data_YKP # _chem_comp.id YKP _chem_comp.name "(1S,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)ethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H37 F2 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-11 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.606 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YKP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YKP C10 C1 C 0 1 N N N -24.123 -6.117 4.892 -0.361 -0.734 -2.867 C10 YKP 1 YKP C13 C2 C 0 1 N N S -17.565 -5.712 4.941 3.996 0.129 1.324 C13 YKP 2 YKP C01 C3 C 0 1 N N N -19.077 -3.010 -0.272 -4.265 -2.816 0.952 C01 YKP 3 YKP C02 C4 C 0 1 N N S -20.598 -2.906 -0.079 -4.224 -1.384 0.414 C02 YKP 4 YKP C04 C5 C 0 1 N N N -21.117 -4.293 1.855 -1.923 -0.770 0.268 C04 YKP 5 YKP C06 C6 C 0 1 N N S -21.307 -5.901 3.719 0.435 -0.234 -0.035 C06 YKP 6 YKP C07 C7 C 0 1 N N N -21.982 -7.260 4.038 0.451 0.851 -1.114 C07 YKP 7 YKP C08 C8 C 0 1 N N N -23.526 -7.228 3.995 -0.659 0.574 -2.131 C08 YKP 8 YKP C09 C9 C 0 1 N N N -24.146 -8.599 4.365 -0.724 1.723 -3.139 C09 YKP 9 YKP C11 C10 C 0 1 N N N -19.775 -6.104 3.776 1.602 -0.032 0.897 C11 YKP 10 YKP C14 C11 C 0 1 N N N -16.897 -4.300 5.007 5.238 -0.544 0.738 C14 YKP 11 YKP C15 C12 C 0 1 N N S -17.049 -3.536 3.682 5.049 -2.062 0.748 C15 YKP 12 YKP C16 C13 C 0 1 N N N -16.512 -2.122 3.777 3.943 -2.464 -0.203 C16 YKP 13 YKP C18 C14 C 0 1 N N N -15.415 -3.060 1.863 5.934 -2.940 -1.301 C18 YKP 14 YKP C19 C15 C 0 1 N N N -16.174 -4.189 2.590 6.306 -2.768 0.189 C19 YKP 15 YKP C21 C16 C 0 1 N N S -17.269 -6.561 6.227 4.259 1.627 1.494 C21 YKP 16 YKP C25 C17 C 0 1 N N N -21.359 -2.650 -1.436 -5.503 -0.650 0.822 C25 YKP 17 YKP C26 C18 C 0 1 N N N -20.957 -1.283 -2.064 -6.717 -1.378 0.242 C26 YKP 18 YKP C27 C19 C 0 1 N N N -21.778 -0.939 -3.319 -7.995 -0.644 0.650 C27 YKP 19 YKP C28 C20 C 0 1 N N N -23.302 -0.982 -3.034 -7.955 0.788 0.112 C28 YKP 20 YKP C31 C21 C 0 1 N N N -23.733 -2.348 -2.418 -6.741 1.516 0.692 C31 YKP 21 YKP C32 C22 C 0 1 N N N -22.898 -2.698 -1.173 -5.462 0.782 0.284 C32 YKP 22 YKP F29 F1 F 0 1 N N N -23.673 0.047 -2.203 -7.858 0.759 -1.284 F29 YKP 23 YKP F30 F2 F 0 1 N N N -24.061 -0.658 -4.136 -9.124 1.460 0.484 F30 YKP 24 YKP N05 N1 N 0 1 N N N -21.750 -5.423 2.408 -0.816 -0.150 0.723 N05 YKP 25 YKP N12 N2 N 0 1 N N N -19.011 -5.551 4.822 2.861 -0.067 0.418 N12 YKP 26 YKP N17 N3 N 0 1 N N N -15.581 -1.868 2.736 4.467 -2.957 -1.339 N17 YKP 27 YKP O03 O1 O 0 1 N N N -21.007 -4.169 0.460 -3.072 -0.693 0.964 O03 YKP 28 YKP O20 O2 O 0 1 N N N -16.831 -1.297 4.623 2.757 -2.358 0.026 O20 YKP 29 YKP O22 O3 O 0 1 N N N -15.849 -6.748 6.333 5.436 1.817 2.282 O22 YKP 30 YKP O23 O4 O 0 1 N N N -19.204 -6.765 2.914 1.408 0.163 2.078 O23 YKP 31 YKP O24 O5 O 0 1 N N N -20.648 -3.419 2.582 -1.883 -1.397 -0.772 O24 YKP 32 YKP H1 H1 H 0 1 N N N -25.221 -6.140 4.823 -0.314 -1.553 -2.149 H1 YKP 33 YKP H2 H2 H 0 1 N N N -23.817 -6.285 5.935 -1.151 -0.931 -3.592 H2 YKP 34 YKP H3 H3 H 0 1 N N N -23.755 -5.137 4.555 0.595 -0.650 -3.385 H3 YKP 35 YKP H4 H4 H 0 1 N N N -17.171 -6.249 4.066 3.766 -0.312 2.294 H4 YKP 36 YKP H5 H5 H 0 1 N N N -18.595 -3.188 0.701 -5.129 -3.335 0.539 H5 YKP 37 YKP H6 H6 H 0 1 N N N -18.850 -3.844 -0.952 -3.354 -3.339 0.661 H6 YKP 38 YKP H7 H7 H 0 1 N N N -18.697 -2.072 -0.703 -4.340 -2.794 2.039 H7 YKP 39 YKP H8 H8 H 0 1 N N N -20.825 -2.087 0.619 -4.149 -1.407 -0.673 H8 YKP 40 YKP H9 H9 H 0 1 N N N -21.595 -5.176 4.495 0.511 -1.215 -0.504 H9 YKP 41 YKP H10 H10 H 0 1 N N N -21.632 -8.000 3.303 0.286 1.824 -0.653 H10 YKP 42 YKP H11 H11 H 0 1 N N N -21.672 -7.571 5.047 1.416 0.846 -1.620 H11 YKP 43 YKP H12 H12 H 0 1 N N N -23.820 -7.005 2.959 -1.614 0.490 -1.613 H12 YKP 44 YKP H13 H13 H 0 1 N N N -25.243 -8.530 4.321 0.231 1.807 -3.657 H13 YKP 45 YKP H14 H14 H 0 1 N N N -23.798 -9.362 3.653 -1.514 1.526 -3.864 H14 YKP 46 YKP H15 H15 H 0 1 N N N -23.837 -8.878 5.383 -0.936 2.655 -2.615 H15 YKP 47 YKP H16 H16 H 0 1 N N N -15.826 -4.422 5.227 5.387 -0.203 -0.286 H16 YKP 48 YKP H17 H17 H 0 1 N N N -17.372 -3.718 5.810 6.110 -0.283 1.338 H17 YKP 49 YKP H18 H18 H 0 1 N N N -18.103 -3.528 3.367 4.830 -2.411 1.757 H18 YKP 50 YKP H19 H19 H 0 1 N N N -14.351 -3.316 1.755 6.317 -2.102 -1.883 H19 YKP 51 YKP H20 H20 H 0 1 N N N -15.851 -2.877 0.870 6.332 -3.879 -1.683 H20 YKP 52 YKP H21 H21 H 0 1 N N N -16.809 -4.734 1.876 7.189 -2.139 0.301 H21 YKP 53 YKP H22 H22 H 0 1 N N N -15.458 -4.886 3.050 6.455 -3.736 0.668 H22 YKP 54 YKP H23 H23 H 0 1 N N N -17.728 -7.547 6.059 3.408 2.091 1.993 H23 YKP 55 YKP S1 S1 S 0 1 N Y N -17.633 -6.047 7.092 4.493 2.388 -0.136 S1 YKP 56 YKP H25 H25 H 0 1 N N N -21.097 -3.453 -2.140 -5.578 -0.627 1.909 H25 YKP 57 YKP H26 H26 H 0 1 N N N -19.893 -1.322 -2.340 -6.642 -1.401 -0.846 H26 YKP 58 YKP H27 H27 H 0 1 N N N -21.112 -0.493 -1.315 -6.746 -2.398 0.625 H27 YKP 59 YKP H28 H28 H 0 1 N N N -21.542 -1.666 -4.110 -8.860 -1.163 0.236 H28 YKP 60 YKP H29 H29 H 0 1 N N N -21.506 0.072 -3.657 -8.070 -0.621 1.737 H29 YKP 61 YKP H30 H30 H 0 1 N N N -24.794 -2.292 -2.132 -6.712 2.536 0.308 H30 YKP 62 YKP H31 H31 H 0 1 N N N -23.598 -3.138 -3.172 -6.816 1.539 1.779 H31 YKP 63 YKP H32 H32 H 0 1 N N N -23.140 -1.980 -0.376 -4.597 1.301 0.697 H32 YKP 64 YKP H33 H33 H 0 1 N N N -23.166 -3.713 -0.845 -5.387 0.760 -0.803 H33 YKP 65 YKP H34 H34 H 0 1 N N N -22.486 -5.889 1.916 -0.847 0.351 1.553 H34 YKP 66 YKP H35 H35 H 0 1 N N N -19.486 -5.018 5.522 3.016 -0.223 -0.527 H35 YKP 67 YKP H36 H36 H 0 1 N N N -15.100 -1.001 2.607 3.943 -3.281 -2.087 H36 YKP 68 YKP H37 H37 H 0 1 N N N -15.654 -7.261 7.108 5.381 1.434 3.168 H37 YKP 69 YKP O1 O6 O 0 1 N Y N ? ? ? 4.449 3.805 -0.035 O1 YKP 70 YKP O2 O7 O 0 1 N Y N ? ? ? 5.537 1.736 -0.846 O2 YKP 71 YKP O3 O8 O 0 1 N Y N ? ? ? 3.232 2.028 -0.908 O3 YKP 72 YKP H24 H24 H 0 1 N Y N ? ? ? 3.212 2.372 -1.811 H24 YKP 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YKP F30 C28 SING N N 1 YKP C27 C28 SING N N 2 YKP C27 C26 SING N N 3 YKP C28 C31 SING N N 4 YKP C28 F29 SING N N 5 YKP C31 C32 SING N N 6 YKP C26 C25 SING N N 7 YKP C25 C32 SING N N 8 YKP C25 C02 SING N N 9 YKP C01 C02 SING N N 10 YKP C02 O03 SING N N 11 YKP O03 C04 SING N N 12 YKP C04 N05 SING N N 13 YKP C04 O24 DOUB N N 14 YKP C18 C19 SING N N 15 YKP C18 N17 SING N N 16 YKP N05 C06 SING N N 17 YKP C19 C15 SING N N 18 YKP N17 C16 SING N N 19 YKP O23 C11 DOUB N N 20 YKP C15 C16 SING N N 21 YKP C15 C14 SING N N 22 YKP C06 C11 SING N N 23 YKP C06 C07 SING N N 24 YKP C11 N12 SING N N 25 YKP C16 O20 DOUB N N 26 YKP C08 C07 SING N N 27 YKP C08 C09 SING N N 28 YKP C08 C10 SING N N 29 YKP N12 C13 SING N N 30 YKP C13 C14 SING N N 31 YKP C13 C21 SING N N 32 YKP C21 O22 SING N N 33 YKP C10 H1 SING N N 34 YKP C10 H2 SING N N 35 YKP C10 H3 SING N N 36 YKP C13 H4 SING N N 37 YKP C01 H5 SING N N 38 YKP C01 H6 SING N N 39 YKP C01 H7 SING N N 40 YKP C02 H8 SING N N 41 YKP C06 H9 SING N N 42 YKP C07 H10 SING N N 43 YKP C07 H11 SING N N 44 YKP C08 H12 SING N N 45 YKP C09 H13 SING N N 46 YKP C09 H14 SING N N 47 YKP C09 H15 SING N N 48 YKP C14 H16 SING N N 49 YKP C14 H17 SING N N 50 YKP C15 H18 SING N N 51 YKP C18 H19 SING N N 52 YKP C18 H20 SING N N 53 YKP C19 H21 SING N N 54 YKP C19 H22 SING N N 55 YKP C21 H23 SING N N 56 YKP C21 S1 SING N N 57 YKP C25 H25 SING N N 58 YKP C26 H26 SING N N 59 YKP C26 H27 SING N N 60 YKP C27 H28 SING N N 61 YKP C27 H29 SING N N 62 YKP C31 H30 SING N N 63 YKP C31 H31 SING N N 64 YKP C32 H32 SING N N 65 YKP C32 H33 SING N N 66 YKP N05 H34 SING N N 67 YKP N12 H35 SING N N 68 YKP N17 H36 SING N N 69 YKP O22 H37 SING N N 70 YKP S1 O1 DOUB N N 71 YKP S1 O2 DOUB N N 72 YKP S1 O3 SING N N 73 YKP O3 H24 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YKP SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OC(C)C1CCC(F)(F)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YKP InChI InChI 1.03 "InChI=1S/C22H37F2N3O8S/c1-12(2)10-16(27-21(31)35-13(3)14-4-7-22(23,24)8-5-14)19(29)26-17(20(30)36(32,33)34)11-15-6-9-25-18(15)28/h12-17,20,30H,4-11H2,1-3H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t13-,15-,16-,17-,20-/m0/s1" YKP InChIKey InChI 1.03 YRNJEPAFOLVHMN-ZZKADIETSA-N YKP SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)O[C@@H](C)C1CCC(F)(F)CC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O" YKP SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)O[CH](C)C1CCC(F)(F)CC1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YKP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C1CCC(CC1)(F)F)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O" YKP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC(C)C2CCC(CC2)(F)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YKP "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[(1S)-1-(4,4-difluorocyclohexyl)ethoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YKP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(1~{S})-1-[4,4-bis(fluoranyl)cyclohexyl]ethoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YKP "Create component" 2021-03-11 RCSB YKP "Initial release" 2021-03-24 RCSB ##