data_YKB # _chem_comp.id YKB _chem_comp.name "N-[4-(3H-IMIDAZO[4,5-C]PYRIDIN-2-YL)-9H-FLUOREN-9-YL]-SUCCINAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H19 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-05-26 _chem_comp.pdbx_modified_date 2011-10-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YKB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YKB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YKB C1 C1 C 0 1 Y N N 8.220 35.126 -23.423 0.892 -2.932 -0.737 C1 YKB 1 YKB C2 C2 C 0 1 Y N N 7.012 35.757 -22.860 -0.434 -3.140 -1.071 C2 YKB 2 YKB C3 C3 C 0 1 Y N N 5.864 34.958 -23.132 -1.298 -2.065 -1.184 C3 YKB 3 YKB C4 C4 C 0 1 Y N N 8.258 33.925 -24.209 1.361 -1.654 -0.514 C4 YKB 4 YKB C5 C5 C 0 1 Y N N 6.996 33.226 -24.424 0.494 -0.564 -0.625 C5 YKB 5 YKB C6 C6 C 0 1 Y N N 5.849 33.779 -23.861 -0.839 -0.784 -0.963 C6 YKB 6 YKB C7 C7 C 0 1 N N R 4.647 32.974 -24.127 -1.523 0.561 -1.009 C7 YKB 7 YKB C8 C8 C 0 1 Y N N 6.569 31.970 -25.150 0.725 0.889 -0.445 C8 YKB 8 YKB C9 C9 C 0 1 Y N N 5.202 31.806 -24.992 -0.463 1.579 -0.666 C9 YKB 9 YKB C10 C10 C 0 1 Y N N 4.406 30.767 -25.501 -0.501 2.953 -0.556 C10 YKB 10 YKB C11 C11 C 0 1 Y N N 5.052 29.725 -26.295 0.642 3.661 -0.222 C11 YKB 11 YKB C12 C12 C 0 1 Y N N 6.500 29.916 -26.480 1.830 2.997 0.003 C12 YKB 12 YKB C13 C13 C 0 1 Y N N 7.251 30.976 -25.923 1.886 1.609 -0.106 C13 YKB 13 YKB C14 C14 C 0 1 Y N N 8.752 30.972 -26.189 3.157 0.896 0.136 C14 YKB 14 YKB N15 N15 N 0 1 Y N N 9.675 31.070 -25.280 3.261 -0.320 0.621 N15 YKB 15 YKB N16 N16 N 0 1 Y N N 9.261 30.809 -27.513 4.404 1.401 -0.118 N16 YKB 16 YKB C17 C17 C 0 1 Y N N 10.536 30.803 -27.464 5.316 0.430 0.243 C17 YKB 17 YKB C18 C18 C 0 1 Y N N 10.810 30.953 -26.073 4.558 -0.663 0.713 C18 YKB 18 YKB C19 C19 C 0 1 Y N N 12.209 30.984 -25.603 5.245 -1.804 1.147 C19 YKB 19 YKB C20 C20 C 0 1 Y N N 13.158 30.832 -26.494 6.610 -1.809 1.101 C20 YKB 20 YKB N21 N21 N 0 1 Y N N 12.853 30.703 -27.862 7.290 -0.765 0.658 N21 YKB 21 YKB C22 C22 C 0 1 Y N N 11.609 30.697 -28.374 6.697 0.333 0.229 C22 YKB 22 YKB N23 N23 N 0 1 N N N 3.468 33.442 -24.757 -2.606 0.610 -0.023 N23 YKB 23 YKB C24 C24 C 0 1 N N N 2.252 33.673 -24.111 -3.834 0.159 -0.348 C24 YKB 24 YKB C25 C25 C 0 1 N N N 1.050 34.175 -24.940 -4.948 0.209 0.665 C25 YKB 25 YKB O26 O26 O 0 1 N N N 2.163 33.494 -22.889 -4.042 -0.288 -1.457 O26 YKB 26 YKB C27 C27 C 0 1 N N N -0.140 34.614 -24.148 -6.226 -0.359 0.046 C27 YKB 27 YKB C28 C28 C 0 1 N N N -1.425 34.499 -24.833 -7.340 -0.309 1.060 C28 YKB 28 YKB O29 O29 O 0 1 N N N -1.540 34.723 -26.160 -7.132 0.137 2.168 O29 YKB 29 YKB N30 N30 N 0 1 N N N -2.320 34.043 -24.124 -8.568 -0.760 0.735 N30 YKB 30 YKB H1 H1 H 0 1 N N N 9.164 35.612 -23.226 1.562 -3.774 -0.645 H1 YKB 31 YKB H2 H2 H 0 1 N N N 6.999 36.691 -22.319 -0.796 -4.142 -1.244 H2 YKB 32 YKB H4 H4 H 0 1 N N N 9.184 33.554 -24.624 2.397 -1.497 -0.252 H4 YKB 33 YKB H3 H3 H 0 1 N N N 4.921 35.302 -22.734 -2.333 -2.229 -1.446 H3 YKB 34 YKB H7 H7 H 0 1 N N N 4.228 32.818 -23.122 -1.915 0.748 -2.008 H7 YKB 35 YKB H23 H23 H 0 1 N N N 3.510 33.621 -25.740 -2.439 0.967 0.863 H23 YKB 36 YKB H10 H10 H 0 1 N N N 3.343 30.739 -25.310 -1.427 3.480 -0.731 H10 YKB 37 YKB H11 H11 H 0 1 N N N 4.513 28.886 -26.711 0.603 4.737 -0.139 H11 YKB 38 YKB H12 H12 H 0 1 N N N 7.027 29.193 -27.086 2.718 3.554 0.263 H12 YKB 39 YKB H16 H16 H 0 1 N N N 8.709 30.715 -28.342 4.608 2.276 -0.483 H16 YKB 40 YKB H22 H22 H 0 1 N N N 11.439 30.614 -29.437 7.292 1.160 -0.131 H22 YKB 41 YKB H19 H19 H 0 1 N N N 12.443 31.127 -24.558 4.705 -2.664 1.513 H19 YKB 42 YKB H20 H20 H 0 1 N N N 14.189 30.805 -26.174 7.146 -2.685 1.434 H20 YKB 43 YKB H251 H251 H 0 0 N N N 1.392 35.038 -25.529 -4.672 -0.383 1.538 H251 YKB 44 YKB H252 H252 H 0 0 N N N 0.728 33.348 -25.590 -5.118 1.242 0.967 H252 YKB 45 YKB H271 H271 H 0 0 N N N -0.188 33.987 -23.246 -6.502 0.233 -0.826 H271 YKB 46 YKB H272 H272 H 0 0 N N N 0.005 35.674 -23.891 -6.056 -1.393 -0.255 H272 YKB 47 YKB H301 H301 H 0 0 N N N -3.206 33.811 -24.525 -8.735 -1.117 -0.152 H301 YKB 48 YKB H302 H302 H 0 0 N N N -2.162 33.904 -23.146 -9.285 -0.728 1.387 H302 YKB 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YKB C1 C2 SING Y N 1 YKB C1 C4 DOUB Y N 2 YKB C2 C3 DOUB Y N 3 YKB C3 C6 SING Y N 4 YKB C4 C5 SING Y N 5 YKB C5 C6 DOUB Y N 6 YKB C5 C8 SING Y N 7 YKB C6 C7 SING N N 8 YKB C7 C9 SING N N 9 YKB C7 N23 SING N N 10 YKB C8 C9 SING Y N 11 YKB C8 C13 DOUB Y N 12 YKB C9 C10 DOUB Y N 13 YKB C10 C11 SING Y N 14 YKB C11 C12 DOUB Y N 15 YKB C12 C13 SING Y N 16 YKB C13 C14 SING Y N 17 YKB C14 N15 DOUB Y N 18 YKB C14 N16 SING Y N 19 YKB N15 C18 SING Y N 20 YKB N16 C17 SING Y N 21 YKB C17 C18 SING Y N 22 YKB C17 C22 DOUB Y N 23 YKB C18 C19 DOUB Y N 24 YKB C19 C20 SING Y N 25 YKB C20 N21 DOUB Y N 26 YKB N21 C22 SING Y N 27 YKB N23 C24 SING N N 28 YKB C24 C25 SING N N 29 YKB C24 O26 DOUB N N 30 YKB C25 C27 SING N N 31 YKB C27 C28 SING N N 32 YKB C28 O29 DOUB N N 33 YKB C28 N30 SING N N 34 YKB C1 H1 SING N N 35 YKB C2 H2 SING N N 36 YKB C4 H4 SING N N 37 YKB C3 H3 SING N N 38 YKB C7 H7 SING N N 39 YKB N23 H23 SING N N 40 YKB C10 H10 SING N N 41 YKB C11 H11 SING N N 42 YKB C12 H12 SING N N 43 YKB N16 H16 SING N N 44 YKB C22 H22 SING N N 45 YKB C19 H19 SING N N 46 YKB C20 H20 SING N N 47 YKB C25 H251 SING N N 48 YKB C25 H252 SING N N 49 YKB C27 H271 SING N N 50 YKB C27 H272 SING N N 51 YKB N30 H301 SING N N 52 YKB N30 H302 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YKB SMILES ACDLabs 12.01 "O=C(N)CCC(=O)NC5c1ccccc1c4c5cccc4c3nc2ccncc2n3" YKB SMILES_CANONICAL CACTVS 3.370 "NC(=O)CCC(=O)N[C@@H]1c2ccccc2c3c1cccc3c4[nH]c5cnccc5n4" YKB SMILES CACTVS 3.370 "NC(=O)CCC(=O)N[CH]1c2ccccc2c3c1cccc3c4[nH]c5cnccc5n4" YKB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc2c(c1)-c3c(cccc3[C@@H]2NC(=O)CCC(=O)N)c4[nH]c5cnccc5n4" YKB SMILES "OpenEye OEToolkits" 1.7.2 "c1ccc2c(c1)-c3c(cccc3C2NC(=O)CCC(=O)N)c4[nH]c5cnccc5n4" YKB InChI InChI 1.03 "InChI=1S/C23H19N5O2/c24-19(29)8-9-20(30)28-22-14-5-2-1-4-13(14)21-15(22)6-3-7-16(21)23-26-17-10-11-25-12-18(17)27-23/h1-7,10-12,22H,8-9H2,(H2,24,29)(H,26,27)(H,28,30)/t22-/m1/s1" YKB InChIKey InChI 1.03 ROTVJYWUPWSGIX-JOCHJYFZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YKB "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(9R)-4-(3H-imidazo[4,5-c]pyridin-2-yl)-9H-fluoren-9-yl]butanediamide" YKB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N'-[(9R)-4-(3H-imidazo[4,5-c]pyridin-2-yl)-9H-fluoren-9-yl]butanediamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YKB "Create component" 2011-05-26 EBI YKB "Modify aromatic_flag" 2011-06-04 RCSB YKB "Modify descriptor" 2011-06-04 RCSB #