data_YK8 # _chem_comp.id YK8 _chem_comp.name "20alpha-hydroxy-20-(5-methylhexyl)cholesterol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H48 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-17 _chem_comp.pdbx_modified_date 2021-01-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 416.680 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YK8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AZN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YK8 C3 C1 C 0 1 N N S 11.047 19.222 10.124 7.118 -0.342 0.025 C3 YK8 1 YK8 C15 C2 C 0 1 N N N 16.229 23.524 6.449 -0.014 2.392 -0.098 C15 YK8 2 YK8 C16 C3 C 0 1 N N N 16.357 24.438 5.230 -1.436 2.038 -0.612 C16 YK8 3 YK8 C17 C4 C 0 1 N N S 14.934 24.722 4.735 -1.425 0.520 -0.917 C17 YK8 4 YK8 C20 C5 C 0 1 N N S 14.857 26.105 4.062 -2.510 -0.192 -0.106 C20 YK8 5 YK8 C22 C6 C 0 1 N N N 15.752 26.072 2.825 -3.883 0.356 -0.500 C22 YK8 6 YK8 C23 C7 C 0 1 N N N 15.332 27.095 1.773 -4.968 -0.355 0.311 C23 YK8 7 YK8 C24 C8 C 0 1 N N N 16.440 28.099 1.477 -6.341 0.193 -0.083 C24 YK8 8 YK8 C25 C9 C 0 1 N N N 17.700 27.403 0.977 -7.426 -0.518 0.728 C25 YK8 9 YK8 C26 C10 C 0 1 N N N 18.594 28.382 0.226 -8.799 0.030 0.335 C26 YK8 10 YK8 C21 C11 C 0 1 N N N 13.448 26.519 3.649 -2.459 -1.694 -0.393 C21 YK8 11 YK8 C2 C12 C 0 1 N N N 10.104 20.267 9.538 6.374 -1.640 -0.295 C2 YK8 12 YK8 C13 C13 C 0 1 N N S 14.040 24.376 5.936 -0.043 0.033 -0.492 C13 YK8 13 YK8 C18 C14 C 0 1 N N N 14.005 25.451 7.014 -0.060 -0.353 0.988 C18 YK8 14 YK8 C12 C15 C 0 1 N N N 12.623 23.912 5.608 0.559 -1.090 -1.315 C12 YK8 15 YK8 C11 C16 C 0 1 N N N 11.941 23.372 6.865 1.938 -1.404 -0.713 C11 YK8 16 YK8 C9 C17 C 0 1 N N S 12.718 22.208 7.482 2.841 -0.174 -0.695 C9 YK8 17 YK8 C10 C18 C 0 1 N N R 12.029 21.698 8.743 4.160 -0.515 -0.022 C10 YK8 18 YK8 C19 C19 C 0 1 N N N 11.709 22.864 9.673 3.864 -1.407 1.185 C19 YK8 19 YK8 C27 C20 C 0 1 N N N 19.953 27.764 -0.076 -9.089 -0.322 -1.126 C27 YK8 20 YK8 C28 C21 C 0 1 N N N 17.921 28.855 -1.057 -9.872 -0.590 1.232 C28 YK8 21 YK8 C1 C22 C 0 1 N N N 10.743 20.979 8.351 5.046 -1.316 -0.981 C1 YK8 22 YK8 C4 C23 C 0 1 N N N 12.313 19.913 10.613 6.303 0.478 1.030 C4 YK8 23 YK8 C5 C24 C 0 1 N N N 12.910 20.726 9.490 4.911 0.690 0.459 C5 YK8 24 YK8 C6 C25 C 0 1 N N N 14.210 20.557 9.200 4.443 1.903 0.414 C6 YK8 25 YK8 C7 C26 C 0 1 N N N 14.966 21.379 8.184 3.087 2.235 -0.138 C7 YK8 26 YK8 C8 C27 C 0 1 N N S 14.170 22.592 7.737 2.171 1.015 0.007 C8 YK8 27 YK8 C14 C28 C 0 1 N N S 14.756 23.142 6.444 0.854 1.282 -0.700 C14 YK8 28 YK8 O1 O1 O 0 1 N N N 10.410 18.563 11.225 8.395 -0.651 0.587 O1 YK8 29 YK8 O2 O2 O 0 1 N N N 15.386 27.123 4.920 -2.288 0.034 1.288 O2 YK8 30 YK8 H1 H1 H 0 1 N N N 11.311 18.495 9.342 7.253 0.235 -0.889 H1 YK8 31 YK8 H2 H2 H 0 1 N N N 16.868 22.634 6.344 0.298 3.369 -0.468 H2 YK8 32 YK8 H3 H3 H 0 1 N N N 16.495 24.059 7.373 0.024 2.364 0.991 H3 YK8 33 YK8 H4 H4 H 0 1 N N N 16.939 23.938 4.442 -2.177 2.260 0.156 H4 YK8 34 YK8 H5 H5 H 0 1 N N N 16.854 25.378 5.512 -1.657 2.601 -1.519 H5 YK8 35 YK8 H6 H6 H 0 1 N N N 14.716 23.979 3.954 -1.575 0.347 -1.983 H6 YK8 36 YK8 H7 H7 H 0 1 N N N 15.702 25.067 2.380 -3.919 1.426 -0.295 H7 YK8 37 YK8 H8 H8 H 0 1 N N N 16.786 26.286 3.132 -4.052 0.184 -1.563 H8 YK8 38 YK8 H9 H9 H 0 1 N N N 14.449 27.639 2.139 -4.931 -1.425 0.106 H9 YK8 39 YK8 H10 H10 H 0 1 N N N 15.076 26.564 0.844 -4.799 -0.183 1.374 H10 YK8 40 YK8 H11 H11 H 0 1 N N N 16.678 28.652 2.398 -6.377 1.263 0.122 H11 YK8 41 YK8 H12 H12 H 0 1 N N N 16.090 28.802 0.707 -6.510 0.021 -1.145 H12 YK8 42 YK8 H13 H13 H 0 1 N N N 17.416 26.583 0.302 -7.389 -1.588 0.524 H13 YK8 43 YK8 H14 H14 H 0 1 N N N 18.253 26.996 1.836 -7.257 -0.345 1.791 H14 YK8 44 YK8 H15 H15 H 0 1 N N N 18.754 29.259 0.870 -8.806 1.113 0.456 H15 YK8 45 YK8 H16 H16 H 0 1 N N N 12.798 26.545 4.536 -1.481 -2.084 -0.113 H16 YK8 46 YK8 H17 H17 H 0 1 N N N 13.479 27.518 3.189 -3.232 -2.201 0.184 H17 YK8 47 YK8 H18 H18 H 0 1 N N N 13.050 25.793 2.924 -2.628 -1.866 -1.456 H18 YK8 48 YK8 H19 H19 H 0 1 N N N 9.862 21.008 10.314 6.985 -2.253 -0.958 H19 YK8 49 YK8 H20 H20 H 0 1 N N N 9.181 19.771 9.205 6.181 -2.185 0.629 H20 YK8 50 YK8 H21 H21 H 0 1 N N N 13.347 25.128 7.834 -0.769 -1.167 1.143 H21 YK8 51 YK8 H22 H22 H 0 1 N N N 15.021 25.614 7.403 0.936 -0.675 1.292 H22 YK8 52 YK8 H23 H23 H 0 1 N N N 13.622 26.389 6.584 -0.361 0.508 1.585 H23 YK8 53 YK8 H24 H24 H 0 1 N N N 12.044 24.761 5.217 -0.079 -1.973 -1.263 H24 YK8 54 YK8 H25 H25 H 0 1 N N N 12.667 23.117 4.849 0.671 -0.773 -2.352 H25 YK8 55 YK8 H26 H26 H 0 1 N N N 11.867 24.182 7.605 1.806 -1.763 0.308 H26 YK8 56 YK8 H27 H27 H 0 1 N N N 10.931 23.025 6.600 2.414 -2.186 -1.304 H27 YK8 57 YK8 H28 H28 H 0 1 N N N 12.717 21.387 6.750 3.054 0.111 -1.725 H28 YK8 58 YK8 H29 H29 H 0 1 N N N 11.213 22.486 10.579 3.367 -2.318 0.851 H29 YK8 59 YK8 H30 H30 H 0 1 N N N 12.641 23.376 9.953 4.798 -1.665 1.684 H30 YK8 60 YK8 H31 H31 H 0 1 N N N 11.042 23.571 9.158 3.216 -0.873 1.881 H31 YK8 61 YK8 H32 H32 H 0 1 N N N 20.421 27.430 0.862 -10.067 0.069 -1.406 H32 YK8 62 YK8 H33 H33 H 0 1 N N N 19.823 26.903 -0.748 -8.324 0.120 -1.765 H33 YK8 63 YK8 H34 H34 H 0 1 N N N 20.597 28.513 -0.560 -9.082 -1.405 -1.247 H34 YK8 64 YK8 H35 H35 H 0 1 N N N 16.943 29.297 -0.817 -9.665 -0.339 2.272 H35 YK8 65 YK8 H36 H36 H 0 1 N N N 18.554 29.610 -1.546 -10.850 -0.199 0.951 H36 YK8 66 YK8 H37 H37 H 0 1 N N N 17.780 28.000 -1.734 -9.865 -1.673 1.110 H37 YK8 67 YK8 H38 H38 H 0 1 N N N 10.030 21.717 7.953 5.234 -0.728 -1.880 H38 YK8 68 YK8 H39 H39 H 0 1 N N N 10.974 20.236 7.573 4.541 -2.244 -1.253 H39 YK8 69 YK8 H40 H40 H 0 1 N N N 13.039 19.156 10.944 6.234 -0.062 1.975 H40 YK8 70 YK8 H41 H41 H 0 1 N N N 12.066 20.577 11.455 6.785 1.442 1.193 H41 YK8 71 YK8 H42 H42 H 0 1 N N N 14.749 19.784 9.727 5.057 2.707 0.792 H42 YK8 72 YK8 H43 H43 H 0 1 N N N 15.181 20.751 7.307 2.665 3.075 0.414 H43 YK8 73 YK8 H44 H44 H 0 1 N N N 15.911 21.719 8.633 3.178 2.500 -1.191 H44 YK8 74 YK8 H45 H45 H 0 1 N N N 14.212 23.367 8.517 2.009 0.788 1.061 H45 YK8 75 YK8 H46 H46 H 0 1 N N N 14.631 22.361 5.679 1.025 1.455 -1.763 H46 YK8 76 YK8 H47 H47 H 0 1 N N N 10.999 17.912 11.589 8.923 0.126 0.815 H47 YK8 77 YK8 H48 H48 H 0 1 N N N 14.858 27.180 5.708 -2.307 0.967 1.543 H48 YK8 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YK8 C28 C26 SING N N 1 YK8 C27 C26 SING N N 2 YK8 C26 C25 SING N N 3 YK8 C25 C24 SING N N 4 YK8 C24 C23 SING N N 5 YK8 C23 C22 SING N N 6 YK8 C22 C20 SING N N 7 YK8 C21 C20 SING N N 8 YK8 C20 C17 SING N N 9 YK8 C20 O2 SING N N 10 YK8 C17 C16 SING N N 11 YK8 C17 C13 SING N N 12 YK8 C16 C15 SING N N 13 YK8 C12 C13 SING N N 14 YK8 C12 C11 SING N N 15 YK8 C13 C14 SING N N 16 YK8 C13 C18 SING N N 17 YK8 C14 C15 SING N N 18 YK8 C14 C8 SING N N 19 YK8 C11 C9 SING N N 20 YK8 C9 C8 SING N N 21 YK8 C9 C10 SING N N 22 YK8 C8 C7 SING N N 23 YK8 C7 C6 SING N N 24 YK8 C1 C10 SING N N 25 YK8 C1 C2 SING N N 26 YK8 C10 C5 SING N N 27 YK8 C10 C19 SING N N 28 YK8 C6 C5 DOUB N N 29 YK8 C5 C4 SING N N 30 YK8 C2 C3 SING N N 31 YK8 C3 C4 SING N N 32 YK8 C3 O1 SING N N 33 YK8 C3 H1 SING N N 34 YK8 C15 H2 SING N N 35 YK8 C15 H3 SING N N 36 YK8 C16 H4 SING N N 37 YK8 C16 H5 SING N N 38 YK8 C17 H6 SING N N 39 YK8 C22 H7 SING N N 40 YK8 C22 H8 SING N N 41 YK8 C23 H9 SING N N 42 YK8 C23 H10 SING N N 43 YK8 C24 H11 SING N N 44 YK8 C24 H12 SING N N 45 YK8 C25 H13 SING N N 46 YK8 C25 H14 SING N N 47 YK8 C26 H15 SING N N 48 YK8 C21 H16 SING N N 49 YK8 C21 H17 SING N N 50 YK8 C21 H18 SING N N 51 YK8 C2 H19 SING N N 52 YK8 C2 H20 SING N N 53 YK8 C18 H21 SING N N 54 YK8 C18 H22 SING N N 55 YK8 C18 H23 SING N N 56 YK8 C12 H24 SING N N 57 YK8 C12 H25 SING N N 58 YK8 C11 H26 SING N N 59 YK8 C11 H27 SING N N 60 YK8 C9 H28 SING N N 61 YK8 C19 H29 SING N N 62 YK8 C19 H30 SING N N 63 YK8 C19 H31 SING N N 64 YK8 C27 H32 SING N N 65 YK8 C27 H33 SING N N 66 YK8 C27 H34 SING N N 67 YK8 C28 H35 SING N N 68 YK8 C28 H36 SING N N 69 YK8 C28 H37 SING N N 70 YK8 C1 H38 SING N N 71 YK8 C1 H39 SING N N 72 YK8 C4 H40 SING N N 73 YK8 C4 H41 SING N N 74 YK8 C6 H42 SING N N 75 YK8 C7 H43 SING N N 76 YK8 C7 H44 SING N N 77 YK8 C8 H45 SING N N 78 YK8 C14 H46 SING N N 79 YK8 O1 H47 SING N N 80 YK8 O2 H48 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YK8 InChI InChI 1.03 "InChI=1S/C28H48O2/c1-19(2)8-6-7-15-28(5,30)25-12-11-23-22-10-9-20-18-21(29)13-16-26(20,3)24(22)14-17-27(23,25)4/h9,19,21-25,29-30H,6-8,10-18H2,1-5H3/t21-,22-,23-,24-,25-,26-,27-,28-/m0/s1" YK8 InChIKey InChI 1.03 SVUJFWOKISPNOQ-VXBMVYAYSA-N YK8 SMILES_CANONICAL CACTVS 3.385 "CC(C)CCCC[C@](C)(O)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C" YK8 SMILES CACTVS 3.385 "CC(C)CCCC[C](C)(O)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C" YK8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CCCC[C@@](C)([C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C)O" YK8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CCCCC(C)(C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C)O" # _pdbx_chem_comp_identifier.comp_id YK8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},8~{S},9~{S},10~{R},13~{S},14~{S},17~{S})-10,13-dimethyl-17-[(2~{S})-7-methyl-2-oxidanyl-octan-2-yl]-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1~{H}-cyclopenta[a]phenanthren-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YK8 "Create component" 2020-11-17 PDBE YK8 "Initial release" 2021-01-13 RCSB ##