 0 1 N N N N N N 10.945 -4.673 23.112 2.007 -1.947 1.711 H4 YJY 49 YJY H5 H5 H 0 1 N N N N N N 5.900 -0.240 23.750 0.964 5.224 0.176 H5 YJY 50 YJY H6 H6 H 0 1 N N N N N N 7.499 0.547 23.526 1.151 4.283 1.675 H6 YJY 51 YJY H7 H7 H 0 1 N N N N N N 7.496 1.929 26.599 2.312 4.637 -1.844 H7 YJY 52 YJY H8 H8 H 0 1 N N N N N N 5.906 -1.662 26.522 -0.751 2.525 -1.731 H8 YJY 53 YJY H9 H9 H 0 1 N N N N N N 7.480 -1.309 27.314 -0.147 4.197 -1.813 H9 YJY 54 YJY H10 H10 H 0 1 N N N N N N 3.364 -6.493 23.250 -4.989 1.307 4.253 H10 YJY 55 YJY H11 H11 H 0 1 N N N N N N 5.121 -6.777 23.492 -3.533 0.477 4.849 H11 YJY 56 YJY H12 H12 H 0 1 N N N N N N 3.437 -4.595 24.694 -3.681 3.127 3.351 H12 YJY 57 YJY H13 H13 H 0 1 N N N N N N 4.098 -6.048 25.518 -3.089 2.843 5.008 H13 YJY 58 YJY H14 H14 H 0 1 N N N N N N 6.346 -5.289 24.892 -1.151 3.045 3.533 H14 YJY 59 YJY H15 H15 H 0 1 N N N N N N 5.462 -4.219 26.033 -1.298 1.340 4.027 H15 YJY 60 YJY H16 H16 H 0 1 N N N N N N 5.127 -2.585 24.436 -2.191 2.592 1.396 H16 YJY 61 YJY H17 H17 H 0 1 N N N N N N 9.956 -0.317 25.318 2.728 2.237 -0.838 H17 YJY 62 YJY H18 H18 H 0 1 N N N N N N 12.286 -0.968 24.828 4.429 0.469 -0.866 H18 YJY 63 YJY H19 H19 H 0 1 N N N N N N 15.166 -0.592 22.452 2.425 -4.326 -0.056 H19 YJY 64 YJY H20 H20 H 0 1 N N N N N N 13.470 -0.849 21.921 2.470 -3.056 -1.302 H20 YJY 65 YJY H21 H21 H 0 1 N N N N N N 13.813 -0.301 23.597 3.371 -4.572 -1.543 H21 YJY 66 YJY H22 H22 H 0 1 N N N N N N 8.320 -0.254 25.500 -0.923 3.643 0.476 H22 YJY 67 YJY H23 H23 H 0 1 N N N N N N 6.678 2.396 24.434 3.288 4.396 0.423 H23 YJY 68 YJY H24 H24 H 0 1 N N N N N N 5.114 1.573 24.754 2.684 2.724 0.506 H24 YJY 69 YJY H25 H25 H 0 1 N N N N N N 6.530 0.479 28.219 1.387 2.638 -2.983 H25 YJY 70 YJY H26 H26 H 0 1 N N N N N N 5.043 0.249 27.239 1.574 1.697 -1.483 H26 YJY 71 YJY H27 H27 H 0 1 N N N N N N 5.419 4.235 28.200 4.335 4.872 -2.903 H27 YJY 72 YJY H28 H28 H 0 1 N N N N N N 6.496 2.897 28.728 4.899 4.751 -1.219 H28 YJY 73 YJY H29 H29 H 0 1 N N N N N N 7.019 4.006 27.416 5.651 3.750 -2.484 H29 YJY 74 YJY H30 H30 H 0 1 N N N N N N 7.037 -4.028 20.579 -2.230 -1.894 1.691 H30 YJY 75 YJY H31 H31 H 0 1 N N N N N N 6.567 -0.024 19.142 -2.726 -2.234 -2.531 H31 YJY 76 YJY H32 H32 H 0 1 N N N N N N 4.380 -1.323 22.563 -3.417 1.510 -0.610 H32 YJY 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJY F38 C35 SING N N 1 YJY C35 F36 SING N N 2 YJY C35 F37 SING N N 3 YJY C35 C34 SING N N 4 YJY C34 C39 DOUB Y N 5 YJY C34 C33 SING Y N 6 YJY F44 C41 SING N N 7 YJY C39 C40 SING Y N 8 YJY C33 C32 DOUB Y N 9 YJY C40 C41 SING N N 10 YJY C40 C45 DOUB Y N 11 YJY C41 F43 SING N N 12 YJY C41 F42 SING N N 13 YJY O01 C02 DOUB N N 14 YJY C32 C45 SING Y N 15 YJY C32 N31 SING N N 16 YJY C02 N31 SING N N 17 YJY C02 C03 SING N N 18 YJY N31 C06 SING N N 19 YJY C19 C18 SING N N 20 YJY C18 N17 DOUB Y N 21 YJY C18 C14 SING Y N 22 YJY N17 O16 SING Y N 23 YJY C03 C04 SING N N 24 YJY C21 C09 DOUB Y N 25 YJY C21 C13 SING Y N 26 YJY N08 C09 SING Y N 27 YJY N08 C07 DOUB Y N 28 YJY C14 C13 SING N N 29 YJY C14 C15 DOUB Y N 30 YJY O16 C15 SING Y N 31 YJY C09 C10 SING Y N 32 YJY C13 C12 DOUB Y N 33 YJY C15 C20 SING N N 34 YJY C06 C07 SING N N 35 YJY C06 C05 SING N N 36 YJY C07 N22 SING Y N 37 YJY C24 C25 SING N N 38 YJY C24 C23 SING N N 39 YJY C10 N22 SING Y N 40 YJY C10 C11 DOUB Y N 41 YJY C12 C11 SING Y N 42 YJY N22 C23 SING N N 43 YJY C04 C05 SING N N 44 YJY C25 C26 SING N N 45 YJY C23 C28 SING N N 46 YJY C26 O29 SING N N 47 YJY C26 C27 SING N N 48 YJY C28 C27 SING N N 49 YJY O29 C30 SING N N 50 YJY C20 H1 SING N N 51 YJY C20 H2 SING N N 52 YJY C20 H3 SING N N 53 YJY C21 H4 SING N N 54 YJY C24 H5 SING N N 55 YJY C24 H6 SING N N 56 YJY C26 H7 SING N N 57 YJY C28 H8 SING N N 58 YJY C28 H9 SING N N 59 YJY C03 H10 SING N N 60 YJY C03 H11 SING N N 61 YJY C04 H12 SING N N 62 YJY C04 H13 SING N N 63 YJY C05 H14 SING N N 64 YJY C05 H15 SING N N 65 YJY C06 H16 SING N N 66 YJY C11 H17 SING N N 67 YJY C12 H18 SING N N 68 YJY C19 H19 SING N N 69 YJY C19 H20 SING N N 70 YJY C19 H21 SING N N 71 YJY C23 H22 SING N N 72 YJY C25 H23 SING N N 73 YJY C25 H24 SING N N 74 YJY C27 H25 SING N N 75 YJY C27 H26 SING N N 76 YJY C30 H27 SING N N 77 YJY C30 H28 SING N N 78 YJY C30 H29 SING N N 79 YJY C33 H30 SING N N 80 YJY C39 H31 SING N N 81 YJY C45 H32 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJY SMILES ACDLabs 12.01 "Cc1noc(C)c1c1cc2nc(C3CCCC(=O)N3c3cc(cc(c3)C(F)(F)F)C(F)(F)F)n(C3CCC(OC)CC3)c2cc1" YJY InChI InChI 1.06 "InChI=1S/C32H32F6N4O3/c1-17-29(18(2)45-40-17)19-7-12-26-25(13-19)39-30(42(26)22-8-10-24(44-3)11-9-22)27-5-4-6-28(43)41(27)23-15-20(31(33,34)35)14-21(16-23)32(36,37)38/h7,12-16,22,24,27H,4-6,8-11H2,1-3H3/t22-,24+,27-/m0/s1" YJY InChIKey InChI 1.06 YULWSGWLJURFFP-LLGBQNBKSA-N YJY SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1CC[C@@H](CC1)n2c(nc3cc(ccc23)c4c(C)onc4C)[C@@H]5CCCC(=O)N5c6cc(cc(c6)C(F)(F)F)C(F)(F)F" YJY SMILES CACTVS 3.385 "CO[CH]1CC[CH](CC1)n2c(nc3cc(ccc23)c4c(C)onc4C)[CH]5CCCC(=O)N5c6cc(cc(c6)C(F)(F)F)C(F)(F)F" YJY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3C4CCC(CC4)OC)[C@@H]5CCCC(=O)N5c6cc(cc(c6)C(F)(F)F)C(F)(F)F" YJY SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3C4CCC(CC4)OC)C5CCCC(=O)N5c6cc(cc(c6)C(F)(F)F)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YJY "SYSTEMATIC NAME" ACDLabs 12.01 "(6S)-1-[3,5-bis(trifluoromethyl)phenyl]-6-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one" YJY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(6~{S})-1-[3,5-bis(trifluoromethyl)phenyl]-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(4-methoxycyclohexyl)benzimidazol-2-yl]piperidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJY "Create component" 2023-02-08 RCSB YJY "Initial release" 2024-02-07 RCSB #