data_YK3 # _chem_comp.id YK3 _chem_comp.name "tert-butyl [(6S,10P)-4-{4-[(ethanesulfonyl)amino]phenyl}-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H31 N5 O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.675 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YK3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G46 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YK3 O3 O1 O 0 1 N N N N N N 129.974 113.680 93.657 -2.021 -2.712 -1.392 O3 YK3 1 YK3 C16 C1 C 0 1 N N N N N N 130.813 114.295 93.042 -2.865 -2.242 -0.666 C16 YK3 2 YK3 O2 O2 O 0 1 N N N N N N 131.538 115.339 93.477 -3.509 -3.029 0.210 O2 YK3 3 YK3 C17 C2 C 0 1 N N N N N N 131.384 115.910 94.837 -3.141 -4.433 0.231 C17 YK3 4 YK3 C20 C3 C 0 1 N N N N N N 129.959 116.412 94.974 -3.974 -5.164 1.285 C20 YK3 5 YK3 C19 C4 C 0 1 N N N N N N 131.685 114.828 95.847 -3.403 -5.049 -1.145 C19 YK3 6 YK3 C18 C5 C 0 1 N N N N N N 132.381 117.038 94.960 -1.655 -4.565 0.574 C18 YK3 7 YK3 C15 C6 C 0 1 N N N N N N 131.119 113.997 91.602 -3.191 -0.773 -0.740 C15 YK3 8 YK3 C14 C7 C 0 1 N N S N N N 130.680 115.230 90.816 -2.322 -0.112 -1.812 C14 YK3 9 YK3 C22 C8 C 0 1 Y N N N N N 130.632 115.001 89.339 -2.725 1.331 -1.967 C22 YK3 10 YK3 N3 N1 N 0 1 Y N N N N N 130.729 113.923 88.579 -3.176 1.924 -3.035 N3 YK3 11 YK3 N4 N2 N 0 1 Y N N N N N 130.648 114.337 87.239 -3.397 3.168 -2.781 N4 YK3 12 YK3 C23 C9 C 0 1 Y N N N N N 130.517 115.636 87.224 -3.100 3.429 -1.533 C23 YK3 13 YK3 C24 C10 C 0 1 N N N N N N 130.394 116.514 86.036 -3.211 4.763 -0.842 C24 YK3 14 YK3 N2 N3 N 0 1 Y N N N N N 130.491 116.088 88.522 -2.674 2.266 -0.983 N2 YK3 15 YK3 C21 C11 C 0 1 Y N N N N N 130.400 117.389 89.045 -2.263 2.015 0.329 C21 YK3 16 YK3 C4 C12 C 0 1 Y N N N N N 129.726 117.795 90.231 -1.289 1.100 0.670 C4 YK3 17 YK3 C2 C13 C 0 1 Y N N N N N 129.918 119.197 90.542 -1.114 1.012 2.110 C2 YK3 18 YK3 C3 C14 C 0 1 N N N N N N 129.305 119.873 91.729 -0.144 0.062 2.763 C3 YK3 19 YK3 S1 S1 S 0 1 Y N N N N N 131.200 118.749 88.371 -2.888 2.788 1.715 S1 YK3 20 YK3 C1 C15 C 0 1 Y N N N N N 130.684 119.842 89.616 -1.883 1.842 2.795 C1 YK3 21 YK3 C C16 C 0 1 N N N N N N 131.054 121.287 89.562 -1.895 1.957 4.297 C YK3 22 YK3 N1 N4 N 0 1 N N N N N N 129.396 115.668 91.365 -0.915 -0.176 -1.411 N1 YK3 23 YK3 C5 C17 C 0 1 N N N N N N 128.980 116.845 91.069 -0.487 0.324 -0.296 C5 YK3 24 YK3 C6 C18 C 0 1 Y N N N N N 127.640 117.202 91.618 0.937 0.097 0.041 C6 YK3 25 YK3 C13 C19 C 0 1 Y N N N N N 126.800 118.085 90.947 1.571 -1.080 -0.362 C13 YK3 26 YK3 C12 C20 C 0 1 Y N N N N N 125.550 118.394 91.447 2.896 -1.288 -0.048 C12 YK3 27 YK3 C9 C21 C 0 1 Y N N N N N 125.118 117.811 92.626 3.601 -0.328 0.670 C9 YK3 28 YK3 C8 C22 C 0 1 Y N N N N N 125.943 116.928 93.300 2.971 0.845 1.073 C8 YK3 29 YK3 C7 C23 C 0 1 Y N N N N N 127.194 116.628 92.801 1.648 1.061 0.757 C7 YK3 30 YK3 N N5 N 0 1 N N N N N N 123.841 118.059 93.201 4.941 -0.541 0.986 N YK3 31 YK3 S S2 S 0 1 N N N N N N 123.031 119.464 93.405 6.101 -0.405 -0.188 S YK3 32 YK3 O O3 O 0 1 N N N N N N 122.942 120.109 92.130 7.320 -0.669 0.492 O YK3 33 YK3 O1 O4 O 0 1 N N N N N N 121.823 119.130 94.094 5.645 -1.255 -1.231 O1 YK3 34 YK3 C10 C24 C 0 1 N N N N N N 123.844 120.625 94.432 6.022 1.333 -0.702 C10 YK3 35 YK3 C11 C25 C 0 1 N N N N N N 124.290 120.056 95.765 6.995 1.567 -1.859 C11 YK3 36 YK3 H1 H1 H 0 1 N N N N N N 129.816 116.842 95.976 -5.032 -5.070 1.041 H1 YK3 37 YK3 H2 H2 H 0 1 N N N N N N 129.767 117.183 94.213 -3.697 -6.218 1.300 H2 YK3 38 YK3 H3 H3 H 0 1 N N N N N N 129.260 115.575 94.831 -3.787 -4.725 2.265 H3 YK3 39 YK3 H4 H4 H 0 1 N N N N N N 131.576 115.234 96.864 -2.809 -4.529 -1.896 H4 YK3 40 YK3 H5 H5 H 0 1 N N N N N N 130.984 113.992 95.709 -3.126 -6.104 -1.129 H5 YK3 41 YK3 H6 H6 H 0 1 N N N N N N 132.715 114.470 95.704 -4.461 -4.955 -1.389 H6 YK3 42 YK3 H7 H7 H 0 1 N N N N N N 132.300 117.492 95.959 -1.468 -4.126 1.554 H7 YK3 43 YK3 H8 H8 H 0 1 N N N N N N 133.398 116.645 94.817 -1.378 -5.619 0.589 H8 YK3 44 YK3 H9 H9 H 0 1 N N N N N N 132.170 117.798 94.194 -1.061 -4.044 -0.177 H9 YK3 45 YK3 H10 H10 H 0 1 N N N N N N 130.559 113.111 91.268 -4.243 -0.646 -0.996 H10 YK3 46 YK3 H11 H11 H 0 1 N N N N N N 132.197 113.822 91.468 -2.993 -0.308 0.225 H11 YK3 47 YK3 H12 H12 H 0 1 N N N N N N 131.420 116.021 91.007 -2.455 -0.632 -2.761 H12 YK3 48 YK3 H13 H13 H 0 1 N N N N N N 130.429 115.902 85.122 -4.203 4.862 -0.400 H13 YK3 49 YK3 H14 H14 H 0 1 N N N N N N 129.438 117.056 86.078 -2.456 4.831 -0.059 H14 YK3 50 YK3 H15 H15 H 0 1 N N N N N N 131.224 117.236 86.026 -3.056 5.562 -1.567 H15 YK3 51 YK3 H16 H16 H 0 1 N N N N N N 128.313 120.263 91.458 0.795 0.580 2.960 H16 YK3 52 YK3 H17 H17 H 0 1 N N N N N N 129.202 119.149 92.551 -0.564 -0.297 3.703 H17 YK3 53 YK3 H18 H18 H 0 1 N N N N N N 129.950 120.704 92.051 0.039 -0.783 2.100 H18 YK3 54 YK3 H19 H19 H 0 1 N N N N N N 131.656 121.478 88.661 -2.618 2.714 4.598 H19 YK3 55 YK3 H20 H20 H 0 1 N N N N N N 130.140 121.898 89.529 -2.171 0.997 4.733 H20 YK3 56 YK3 H21 H21 H 0 1 N N N N N N 131.638 121.549 90.456 -0.903 2.243 4.647 H21 YK3 57 YK3 H22 H22 H 0 1 N N N N N N 127.130 118.535 90.022 1.024 -1.826 -0.920 H22 YK3 58 YK3 H23 H23 H 0 1 N N N N N N 124.912 119.088 90.920 3.387 -2.198 -0.360 H23 YK3 59 YK3 H24 H24 H 0 1 N N N N N N 125.607 116.472 94.220 3.520 1.589 1.631 H24 YK3 60 YK3 H25 H25 H 0 1 N N N N N N 127.832 115.940 93.336 1.160 1.974 1.066 H25 YK3 61 YK3 H26 H26 H 0 1 N N N N N N 123.217 117.495 92.660 5.194 -0.770 1.894 H26 YK3 62 YK3 H27 H27 H 0 1 N N N N N N 124.732 120.997 93.899 5.008 1.570 -1.026 H27 YK3 63 YK3 H28 H28 H 0 1 N N N N N N 123.155 121.460 94.625 6.294 1.973 0.137 H28 YK3 64 YK3 H29 H29 H 0 1 N N N N N N 124.790 120.841 96.351 8.008 1.330 -1.535 H29 YK3 65 YK3 H30 H30 H 0 1 N N N N N N 123.413 119.688 96.318 6.722 0.927 -2.698 H30 YK3 66 YK3 H31 H31 H 0 1 N N N N N N 124.990 119.225 95.593 6.947 2.611 -2.168 H31 YK3 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YK3 C24 C23 SING N N 1 YK3 C23 N4 DOUB Y N 2 YK3 C23 N2 SING Y N 3 YK3 N4 N3 SING Y N 4 YK3 S1 C21 SING Y N 5 YK3 S1 C1 SING Y N 6 YK3 N2 C21 SING N N 7 YK3 N2 C22 SING Y N 8 YK3 N3 C22 DOUB Y N 9 YK3 C21 C4 DOUB Y N 10 YK3 C22 C14 SING N N 11 YK3 C C1 SING N N 12 YK3 C1 C2 DOUB Y N 13 YK3 C4 C2 SING Y N 14 YK3 C4 C5 SING N N 15 YK3 C2 C3 SING N N 16 YK3 C14 N1 SING N N 17 YK3 C14 C15 SING N N 18 YK3 C13 C12 DOUB Y N 19 YK3 C13 C6 SING Y N 20 YK3 C5 N1 DOUB N N 21 YK3 C5 C6 SING N N 22 YK3 C12 C9 SING Y N 23 YK3 C15 C16 SING N N 24 YK3 C6 C7 DOUB Y N 25 YK3 O S DOUB N N 26 YK3 C9 N SING N N 27 YK3 C9 C8 DOUB Y N 28 YK3 C7 C8 SING Y N 29 YK3 C16 O2 SING N N 30 YK3 C16 O3 DOUB N N 31 YK3 N S SING N N 32 YK3 S O1 DOUB N N 33 YK3 S C10 SING N N 34 YK3 O2 C17 SING N N 35 YK3 C10 C11 SING N N 36 YK3 C17 C18 SING N N 37 YK3 C17 C20 SING N N 38 YK3 C17 C19 SING N N 39 YK3 C20 H1 SING N N 40 YK3 C20 H2 SING N N 41 YK3 C20 H3 SING N N 42 YK3 C19 H4 SING N N 43 YK3 C19 H5 SING N N 44 YK3 C19 H6 SING N N 45 YK3 C18 H7 SING N N 46 YK3 C18 H8 SING N N 47 YK3 C18 H9 SING N N 48 YK3 C15 H10 SING N N 49 YK3 C15 H11 SING N N 50 YK3 C14 H12 SING N N 51 YK3 C24 H13 SING N N 52 YK3 C24 H14 SING N N 53 YK3 C24 H15 SING N N 54 YK3 C3 H16 SING N N 55 YK3 C3 H17 SING N N 56 YK3 C3 H18 SING N N 57 YK3 C H19 SING N N 58 YK3 C H20 SING N N 59 YK3 C H21 SING N N 60 YK3 C13 H22 SING N N 61 YK3 C12 H23 SING N N 62 YK3 C8 H24 SING N N 63 YK3 C7 H25 SING N N 64 YK3 N H26 SING N N 65 YK3 C10 H27 SING N N 66 YK3 C10 H28 SING N N 67 YK3 C11 H29 SING N N 68 YK3 C11 H30 SING N N 69 YK3 C11 H31 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YK3 SMILES ACDLabs 12.01 "CCS(=O)(=O)Nc1ccc(cc1)C1=NC(CC(=O)OC(C)(C)C)c2nnc(C)n2c2sc(C)c(C)c21" YK3 InChI InChI 1.06 "InChI=1S/C25H31N5O4S2/c1-8-36(32,33)29-18-11-9-17(10-12-18)22-21-14(2)15(3)35-24(21)30-16(4)27-28-23(30)19(26-22)13-20(31)34-25(5,6)7/h9-12,19,29H,8,13H2,1-7H3/t19-/m0/s1" YK3 InChIKey InChI 1.06 XORZMCOMRGZMHU-IBGZPJMESA-N YK3 SMILES_CANONICAL CACTVS 3.385 "CC[S](=O)(=O)Nc1ccc(cc1)C2=N[C@@H](CC(=O)OC(C)(C)C)c3nnc(C)n3c4sc(C)c(C)c24" YK3 SMILES CACTVS 3.385 "CC[S](=O)(=O)Nc1ccc(cc1)C2=N[CH](CC(=O)OC(C)(C)C)c3nnc(C)n3c4sc(C)c(C)c24" YK3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCS(=O)(=O)Nc1ccc(cc1)C2=N[C@H](c3nnc(n3-c4c2c(c(s4)C)C)C)CC(=O)OC(C)(C)C" YK3 SMILES "OpenEye OEToolkits" 2.0.7 "CCS(=O)(=O)Nc1ccc(cc1)C2=NC(c3nnc(n3-c4c2c(c(s4)C)C)C)CC(=O)OC(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YK3 "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(6S,10P)-4-{4-[(ethanesulfonyl)amino]phenyl}-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetate" YK3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl 2-[(9~{S})-7-[4-(ethylsulfonylamino)phenyl]-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YK3 "Create component" 2023-02-09 RCSB YK3 "Initial release" 2023-03-08 RCSB YK3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YK3 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #