data_YKV # _chem_comp.id YKV _chem_comp.name "(1S,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H41 F2 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 617.702 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YKV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M01 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YKV C11 C1 C 0 1 N N S N N N 8.547 19.813 27.970 3.804 -0.565 -0.255 C11 YKV 1 YKV C12 C2 C 0 1 N N N N N N 7.531 19.740 26.805 4.848 -0.485 0.861 C12 YKV 2 YKV C13 C3 C 0 1 N N S N N N 7.149 21.116 26.251 4.448 0.605 1.857 C13 YKV 3 YKV C14 C4 C 0 1 N N N N N N 6.191 20.961 25.051 5.468 0.705 2.970 C14 YKV 4 YKV C16 C5 C 0 1 N N N N N N 5.217 22.597 26.410 5.006 2.889 2.330 C16 YKV 5 YKV C17 C6 C 0 1 N N N N N N 6.264 21.857 27.277 4.487 1.996 1.182 C17 YKV 6 YKV O22 O1 O 0 1 N N N N N N 10.355 25.395 26.322 -3.135 0.738 -0.599 O22 YKV 7 YKV C23 C7 C 0 1 N N S N N N 9.291 25.971 25.566 -4.207 1.407 0.116 C23 YKV 8 YKV C02 C8 C 0 1 N N N N N N 10.598 24.063 26.415 -2.108 0.271 0.137 C02 YKV 9 YKV C04 C9 C 0 1 N N S N N N 11.672 22.135 27.625 0.033 -0.875 0.330 C04 YKV 10 YKV C05 C10 C 0 1 N N N N N N 12.792 21.939 28.615 -0.112 -2.398 0.326 C05 YKV 11 YKV C06 C11 C 0 1 N N N N N N 14.182 22.359 28.118 -1.406 -2.789 1.042 C06 YKV 12 YKV C07 C12 C 0 1 N N N N N N 14.612 21.543 26.894 -1.622 -4.298 0.918 C07 YKV 13 YKV C08 C13 C 0 1 N N N N N N 15.214 22.203 29.244 -1.307 -2.407 2.520 C08 YKV 14 YKV C09 C14 C 0 1 N N N N N N 10.348 21.523 28.212 1.368 -0.496 -0.258 C09 YKV 15 YKV C19 C15 C 0 1 N N S N N N 8.831 18.413 28.574 4.229 -1.621 -1.277 C19 YKV 16 YKV C24 C16 C 0 1 N N N N N N 7.864 25.654 26.182 -4.679 2.619 -0.691 C24 YKV 17 YKV C25 C17 C 0 1 Y N N N N N 7.598 26.143 27.620 -3.565 3.630 -0.777 C25 YKV 18 YKV C26 C18 C 0 1 Y N N N N N 8.031 25.423 28.764 -3.442 4.608 0.192 C26 YKV 19 YKV C27 C19 C 0 1 Y N N N N N 7.782 25.897 30.068 -2.420 5.535 0.113 C27 YKV 20 YKV C28 C20 C 0 1 Y N N N N N 7.099 27.111 30.254 -1.520 5.484 -0.935 C28 YKV 21 YKV C29 C21 C 0 1 Y N N N N N 6.667 27.837 29.143 -1.643 4.506 -1.904 C29 YKV 22 YKV C30 C22 C 0 1 Y N N N N N 6.920 27.356 27.850 -2.662 3.576 -1.823 C30 YKV 23 YKV C31 C23 C 0 1 N N N N N N 9.594 27.530 25.465 -5.374 0.438 0.310 C31 YKV 24 YKV C32 C24 C 0 1 N N N N N N 8.744 28.278 24.403 -4.943 -0.702 1.235 C32 YKV 25 YKV C33 C25 C 0 1 N N N N N N 8.992 29.782 24.471 -6.110 -1.672 1.429 C33 YKV 26 YKV C34 C26 C 0 1 N N N N N N 10.506 30.125 24.194 -6.527 -2.245 0.073 C34 YKV 27 YKV C37 C27 C 0 1 N N N N N N 11.426 29.293 25.169 -6.959 -1.106 -0.852 C37 YKV 28 YKV C38 C28 C 0 1 N N N N N N 11.090 27.808 25.203 -5.792 -0.136 -1.046 C38 YKV 29 YKV F35 F1 F 0 1 N N N N N N 10.731 31.413 24.332 -7.595 -3.132 0.250 F35 YKV 30 YKV F36 F2 F 0 1 N N N N N N 10.798 29.879 22.957 -5.446 -2.925 -0.498 F36 YKV 31 YKV N03 N1 N 0 1 N N N N N N 11.485 23.571 27.360 -1.039 -0.280 -0.471 N03 YKV 32 YKV N10 N2 N 0 1 N N N N N N 9.765 20.458 27.530 2.506 -0.933 0.317 N10 YKV 33 YKV N15 N3 N 0 1 N N N N N N 5.112 21.822 25.192 5.766 1.993 3.211 N15 YKV 34 YKV O01 O2 O 0 1 N N N N N N 10.019 23.318 25.643 -2.145 0.347 1.349 O01 YKV 35 YKV O18 O3 O 0 1 N N N N N N 6.359 20.205 24.120 5.946 -0.241 3.560 O18 YKV 36 YKV O20 O4 O 0 1 N N N N N N 7.664 17.857 29.084 3.213 -1.756 -2.273 O20 YKV 37 YKV O21 O5 O 0 1 N N N N N N 9.861 21.973 29.209 1.419 0.202 -1.249 O21 YKV 38 YKV H1 H1 H 0 1 N N N N N N 8.093 20.425 28.763 3.723 0.405 -0.746 H1 YKV 39 YKV H2 H2 H 0 1 N N N N N N 6.619 19.243 27.167 4.904 -1.444 1.375 H2 YKV 40 YKV H3 H3 H 0 1 N N N N N N 7.974 19.146 25.992 5.821 -0.246 0.431 H3 YKV 41 YKV H4 H4 H 0 1 N N N N N N 8.037 21.707 25.984 3.456 0.405 2.262 H4 YKV 42 YKV H5 H5 H 0 1 N N N N N N 5.555 23.620 26.188 5.656 3.671 1.936 H5 YKV 43 YKV H6 H6 H 0 1 N N N N N N 4.247 22.635 26.927 4.170 3.332 2.871 H6 YKV 44 YKV H7 H7 H 0 1 N N N N N N 5.774 21.144 27.957 5.179 2.001 0.340 H7 YKV 45 YKV H8 H8 H 0 1 N N N N N N 6.861 22.572 27.863 3.490 2.305 0.867 H8 YKV 46 YKV H9 H9 H 0 1 N N N N N N 9.306 25.566 24.543 -3.844 1.738 1.089 H9 YKV 47 YKV H10 H10 H 0 1 N N N N N N 11.916 21.611 26.689 -0.031 -0.506 1.354 H10 YKV 48 YKV H11 H11 H 0 1 N N N N N N 12.559 22.529 29.514 -0.142 -2.758 -0.702 H11 YKV 49 YKV H12 H12 H 0 1 N N N N N N 12.832 20.871 28.877 0.738 -2.845 0.842 H12 YKV 50 YKV H13 H13 H 0 1 N N N N N N 14.141 23.420 27.831 -2.246 -2.263 0.587 H13 YKV 51 YKV H14 H14 H 0 1 N N N N N N 15.610 21.870 26.567 -0.783 -4.824 1.373 H14 YKV 52 YKV H15 H15 H 0 1 N N N N N N 14.645 20.476 27.158 -2.545 -4.576 1.428 H15 YKV 53 YKV H16 H16 H 0 1 N N N N N N 13.890 21.697 26.079 -1.693 -4.570 -0.135 H16 YKV 54 YKV H17 H17 H 0 1 N N N N N N 14.897 22.792 30.117 -0.468 -2.933 2.975 H17 YKV 55 YKV H18 H18 H 0 1 N N N N N N 15.292 21.143 29.526 -1.153 -1.332 2.609 H18 YKV 56 YKV H19 H19 H 0 1 N N N N N N 16.194 22.563 28.896 -2.230 -2.685 3.030 H19 YKV 57 YKV H20 H20 H 0 1 N N N N N N 9.535 18.569 29.405 4.373 -2.577 -0.773 H20 YKV 58 YKV S1 S1 S 0 1 N Y N N N N 9.201 17.776 27.798 5.782 -1.111 -2.062 S1 YKV 59 YKV H22 H22 H 0 1 N N N N N N 7.110 26.118 25.529 -4.959 2.300 -1.695 H22 YKV 60 YKV H23 H23 H 0 1 N N N N N N 7.734 24.562 26.174 -5.541 3.069 -0.199 H23 YKV 61 YKV H24 H24 H 0 1 N N N N N N 8.563 24.492 28.633 -4.145 4.647 1.011 H24 YKV 62 YKV H25 H25 H 0 1 N N N N N N 8.116 25.328 30.923 -2.324 6.299 0.870 H25 YKV 63 YKV H26 H26 H 0 1 N N N N N N 6.909 27.480 31.251 -0.722 6.209 -0.997 H26 YKV 64 YKV H27 H27 H 0 1 N N N N N N 6.138 28.769 29.279 -0.940 4.467 -2.724 H27 YKV 65 YKV H28 H28 H 0 1 N N N N N N 6.584 27.935 27.003 -2.755 2.809 -2.578 H28 YKV 66 YKV H29 H29 H 0 1 N N N N N N 9.347 27.965 26.445 -6.217 0.967 0.755 H29 YKV 67 YKV H30 H30 H 0 1 N N N N N N 7.678 28.080 24.589 -4.100 -1.232 0.789 H30 YKV 68 YKV H31 H31 H 0 1 N N N N N N 9.015 27.913 23.402 -4.645 -0.294 2.201 H31 YKV 69 YKV H32 H32 H 0 1 N N N N N N 8.720 30.145 25.473 -5.802 -2.484 2.087 H32 YKV 70 YKV H33 H33 H 0 1 N N N N N N 8.367 30.283 23.717 -6.952 -1.142 1.874 H33 YKV 71 YKV H34 H34 H 0 1 N N N N N N 12.471 29.406 24.843 -7.256 -1.514 -1.818 H34 YKV 72 YKV H35 H35 H 0 1 N N N N N N 11.313 29.699 26.185 -7.801 -0.576 -0.407 H35 YKV 73 YKV H36 H36 H 0 1 N N N N N N 11.364 27.365 24.234 -6.099 0.676 -1.705 H36 YKV 74 YKV H37 H37 H 0 1 N N N N N N 11.679 27.334 26.002 -4.949 -0.666 -1.491 H37 YKV 75 YKV H38 H38 H 0 1 N N N N N N 12.026 24.225 27.889 -0.980 -0.283 -1.440 H38 YKV 76 YKV H39 H39 H 0 1 N N N N N N 10.208 20.124 26.698 2.466 -1.491 1.109 H39 YKV 77 YKV H40 H40 H 0 1 N N N N N N 4.360 21.897 24.537 6.401 2.293 3.880 H40 YKV 78 YKV H41 H41 H 0 1 N N N N N N 7.854 17.001 29.450 2.353 -2.027 -1.923 H41 YKV 79 YKV O1 O6 O 0 1 N Y N N N N ? ? ? 6.209 -2.086 -3.003 O1 YKV 80 YKV O2 O7 O 0 1 N Y N N N N ? ? ? 5.739 0.268 -2.405 O2 YKV 81 YKV O3 O8 O 0 1 N Y N N N N ? ? ? 6.815 -1.188 -0.947 O3 YKV 82 YKV H21 H21 H 0 1 N Y N N N N ? ? ? 7.709 -0.940 -1.221 H21 YKV 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YKV F36 C34 SING N N 1 YKV O18 C14 DOUB N N 2 YKV C34 F35 SING N N 3 YKV C34 C33 SING N N 4 YKV C34 C37 SING N N 5 YKV C32 C33 SING N N 6 YKV C32 C31 SING N N 7 YKV C14 N15 SING N N 8 YKV C14 C13 SING N N 9 YKV C37 C38 SING N N 10 YKV N15 C16 SING N N 11 YKV C38 C31 SING N N 12 YKV C31 C23 SING N N 13 YKV C23 C24 SING N N 14 YKV C23 O22 SING N N 15 YKV O01 C02 DOUB N N 16 YKV C24 C25 SING N N 17 YKV C13 C12 SING N N 18 YKV C13 C17 SING N N 19 YKV O22 C02 SING N N 20 YKV C16 C17 SING N N 21 YKV C02 N03 SING N N 22 YKV C12 C11 SING N N 23 YKV C07 C06 SING N N 24 YKV N03 C04 SING N N 25 YKV N10 C11 SING N N 26 YKV N10 C09 SING N N 27 YKV C25 C30 DOUB Y N 28 YKV C25 C26 SING Y N 29 YKV C04 C09 SING N N 30 YKV C04 C05 SING N N 31 YKV C30 C29 SING Y N 32 YKV C11 C19 SING N N 33 YKV C06 C05 SING N N 34 YKV C06 C08 SING N N 35 YKV C09 O21 DOUB N N 36 YKV C19 O20 SING N N 37 YKV C26 C27 DOUB Y N 38 YKV C29 C28 DOUB Y N 39 YKV C27 C28 SING Y N 40 YKV C11 H1 SING N N 41 YKV C12 H2 SING N N 42 YKV C12 H3 SING N N 43 YKV C13 H4 SING N N 44 YKV C16 H5 SING N N 45 YKV C16 H6 SING N N 46 YKV C17 H7 SING N N 47 YKV C17 H8 SING N N 48 YKV C23 H9 SING N N 49 YKV C04 H10 SING N N 50 YKV C05 H11 SING N N 51 YKV C05 H12 SING N N 52 YKV C06 H13 SING N N 53 YKV C07 H14 SING N N 54 YKV C07 H15 SING N N 55 YKV C07 H16 SING N N 56 YKV C08 H17 SING N N 57 YKV C08 H18 SING N N 58 YKV C08 H19 SING N N 59 YKV C19 H20 SING N N 60 YKV C19 S1 SING N N 61 YKV C24 H22 SING N N 62 YKV C24 H23 SING N N 63 YKV C26 H24 SING N N 64 YKV C27 H25 SING N N 65 YKV C28 H26 SING N N 66 YKV C29 H27 SING N N 67 YKV C30 H28 SING N N 68 YKV C31 H29 SING N N 69 YKV C32 H30 SING N N 70 YKV C32 H31 SING N N 71 YKV C33 H32 SING N N 72 YKV C33 H33 SING N N 73 YKV C37 H34 SING N N 74 YKV C37 H35 SING N N 75 YKV C38 H36 SING N N 76 YKV C38 H37 SING N N 77 YKV N03 H38 SING N N 78 YKV N10 H39 SING N N 79 YKV N15 H40 SING N N 80 YKV O20 H41 SING N N 81 YKV S1 O1 DOUB N N 82 YKV S1 O2 DOUB N N 83 YKV S1 O3 SING N N 84 YKV O3 H21 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YKV SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OC(Cc1ccccc1)C1CCC(F)(F)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YKV InChI InChI 1.03 "InChI=1S/C28H41F2N3O8S/c1-17(2)14-21(25(35)32-22(26(36)42(38,39)40)16-20-10-13-31-24(20)34)33-27(37)41-23(15-18-6-4-3-5-7-18)19-8-11-28(29,30)12-9-19/h3-7,17,19-23,26,36H,8-16H2,1-2H3,(H,31,34)(H,32,35)(H,33,37)(H,38,39,40)/t20-,21-,22-,23-,26-/m0/s1" YKV InChIKey InChI 1.03 PDAAZWNVPCMYBL-KQWWLPFYSA-N YKV SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)O[C@@H](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" YKV SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)O[CH](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" YKV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)O[C@@H](Cc2ccccc2)C3CCC(CC3)(F)F" YKV SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC(Cc2ccccc2)C3CCC(CC3)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YKV "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[(1S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YKV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(1~{S})-1-[4,4-bis(fluoranyl)cyclohexyl]-2-phenyl-ethoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YKV "Create component" 2021-03-11 RCSB YKV "Initial release" 2021-03-24 RCSB YKV "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YKV _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #