data_YK2 # _chem_comp.id YK2 _chem_comp.name "[6-[[4-[2-(dimethylamino)-1,3-benzothiazol-6-yl]-5-fluoranyl-pyrimidin-2-yl]amino]pyridin-3-yl]-(4-ethylpiperazin-1-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 F N8 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-12 _chem_comp.pdbx_modified_date 2022-04-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.598 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YK2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EJV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YK2 C01 C1 C 0 1 Y N N -9.480 -0.658 62.463 -4.569 0.090 1.106 C01 YK2 1 YK2 C02 C2 C 0 1 Y N N -9.918 -0.045 61.330 -4.115 -1.238 1.088 C02 YK2 2 YK2 C03 C3 C 0 1 N N N -9.451 -2.188 62.548 -5.982 0.394 1.400 C03 YK2 3 YK2 C04 C4 C 0 1 Y N N -9.106 0.097 63.581 -3.662 1.119 0.849 C04 YK2 4 YK2 C05 C5 C 0 1 N N N -8.551 -0.972 52.843 9.799 -2.721 0.720 C05 YK2 5 YK2 C06 C6 C 0 1 Y N N -9.966 1.302 61.286 -2.796 -1.474 0.812 C06 YK2 6 YK2 C07 C7 C 0 1 Y N N -9.581 2.065 62.380 -1.947 -0.397 0.558 C07 YK2 7 YK2 C08 C8 C 0 1 N N N -8.936 1.007 51.251 10.580 -0.899 -0.864 C08 YK2 8 YK2 C09 C9 C 0 1 N N N -3.459 -4.260 62.783 -11.093 -1.168 -2.020 C09 YK2 9 YK2 C10 C10 C 0 1 Y N N -10.162 4.300 61.295 0.267 0.434 0.135 C10 YK2 10 YK2 C11 C11 C 0 1 N N N -4.734 -4.931 63.312 -9.600 -1.124 -2.349 C11 YK2 11 YK2 C12 C12 C 0 1 Y N N -9.893 4.817 58.885 2.424 1.189 -0.179 C12 YK2 12 YK2 C13 C13 C 0 1 Y N N -9.803 4.396 57.433 3.866 0.913 -0.372 C13 YK2 13 YK2 C14 C14 C 0 1 Y N N -10.227 6.295 59.261 1.949 2.507 -0.152 C14 YK2 14 YK2 C15 C15 C 0 1 N N N -6.888 -5.023 63.238 -7.393 -1.310 -1.372 C15 YK2 15 YK2 C16 C16 C 0 1 Y N N -10.699 6.578 60.622 0.592 2.714 0.031 C16 YK2 16 YK2 C17 C17 C 0 1 Y N N -9.425 3.088 57.235 4.463 -0.164 0.273 C17 YK2 17 YK2 C18 C18 C 0 1 Y N N -9.306 2.569 55.955 5.816 -0.420 0.090 C18 YK2 18 YK2 C19 C19 C 0 1 Y N N -9.571 3.364 54.899 6.586 0.401 -0.743 C19 YK2 19 YK2 C20 C20 C 0 1 Y N N -10.083 5.201 56.360 4.632 1.730 -1.209 C20 YK2 20 YK2 C21 C21 C 0 1 N N N -5.930 -3.179 63.662 -9.058 0.125 -0.347 C21 YK2 21 YK2 C22 C22 C 0 1 Y N N -9.965 4.684 55.088 5.957 1.488 -1.388 C22 YK2 22 YK2 C23 C23 C 0 1 N N N -8.250 -4.399 62.899 -6.644 -1.474 -0.045 C23 YK2 23 YK2 C24 C24 C 0 1 Y N N -8.966 1.321 53.701 8.232 -1.018 -0.126 C24 YK2 24 YK2 C25 C25 C 0 1 N N N -6.948 -2.243 63.008 -8.377 0.020 1.023 C25 YK2 25 YK2 F01 F1 F 0 1 N N N -11.031 6.967 58.379 2.795 3.550 -0.296 F01 YK2 26 YK2 N01 N1 N 0 1 N N N -8.214 -2.934 62.823 -6.962 -0.324 0.816 N01 YK2 27 YK2 N02 N2 N 0 1 Y N N -9.154 1.462 63.510 -2.400 0.849 0.587 N02 YK2 28 YK2 N03 N3 N 0 1 N N N -9.612 3.520 62.386 -0.610 -0.632 0.278 N03 YK2 29 YK2 N04 N4 N 0 1 N N N -5.843 -4.281 62.964 -8.823 -1.113 -1.103 N04 YK2 30 YK2 N05 N5 N 0 1 Y N N -9.637 3.856 60.002 1.556 0.189 -0.033 N05 YK2 31 YK2 N06 N6 N 0 1 N N N -8.779 0.445 52.585 9.510 -1.535 -0.091 N06 YK2 32 YK2 N07 N7 N 0 1 Y N N -10.105 5.666 61.551 -0.210 1.669 0.165 N07 YK2 33 YK2 N08 N8 N 0 1 Y N N -9.390 2.688 53.695 7.875 0.017 -0.807 N08 YK2 34 YK2 O01 O1 O 0 1 N N N -10.490 -2.757 62.395 -6.264 1.293 2.169 O01 YK2 35 YK2 S01 S1 S 0 1 Y N N -8.813 1.010 55.480 6.858 -1.679 0.749 S01 YK2 36 YK2 H1 H1 H 0 1 N N N -10.224 -0.631 60.476 -4.792 -2.055 1.288 H1 YK2 37 YK2 H2 H2 H 0 1 N N N -8.784 -0.392 64.488 -3.998 2.146 0.864 H2 YK2 38 YK2 H3 H3 H 0 1 N N N -8.467 -1.139 53.927 10.092 -2.412 1.723 H3 YK2 39 YK2 H4 H4 H 0 1 N N N -9.394 -1.557 52.446 8.908 -3.347 0.778 H4 YK2 40 YK2 H5 H5 H 0 1 N N N -7.620 -1.289 52.350 10.611 -3.286 0.262 H5 YK2 41 YK2 H6 H6 H 0 1 N N N -10.309 1.794 60.388 -2.415 -2.484 0.790 H6 YK2 42 YK2 H7 H7 H 0 1 N N N -9.096 2.093 51.326 10.623 -1.344 -1.858 H7 YK2 43 YK2 H8 H8 H 0 1 N N N -8.029 0.810 50.661 10.378 0.169 -0.952 H8 YK2 44 YK2 H9 H9 H 0 1 N N N -9.802 0.542 50.757 11.533 -1.048 -0.357 H9 YK2 45 YK2 H10 H10 H 0 1 N N N -2.580 -4.840 63.101 -11.313 -2.069 -1.447 H10 YK2 46 YK2 H11 H11 H 0 1 N N N -3.494 -4.221 61.684 -11.361 -0.289 -1.432 H11 YK2 47 YK2 H12 H12 H 0 1 N N N -3.389 -3.238 63.184 -11.670 -1.176 -2.945 H12 YK2 48 YK2 H14 H14 H 0 1 N N N -4.785 -5.954 62.910 -9.332 -2.002 -2.937 H14 YK2 49 YK2 H15 H15 H 0 1 N N N -4.680 -4.971 64.410 -9.380 -0.223 -2.922 H15 YK2 50 YK2 H18 H18 H 0 1 N N N -6.875 -5.242 64.316 -7.001 -0.445 -1.906 H18 YK2 51 YK2 H19 H19 H 0 1 N N N -6.795 -5.961 62.672 -7.257 -2.205 -1.979 H19 YK2 52 YK2 H20 H20 H 0 1 N N N -11.394 7.362 60.884 0.192 3.717 0.057 H20 YK2 53 YK2 H22 H22 H 0 1 N N N -9.218 2.458 58.087 3.875 -0.802 0.918 H22 YK2 54 YK2 H23 H23 H 0 1 N N N -10.392 6.225 56.509 4.167 2.565 -1.714 H23 YK2 55 YK2 H24 H24 H 0 1 N N N -6.255 -3.417 64.685 -10.129 0.270 -0.210 H24 YK2 56 YK2 H25 H25 H 0 1 N N N -4.947 -2.687 63.695 -8.643 0.970 -0.896 H25 YK2 57 YK2 H26 H26 H 0 1 N N N -10.180 5.308 54.233 6.535 2.133 -2.034 H26 YK2 58 YK2 H27 H27 H 0 1 N N N -8.971 -4.691 63.677 -6.961 -2.395 0.443 H27 YK2 59 YK2 H28 H28 H 0 1 N N N -8.581 -4.791 61.926 -5.571 -1.509 -0.232 H28 YK2 60 YK2 H29 H29 H 0 1 N N N -6.566 -1.916 62.030 -8.449 0.976 1.541 H29 YK2 61 YK2 H30 H30 H 0 1 N N N -7.103 -1.366 63.653 -8.862 -0.755 1.615 H30 YK2 62 YK2 H31 H31 H 0 1 N N N -9.237 4.003 63.178 -0.287 -1.542 0.183 H31 YK2 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YK2 C08 N06 SING N N 1 YK2 N06 C05 SING N N 2 YK2 N06 C24 SING N N 3 YK2 N08 C24 DOUB Y N 4 YK2 N08 C19 SING Y N 5 YK2 C24 S01 SING Y N 6 YK2 C19 C22 DOUB Y N 7 YK2 C19 C18 SING Y N 8 YK2 C22 C20 SING Y N 9 YK2 S01 C18 SING Y N 10 YK2 C18 C17 DOUB Y N 11 YK2 C20 C13 DOUB Y N 12 YK2 C17 C13 SING Y N 13 YK2 C13 C12 SING N N 14 YK2 F01 C14 SING N N 15 YK2 C12 C14 SING Y N 16 YK2 C12 N05 DOUB Y N 17 YK2 C14 C16 DOUB Y N 18 YK2 N05 C10 SING Y N 19 YK2 C16 N07 SING Y N 20 YK2 C06 C02 DOUB Y N 21 YK2 C06 C07 SING Y N 22 YK2 C10 N07 DOUB Y N 23 YK2 C10 N03 SING N N 24 YK2 C02 C01 SING Y N 25 YK2 C07 N03 SING N N 26 YK2 C07 N02 DOUB Y N 27 YK2 O01 C03 DOUB N N 28 YK2 C01 C03 SING N N 29 YK2 C01 C04 DOUB Y N 30 YK2 C03 N01 SING N N 31 YK2 C09 C11 SING N N 32 YK2 N01 C23 SING N N 33 YK2 N01 C25 SING N N 34 YK2 C23 C15 SING N N 35 YK2 N04 C15 SING N N 36 YK2 N04 C11 SING N N 37 YK2 N04 C21 SING N N 38 YK2 C25 C21 SING N N 39 YK2 N02 C04 SING Y N 40 YK2 C02 H1 SING N N 41 YK2 C04 H2 SING N N 42 YK2 C05 H3 SING N N 43 YK2 C05 H4 SING N N 44 YK2 C05 H5 SING N N 45 YK2 C06 H6 SING N N 46 YK2 C08 H7 SING N N 47 YK2 C08 H8 SING N N 48 YK2 C08 H9 SING N N 49 YK2 C09 H10 SING N N 50 YK2 C09 H11 SING N N 51 YK2 C09 H12 SING N N 52 YK2 C11 H14 SING N N 53 YK2 C11 H15 SING N N 54 YK2 C15 H18 SING N N 55 YK2 C15 H19 SING N N 56 YK2 C16 H20 SING N N 57 YK2 C17 H22 SING N N 58 YK2 C20 H23 SING N N 59 YK2 C21 H24 SING N N 60 YK2 C21 H25 SING N N 61 YK2 C22 H26 SING N N 62 YK2 C23 H27 SING N N 63 YK2 C23 H28 SING N N 64 YK2 C25 H29 SING N N 65 YK2 C25 H30 SING N N 66 YK2 N03 H31 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YK2 InChI InChI 1.03 "InChI=1S/C25H27FN8OS/c1-4-33-9-11-34(12-10-33)23(35)17-6-8-21(27-14-17)30-24-28-15-18(26)22(31-24)16-5-7-19-20(13-16)36-25(29-19)32(2)3/h5-8,13-15H,4,9-12H2,1-3H3,(H,27,28,30,31)" YK2 InChIKey InChI 1.03 AWBAKFAKVVKANT-UHFFFAOYSA-N YK2 SMILES_CANONICAL CACTVS 3.385 "CCN1CCN(CC1)C(=O)c2ccc(Nc3ncc(F)c(n3)c4ccc5nc(sc5c4)N(C)C)nc2" YK2 SMILES CACTVS 3.385 "CCN1CCN(CC1)C(=O)c2ccc(Nc3ncc(F)c(n3)c4ccc5nc(sc5c4)N(C)C)nc2" YK2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1CCN(CC1)C(=O)c2ccc(nc2)Nc3ncc(c(n3)c4ccc5c(c4)sc(n5)N(C)C)F" YK2 SMILES "OpenEye OEToolkits" 2.0.7 "CCN1CCN(CC1)C(=O)c2ccc(nc2)Nc3ncc(c(n3)c4ccc5c(c4)sc(n5)N(C)C)F" # _pdbx_chem_comp_identifier.comp_id YK2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[6-[[4-[2-(dimethylamino)-1,3-benzothiazol-6-yl]-5-fluoranyl-pyrimidin-2-yl]amino]pyridin-3-yl]-(4-ethylpiperazin-1-yl)methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YK2 "Create component" 2021-04-12 PDBJ YK2 "Initial release" 2022-04-06 RCSB ##