data_YKQ
#
_chem_comp.id YKQ
_chem_comp.name Abivertinib
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H26 F N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "~{N}-[3-[[2-[[3-fluoranyl-4-(4-methylpiperazin-1-yl)phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]oxy]phenyl]prop-2-enamide"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-12-05
_chem_comp.pdbx_modified_date 2024-11-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 487.529
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YKQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8R7E
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YKQ C1 C1 C 0 1 N N N N N N 44.380 39.031 80.077 10.063 0.457 0.831 C1 YKQ 1
YKQ C3 C2 C 0 1 N N N N N N 43.295 41.206 80.075 7.963 1.564 1.312 C3 YKQ 2
YKQ C4 C3 C 0 1 N N N N N N 42.325 42.117 80.847 6.444 1.377 1.330 C4 YKQ 3
YKQ C6 C4 C 0 1 N N N N N N 41.133 40.114 81.609 6.609 -0.141 -0.549 C6 YKQ 4
YKQ C7 C5 C 0 1 N N N N N N 42.108 39.223 80.835 8.128 0.047 -0.567 C7 YKQ 5
YKQ C8 C6 C 0 1 Y N N N N N 39.920 42.126 81.570 4.577 0.972 -0.067 C8 YKQ 6
YKQ C11 C7 C 0 1 Y N N N N N 37.611 43.302 82.636 1.815 0.767 -0.129 C11 YKQ 7
YKQ C15 C8 C 0 1 Y N N N N N 34.018 46.449 82.683 0.038 -2.871 0.122 C15 YKQ 8
YKQ C18 C9 C 0 1 Y N N N N N 32.538 48.030 82.124 -0.474 -5.052 0.258 C18 YKQ 9
YKQ C19 C10 C 0 1 Y N N N N N 33.089 47.641 80.964 -1.641 -4.432 0.019 C19 YKQ 10
YKQ C21 C11 C 0 1 Y N N N N N 34.968 45.805 80.527 -2.111 -1.847 -0.301 C21 YKQ 11
YKQ C23 C12 C 0 1 Y N N N N N 35.826 45.005 78.460 -4.152 -0.768 -0.586 C23 YKQ 12
YKQ C24 C13 C 0 1 Y N N N N N 35.225 44.007 77.701 -3.524 0.391 -1.022 C24 YKQ 13
YKQ C27 C14 C 0 1 Y N N N N N 37.989 44.170 77.766 -6.210 0.444 -0.347 C27 YKQ 14
YKQ C31 C15 C 0 1 N N N N N N 41.593 45.243 77.508 -9.499 1.567 1.006 C31 YKQ 15
YKQ C32 C16 C 0 1 N N N N N N 42.403 46.266 77.214 -10.014 2.641 1.598 C32 YKQ 16
YKQ C33 C17 C 0 1 Y N N N N N 37.214 45.077 78.484 -5.497 -0.742 -0.251 C33 YKQ 17
YKQ C35 C18 C 0 1 Y N N N N N 38.843 43.505 83.235 2.457 1.720 -0.909 C35 YKQ 18
YKQ C36 C19 C 0 1 Y N N N N N 39.989 42.925 82.722 3.835 1.827 -0.874 C36 YKQ 19
YKQ N2 N1 N 0 1 N N N N N N 43.411 39.899 80.757 8.599 0.344 0.793 N2 YKQ 20
YKQ N5 N2 N 0 1 N N N N N N 41.008 41.445 80.974 5.974 1.079 -0.030 N5 YKQ 21
YKQ C9 C20 C 0 1 Y N N N N N 38.681 41.921 80.985 3.934 0.016 0.708 C9 YKQ 22
YKQ C10 C21 C 0 1 Y N N N N N 37.539 42.499 81.508 2.557 -0.086 0.676 C10 YKQ 23
YKQ N12 N3 N 0 1 N N N N N N 36.468 43.899 83.198 0.419 0.660 -0.164 N12 YKQ 24
YKQ C13 C22 C 0 1 Y N N N N N 35.659 44.810 82.532 -0.181 -0.589 -0.130 C13 YKQ 25
YKQ N14 N4 N 0 1 Y N N N N N 34.827 45.549 83.257 0.576 -1.653 0.082 N14 YKQ 26
YKQ N16 N5 N 0 1 Y N N N N N 33.081 47.323 83.164 0.539 -4.128 0.315 N16 YKQ 27
YKQ C20 C23 C 0 1 Y N N N N N 34.071 46.606 81.273 -1.349 -3.002 -0.073 C20 YKQ 28
YKQ O22 O1 O 0 1 N N N N N N 35.070 45.902 79.168 -3.450 -1.928 -0.493 O22 YKQ 29
YKQ C25 C24 C 0 1 Y N N N N N 35.992 43.100 76.980 -4.238 1.570 -1.123 C25 YKQ 30
YKQ C26 C25 C 0 1 Y N N N N N 37.372 43.180 77.008 -5.578 1.599 -0.790 C26 YKQ 31
YKQ N28 N6 N 0 1 N N N N N N 39.388 44.247 77.813 -7.567 0.474 -0.010 N28 YKQ 32
YKQ C29 C26 C 0 1 N N N N N N 40.110 45.319 77.387 -8.089 1.562 0.589 C29 YKQ 33
YKQ O30 O2 O 0 1 N N N N N N 39.558 46.318 76.930 -7.393 2.541 0.785 O30 YKQ 34
YKQ N34 N7 N 0 1 Y N N N N N 35.724 44.939 81.208 -1.492 -0.674 -0.318 N34 YKQ 35
YKQ F37 F1 F 0 1 N N N N N N 41.148 43.182 83.365 4.460 2.761 -1.623 F37 YKQ 36
YKQ H1 H1 H 0 1 N N N N N N 44.445 38.068 80.605 10.389 0.610 1.860 H1 YKQ 37
YKQ H2 H2 H 0 1 N N N N N N 44.054 38.859 79.041 10.508 -0.459 0.442 H2 YKQ 38
YKQ H3 H3 H 0 1 N N N N N N 45.368 39.515 80.075 10.378 1.302 0.220 H3 YKQ 39
YKQ H4 H4 H 0 1 N N N N N N 44.285 41.683 80.030 8.218 2.408 0.670 H4 YKQ 40
YKQ H5 H5 H 0 1 N N N N N N 42.916 41.052 79.054 8.318 1.756 2.324 H5 YKQ 41
YKQ H6 H6 H 0 1 N N N N N N 42.731 42.319 81.849 6.188 0.550 1.992 H6 YKQ 42
YKQ H7 H7 H 0 1 N N N N N N 42.202 43.065 80.303 5.970 2.290 1.687 H7 YKQ 43
YKQ H8 H8 H 0 1 N N N N N N 40.145 39.632 81.630 6.255 -0.333 -1.562 H8 YKQ 44
YKQ H9 H9 H 0 1 N N N N N N 41.501 40.240 82.638 6.354 -0.985 0.092 H9 YKQ 45
YKQ H10 H10 H 0 1 N N N N N N 41.722 39.047 79.820 8.603 -0.867 -0.924 H10 YKQ 46
YKQ H11 H11 H 0 1 N N N N N N 42.222 38.261 81.356 8.385 0.873 -1.230 H11 YKQ 47
YKQ H12 H12 H 0 1 N N N N N N 31.777 48.790 82.223 -0.351 -6.118 0.379 H12 YKQ 48
YKQ H13 H13 H 0 1 N N N N N N 32.850 48.023 79.983 -2.609 -4.900 -0.086 H13 YKQ 49
YKQ H14 H14 H 0 1 N N N N N N 34.148 43.936 77.671 -2.476 0.371 -1.283 H14 YKQ 50
YKQ H15 H15 H 0 1 N N N N N N 42.035 44.318 77.849 -10.117 0.698 0.832 H15 YKQ 51
YKQ H16 H16 H 0 1 N N N N N N 43.472 46.156 77.320 -11.050 2.645 1.905 H16 YKQ 52
YKQ H17 H17 H 0 1 N N N N N N 41.988 47.202 76.871 -9.396 3.510 1.772 H17 YKQ 53
YKQ H18 H18 H 0 1 N N N N N N 37.698 45.847 79.067 -5.988 -1.644 0.085 H18 YKQ 54
YKQ H19 H19 H 0 1 N N N N N N 38.910 44.126 84.116 1.880 2.378 -1.542 H19 YKQ 55
YKQ H21 H21 H 0 1 N N N N N N 38.606 41.299 80.105 4.511 -0.648 1.334 H21 YKQ 56
YKQ H22 H22 H 0 1 N N N N N N 36.584 42.324 81.035 2.057 -0.830 1.279 H22 YKQ 57
YKQ H23 H23 H 0 1 N N N N N N 36.223 43.652 84.135 -0.128 1.459 -0.212 H23 YKQ 58
YKQ H24 H24 H 0 1 N N N N N N 32.831 47.429 84.126 1.474 -4.337 0.470 H24 YKQ 59
YKQ H25 H25 H 0 1 N N N N N N 35.509 42.330 76.396 -3.748 2.469 -1.467 H25 YKQ 60
YKQ H26 H26 H 0 1 N N N N N N 37.968 42.478 76.444 -6.134 2.522 -0.869 H26 YKQ 61
YKQ H27 H27 H 0 1 N N N N N N 39.887 43.464 78.183 -8.133 -0.289 -0.208 H27 YKQ 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YKQ O30 C29 DOUB N N 1
YKQ C25 C26 DOUB Y N 2
YKQ C25 C24 SING Y N 3
YKQ C26 C27 SING Y N 4
YKQ C32 C31 DOUB N N 5
YKQ C29 C31 SING N N 6
YKQ C29 N28 SING N N 7
YKQ C24 C23 DOUB Y N 8
YKQ C27 N28 SING N N 9
YKQ C27 C33 DOUB Y N 10
YKQ C23 C33 SING Y N 11
YKQ C23 O22 SING N N 12
YKQ O22 C21 SING N N 13
YKQ C3 N2 SING N N 14
YKQ C3 C4 SING N N 15
YKQ C1 N2 SING N N 16
YKQ C21 N34 DOUB Y N 17
YKQ C21 C20 SING Y N 18
YKQ N2 C7 SING N N 19
YKQ C7 C6 SING N N 20
YKQ C4 N5 SING N N 21
YKQ C19 C20 SING Y N 22
YKQ C19 C18 DOUB Y N 23
YKQ N5 C8 SING N N 24
YKQ N5 C6 SING N N 25
YKQ C9 C10 DOUB Y N 26
YKQ C9 C8 SING Y N 27
YKQ N34 C13 SING Y N 28
YKQ C20 C15 DOUB Y N 29
YKQ C10 C11 SING Y N 30
YKQ C8 C36 DOUB Y N 31
YKQ C18 N16 SING Y N 32
YKQ C13 N12 SING N N 33
YKQ C13 N14 DOUB Y N 34
YKQ C11 N12 SING N N 35
YKQ C11 C35 DOUB Y N 36
YKQ C15 N16 SING Y N 37
YKQ C15 N14 SING Y N 38
YKQ C36 C35 SING Y N 39
YKQ C36 F37 SING N N 40
YKQ C1 H1 SING N N 41
YKQ C1 H2 SING N N 42
YKQ C1 H3 SING N N 43
YKQ C3 H4 SING N N 44
YKQ C3 H5 SING N N 45
YKQ C4 H6 SING N N 46
YKQ C4 H7 SING N N 47
YKQ C6 H8 SING N N 48
YKQ C6 H9 SING N N 49
YKQ C7 H10 SING N N 50
YKQ C7 H11 SING N N 51
YKQ C18 H12 SING N N 52
YKQ C19 H13 SING N N 53
YKQ C24 H14 SING N N 54
YKQ C31 H15 SING N N 55
YKQ C32 H16 SING N N 56
YKQ C32 H17 SING N N 57
YKQ C33 H18 SING N N 58
YKQ C35 H19 SING N N 59
YKQ C9 H21 SING N N 60
YKQ C10 H22 SING N N 61
YKQ N12 H23 SING N N 62
YKQ N16 H24 SING N N 63
YKQ C25 H25 SING N N 64
YKQ C26 H26 SING N N 65
YKQ N28 H27 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YKQ InChI InChI 1.06 "InChI=1S/C26H26FN7O2/c1-3-23(35)29-17-5-4-6-19(15-17)36-25-20-9-10-28-24(20)31-26(32-25)30-18-7-8-22(21(27)16-18)34-13-11-33(2)12-14-34/h3-10,15-16H,1,11-14H2,2H3,(H,29,35)(H2,28,30,31,32)"
YKQ InChIKey InChI 1.06 UOFYSRZSLXWIQB-UHFFFAOYSA-N
YKQ SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc(Nc3nc4[nH]ccc4c(Oc5cccc(NC(=O)C=C)c5)n3)cc2F"
YKQ SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc(Nc3nc4[nH]ccc4c(Oc5cccc(NC(=O)C=C)c5)n3)cc2F"
YKQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2F)Nc3nc4c(cc[nH]4)c(n3)Oc5cccc(c5)NC(=O)C=C"
YKQ SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2F)Nc3nc4c(cc[nH]4)c(n3)Oc5cccc(c5)NC(=O)C=C"
#
_pdbx_chem_comp_identifier.comp_id YKQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "~{N}-[3-[[2-[[3-fluoranyl-4-(4-methylpiperazin-1-yl)phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]oxy]phenyl]prop-2-enamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YKQ "Create component" 2023-12-05 PDBE
YKQ "Initial release" 2024-10-30 RCSB
YKQ "Modify name" 2024-11-11 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id YKQ
_pdbx_chem_comp_synonyms.name "~{N}-[3-[[2-[[3-fluoranyl-4-(4-methylpiperazin-1-yl)phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]oxy]phenyl]prop-2-enamide"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#