data_YKS # _chem_comp.id YKS _chem_comp.name "(1R,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H41 F2 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 617.702 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YKS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M01 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YKS C11 C1 C 0 1 N N S N N N 8.514 19.721 28.029 3.645 0.588 -0.026 C11 YKS 1 YKS C12 C2 C 0 1 N N N N N N 7.520 19.745 26.808 4.598 0.365 1.149 C12 YKS 2 YKS C13 C3 C 0 1 N N S N N N 7.195 21.155 26.267 3.856 0.620 2.463 C13 YKS 3 YKS C14 C4 C 0 1 N N N N N N 6.313 21.088 24.981 4.778 0.402 3.642 C14 YKS 4 YKS C17 C5 C 0 1 N N N N N N 6.266 21.869 27.274 3.446 2.107 2.573 C17 YKS 5 YKS C19 C6 C 0 1 N N R N N N 8.685 18.270 28.562 4.423 0.493 -1.340 C19 YKS 6 YKS C23 C7 C 0 1 N N S N N N 9.291 25.974 25.571 -3.775 1.319 0.208 C23 YKS 7 YKS C02 C8 C 0 1 N N N N N N 10.611 24.075 26.366 -1.784 0.068 -0.198 C02 YKS 8 YKS C04 C9 C 0 1 N N S N N N 11.631 22.127 27.525 0.284 -1.197 -0.443 C04 YKS 9 YKS C05 C10 C 0 1 N N N N N N 12.703 21.896 28.580 0.722 -2.395 -1.289 C05 YKS 10 YKS C06 C11 C 0 1 N N N N N N 14.118 22.329 28.137 -0.308 -3.518 -1.155 C06 YKS 11 YKS C07 C12 C 0 1 N N N N N N 14.583 21.541 26.906 -1.628 -3.078 -1.794 C07 YKS 12 YKS C08 C13 C 0 1 N N N N N N 15.139 22.171 29.276 0.209 -4.771 -1.864 C08 YKS 13 YKS C09 C14 C 0 1 N N N N N N 10.218 21.623 28.007 1.362 -0.145 -0.465 C09 YKS 14 YKS C16 C15 C 0 1 N N N N N N 5.218 22.604 26.404 3.635 2.376 4.082 C16 YKS 15 YKS C24 C16 C 0 1 N N N N N N 7.864 25.656 26.182 -4.447 2.429 -0.603 C24 YKS 16 YKS C25 C17 C 0 1 Y N N N N N 7.598 26.142 27.619 -3.394 3.353 -1.158 C25 YKS 17 YKS C26 C18 C 0 1 Y N N N N N 8.034 25.424 28.763 -2.980 4.449 -0.425 C26 YKS 18 YKS C27 C19 C 0 1 Y N N N N N 7.784 25.897 30.067 -2.014 5.297 -0.935 C27 YKS 19 YKS C28 C20 C 0 1 Y N N N N N 7.098 27.109 30.253 -1.462 5.048 -2.177 C28 YKS 20 YKS C29 C21 C 0 1 Y N N N N N 6.664 27.833 29.142 -1.875 3.951 -2.910 C29 YKS 21 YKS C30 C22 C 0 1 Y N N N N N 6.917 27.353 27.849 -2.838 3.101 -2.399 C30 YKS 22 YKS C31 C23 C 0 1 N N N N N N 9.599 27.529 25.470 -4.847 0.454 0.874 C31 YKS 23 YKS C32 C24 C 0 1 N N N N N N 8.752 28.275 24.408 -4.179 -0.561 1.803 C32 YKS 24 YKS C33 C25 C 0 1 N N N N N N 8.999 29.779 24.479 -5.251 -1.426 2.470 C33 YKS 25 YKS C34 C26 C 0 1 N N N N N N 10.513 30.124 24.204 -6.049 -2.166 1.395 C34 YKS 26 YKS C37 C27 C 0 1 N N N N N N 11.434 29.288 25.175 -6.718 -1.151 0.466 C37 YKS 27 YKS C38 C28 C 0 1 N N N N N N 11.096 27.803 25.205 -5.646 -0.286 -0.200 C38 YKS 28 YKS F35 F1 F 0 1 N N N N N N 10.737 31.412 24.350 -7.029 -2.957 2.004 F35 YKS 29 YKS F36 F2 F 0 1 N N N N N N 10.805 29.886 22.966 -5.188 -2.981 0.653 F36 YKS 30 YKS N03 N1 N 0 1 N N N N N N 11.539 23.561 27.249 -0.954 -0.639 -0.991 N03 YKS 31 YKS N10 N2 N 0 1 N N N N N N 9.812 20.313 27.661 2.596 -0.435 -0.005 N10 YKS 32 YKS N15 N3 N 0 1 N N N N N N 5.213 21.929 25.122 4.638 1.402 4.530 N15 YKS 33 YKS O01 O1 O 0 1 N N N N N N 10.012 23.350 25.591 -1.463 0.320 0.946 O01 YKS 34 YKS O18 O2 O 0 1 N N N N N N 6.555 20.425 23.984 5.534 -0.538 3.769 O18 YKS 35 YKS O20 O3 O 0 1 N N N N N N 9.442 18.300 29.741 3.558 0.815 -2.431 O20 YKS 36 YKS O21 O4 O 0 1 N N N N N N 9.521 22.371 28.627 1.121 0.962 -0.896 O21 YKS 37 YKS O22 O5 O 0 1 N N N N N N 10.341 25.399 26.337 -2.969 0.495 -0.674 O22 YKS 38 YKS H1 H1 H 0 1 N N N N N N 8.066 20.323 28.833 3.191 1.576 0.056 H1 YKS 39 YKS H2 H2 H 0 1 N N N N N N 6.578 19.274 27.124 4.963 -0.662 1.132 H2 YKS 40 YKS H3 H3 H 0 1 N N N N N N 7.967 19.159 25.991 5.441 1.052 1.069 H3 YKS 41 YKS H4 H4 H 0 1 N N N N N N 8.112 21.736 26.088 2.980 -0.024 2.537 H4 YKS 42 YKS H5 H5 H 0 1 N N N N N N 5.776 21.137 27.933 4.105 2.739 1.978 H5 YKS 43 YKS H6 H6 H 0 1 N N N N N N 6.835 22.587 27.882 2.405 2.247 2.279 H6 YKS 44 YKS S1 S1 S 0 1 N Y N N N N 9.166 17.658 27.827 5.055 -1.195 -1.547 S1 YKS 45 YKS H8 H8 H 0 1 N N N N N N 7.674 17.925 28.824 5.258 1.193 -1.319 H8 YKS 46 YKS H9 H9 H 0 1 N N N N N N 9.313 25.566 24.550 -3.139 1.763 0.974 H9 YKS 47 YKS H10 H10 H 0 1 N N N N N N 11.902 21.583 26.608 0.113 -1.521 0.584 H10 YKS 48 YKS H11 H11 H 0 1 N N N N N N 12.432 22.467 29.481 0.797 -2.093 -2.334 H11 YKS 49 YKS H12 H12 H 0 1 N N N N N N 12.728 20.823 28.820 1.693 -2.749 -0.942 H12 YKS 50 YKS H13 H13 H 0 1 N N N N N N 14.076 23.394 27.864 -0.471 -3.738 -0.100 H13 YKS 51 YKS H14 H14 H 0 1 N N N N N N 15.591 21.873 26.617 -2.323 -3.917 -1.803 H14 YKS 52 YKS H15 H15 H 0 1 N N N N N N 14.604 20.467 27.145 -2.055 -2.258 -1.217 H15 YKS 53 YKS H16 H16 H 0 1 N N N N N N 13.886 21.718 26.073 -1.444 -2.747 -2.816 H16 YKS 54 YKS H17 H17 H 0 1 N N N N N N 14.799 22.738 30.155 1.149 -5.084 -1.409 H17 YKS 55 YKS H18 H18 H 0 1 N N N N N N 15.232 21.107 29.540 -0.525 -5.571 -1.769 H18 YKS 56 YKS H19 H19 H 0 1 N N N N N N 16.116 22.554 28.948 0.371 -4.551 -2.919 H19 YKS 57 YKS H20 H20 H 0 1 N N N N N N 5.500 23.660 26.278 3.998 3.391 4.242 H20 YKS 58 YKS H21 H21 H 0 1 N N N N N N 4.224 22.543 26.871 2.696 2.224 4.613 H21 YKS 59 YKS H22 H22 H 0 1 N N N N N N 7.111 26.122 25.529 -5.013 1.988 -1.423 H22 YKS 60 YKS H23 H23 H 0 1 N N N N N N 7.734 24.564 26.171 -5.122 2.993 0.042 H23 YKS 61 YKS H24 H24 H 0 1 N N N N N N 8.569 24.495 28.631 -3.411 4.644 0.546 H24 YKS 62 YKS H25 H25 H 0 1 N N N N N N 8.119 25.329 30.922 -1.691 6.154 -0.362 H25 YKS 63 YKS H26 H26 H 0 1 N N N N N N 6.908 27.478 31.250 -0.707 5.710 -2.575 H26 YKS 64 YKS H27 H27 H 0 1 N N N N N N 6.133 28.764 29.278 -1.444 3.756 -3.881 H27 YKS 65 YKS H28 H28 H 0 1 N N N N N N 6.579 27.931 27.002 -3.158 2.242 -2.969 H28 YKS 66 YKS H29 H29 H 0 1 N N N N N N 9.354 27.967 26.449 -5.518 1.089 1.453 H29 YKS 67 YKS H30 H30 H 0 1 N N N N N N 7.686 28.075 24.591 -3.508 -1.196 1.225 H30 YKS 68 YKS H31 H31 H 0 1 N N N N N N 9.026 27.911 23.407 -3.610 -0.034 2.569 H31 YKS 69 YKS H32 H32 H 0 1 N N N N N N 8.725 30.140 25.481 -4.774 -2.149 3.132 H32 YKS 70 YKS H33 H33 H 0 1 N N N N N N 8.374 30.281 23.725 -5.922 -0.791 3.048 H33 YKS 71 YKS H34 H34 H 0 1 N N N N N N 12.478 29.401 24.848 -7.287 -1.679 -0.299 H34 YKS 72 YKS H35 H35 H 0 1 N N N N N N 11.323 29.691 26.193 -7.389 -0.516 1.045 H35 YKS 73 YKS H36 H36 H 0 1 N N N N N N 11.366 27.362 24.234 -6.122 0.437 -0.862 H36 YKS 74 YKS H37 H37 H 0 1 N N N N N N 11.686 27.325 26.001 -4.975 -0.921 -0.779 H37 YKS 75 YKS H38 H38 H 0 1 N N N N N N 12.166 24.186 27.713 -1.177 -0.778 -1.925 H38 YKS 76 YKS H39 H39 H 0 1 N N N N N N 10.448 19.752 27.132 2.789 -1.321 0.340 H39 YKS 77 YKS H40 H40 H 0 1 N N N N N N 4.507 22.052 24.425 5.135 1.470 5.360 H40 YKS 78 YKS H41 H41 H 0 1 N N N N N N 9.550 17.416 30.071 2.792 0.231 -2.511 H41 YKS 79 YKS O1 O6 O 0 1 N Y N N N N ? ? ? 6.063 -1.472 -0.585 O1 YKS 80 YKS O2 O7 O 0 1 N Y N N N N ? ? ? 3.986 -2.104 -1.771 O2 YKS 81 YKS O3 O8 O 0 1 N Y N N N N ? ? ? 5.801 -1.161 -2.873 O3 YKS 82 YKS H7 H7 H 0 1 N Y N N N N ? ? ? 6.200 -2.006 -3.122 H7 YKS 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YKS F36 C34 SING N N 1 YKS O18 C14 DOUB N N 2 YKS C34 F35 SING N N 3 YKS C34 C33 SING N N 4 YKS C34 C37 SING N N 5 YKS C32 C33 SING N N 6 YKS C32 C31 SING N N 7 YKS C14 N15 SING N N 8 YKS C14 C13 SING N N 9 YKS N15 C16 SING N N 10 YKS C37 C38 SING N N 11 YKS C38 C31 SING N N 12 YKS C31 C23 SING N N 13 YKS C23 C24 SING N N 14 YKS C23 O22 SING N N 15 YKS O01 C02 DOUB N N 16 YKS C24 C25 SING N N 17 YKS C13 C12 SING N N 18 YKS C13 C17 SING N N 19 YKS O22 C02 SING N N 20 YKS C02 N03 SING N N 21 YKS C16 C17 SING N N 22 YKS C12 C11 SING N N 23 YKS C07 C06 SING N N 24 YKS N03 C04 SING N N 25 YKS C04 C09 SING N N 26 YKS C04 C05 SING N N 27 YKS C25 C30 DOUB Y N 28 YKS C25 C26 SING Y N 29 YKS N10 C09 SING N N 30 YKS N10 C11 SING N N 31 YKS C30 C29 SING Y N 32 YKS C09 O21 DOUB N N 33 YKS C11 C19 SING N N 34 YKS C06 C05 SING N N 35 YKS C06 C08 SING N N 36 YKS C19 O20 SING N N 37 YKS C26 C27 DOUB Y N 38 YKS C29 C28 DOUB Y N 39 YKS C27 C28 SING Y N 40 YKS C11 H1 SING N N 41 YKS C12 H2 SING N N 42 YKS C12 H3 SING N N 43 YKS C13 H4 SING N N 44 YKS C17 H5 SING N N 45 YKS C17 H6 SING N N 46 YKS C19 S1 SING N N 47 YKS C19 H8 SING N N 48 YKS C23 H9 SING N N 49 YKS C04 H10 SING N N 50 YKS C05 H11 SING N N 51 YKS C05 H12 SING N N 52 YKS C06 H13 SING N N 53 YKS C07 H14 SING N N 54 YKS C07 H15 SING N N 55 YKS C07 H16 SING N N 56 YKS C08 H17 SING N N 57 YKS C08 H18 SING N N 58 YKS C08 H19 SING N N 59 YKS C16 H20 SING N N 60 YKS C16 H21 SING N N 61 YKS C24 H22 SING N N 62 YKS C24 H23 SING N N 63 YKS C26 H24 SING N N 64 YKS C27 H25 SING N N 65 YKS C28 H26 SING N N 66 YKS C29 H27 SING N N 67 YKS C30 H28 SING N N 68 YKS C31 H29 SING N N 69 YKS C32 H30 SING N N 70 YKS C32 H31 SING N N 71 YKS C33 H32 SING N N 72 YKS C33 H33 SING N N 73 YKS C37 H34 SING N N 74 YKS C37 H35 SING N N 75 YKS C38 H36 SING N N 76 YKS C38 H37 SING N N 77 YKS N03 H38 SING N N 78 YKS N10 H39 SING N N 79 YKS N15 H40 SING N N 80 YKS O20 H41 SING N N 81 YKS S1 O1 DOUB N N 82 YKS S1 O2 DOUB N N 83 YKS S1 O3 SING N N 84 YKS O3 H7 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YKS SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OC(Cc1ccccc1)C1CCC(F)(F)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YKS InChI InChI 1.03 "InChI=1S/C28H41F2N3O8S/c1-17(2)14-21(25(35)32-22(26(36)42(38,39)40)16-20-10-13-31-24(20)34)33-27(37)41-23(15-18-6-4-3-5-7-18)19-8-11-28(29,30)12-9-19/h3-7,17,19-23,26,36H,8-16H2,1-2H3,(H,31,34)(H,32,35)(H,33,37)(H,38,39,40)/t20-,21-,22-,23-,26+/m0/s1" YKS InChIKey InChI 1.03 PDAAZWNVPCMYBL-NRAAZAKSSA-N YKS SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)O[C@@H](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" YKS SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)O[CH](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" YKS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)O[C@@H](Cc2ccccc2)C3CCC(CC3)(F)F" YKS SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC(Cc2ccccc2)C3CCC(CC3)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YKS "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-[(N-{[(1S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YKS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(1~{S})-1-[4,4-bis(fluoranyl)cyclohexyl]-2-phenyl-ethoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YKS "Create component" 2021-03-11 RCSB YKS "Initial release" 2021-03-24 RCSB YKS "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YKS _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #