data_YKX # _chem_comp.id YKX _chem_comp.name "N-[(1'S,3aS,5R,15S,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-17-methyl-13,15-dioxo-2,3,3',3a,4,4',13,16,17,18,21,21a-dodecahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalen]-15-yl]-3-methoxy-1-methyl-1H-pyrazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H45 Cl F N5 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-09 _chem_comp.pdbx_modified_date 2023-05-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 770.310 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YKX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G3W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YKX C1 C1 C 0 1 N N N -24.860 58.752 7.309 10.443 0.315 -1.292 C1 YKX 1 YKX C3 C2 C 0 1 Y N N -23.044 58.378 5.798 8.238 1.204 -1.252 C3 YKX 2 YKX C6 C3 C 0 1 N N N -23.476 58.582 2.230 7.205 3.943 -3.369 C6 YKX 3 YKX C7 C4 C 0 1 Y N N -21.750 58.127 3.989 6.357 2.388 -1.609 C7 YKX 4 YKX C8 C5 C 0 1 Y N N -21.731 58.076 5.373 6.884 1.351 -0.862 C8 YKX 5 YKX C15 C6 C 0 1 N N N -15.961 55.960 6.041 2.224 1.399 1.840 C15 YKX 6 YKX C17 C7 C 0 1 Y N N -15.145 55.497 4.916 0.768 1.691 1.820 C17 YKX 7 YKX C18 C8 C 0 1 Y N N -15.622 54.555 3.963 0.279 2.921 2.308 C18 YKX 8 YKX C19 C9 C 0 1 Y N N -14.832 54.208 2.915 -1.062 3.089 2.469 C19 YKX 9 YKX C23 C10 C 0 1 N N S -10.492 55.185 1.733 -4.525 1.220 0.737 C23 YKX 10 YKX C24 C11 C 0 1 N N N -9.234 54.935 2.569 -4.740 0.121 1.765 C24 YKX 11 YKX C27 C12 C 0 1 Y N N -8.849 55.547 -0.172 -6.917 0.765 0.018 C27 YKX 12 YKX C31 C13 C 0 1 Y N N -10.906 55.587 -2.020 -6.793 2.875 -1.764 C31 YKX 13 YKX C32 C14 C 0 1 Y N N -11.177 55.423 -0.690 -5.701 2.555 -0.985 C32 YKX 14 YKX C33 C15 C 0 1 Y N N -10.152 55.387 0.267 -5.757 1.497 -0.084 C33 YKX 15 YKX C34 C16 C 0 1 N N N -11.175 56.432 2.250 -3.296 0.953 -0.117 C34 YKX 16 YKX C36 C17 C 0 1 N N N -11.167 57.160 4.615 -1.546 -0.603 -0.474 C36 YKX 17 YKX C37 C18 C 0 1 N N S -11.748 58.599 4.663 -2.073 -1.961 -0.888 C37 YKX 18 YKX C39 C19 C 0 1 N N N -11.314 59.489 3.479 -3.510 -1.908 -1.442 C39 YKX 19 YKX C40 C20 C 0 1 N N N -11.300 60.903 4.082 -4.116 -3.235 -0.938 C40 YKX 20 YKX O41 O1 O 0 1 N N N -11.005 60.744 5.464 -3.448 -3.530 0.293 O41 YKX 21 YKX O2 O2 O 0 1 N N N -23.476 58.434 7.087 9.118 0.293 -0.758 O2 YKX 22 YKX N4 N1 N 0 1 Y N N -23.773 58.587 4.728 8.491 2.095 -2.175 N4 YKX 23 YKX N5 N2 N 0 1 Y N N -22.991 58.430 3.595 7.332 2.844 -2.409 N5 YKX 24 YKX C9 C21 C 0 1 N N N -20.586 57.781 6.259 6.172 0.551 0.148 C9 YKX 25 YKX O10 O3 O 0 1 N N N -20.637 58.046 7.444 6.753 -0.340 0.738 O10 YKX 26 YKX N11 N3 N 0 1 N N N -19.494 57.193 5.756 4.876 0.805 0.418 N11 YKX 27 YKX S12 S1 S 0 1 N N S -18.187 56.851 6.680 4.042 -0.174 1.451 S12 YKX 28 YKX O13 O4 O 0 1 N N N -18.571 55.896 7.655 4.506 0.037 2.770 O13 YKX 29 YKX N14 N4 N 0 1 N N N -17.194 56.298 5.717 2.578 0.193 1.394 N14 YKX 30 YKX O16 O5 O 0 1 N N N -15.483 56.071 7.162 3.034 2.212 2.260 O16 YKX 31 YKX C20 C22 C 0 1 Y N N -13.549 54.761 2.757 -1.953 2.095 2.040 C20 YKX 32 YKX O21 O6 O 0 1 N N N -12.811 54.340 1.690 -3.226 2.237 2.448 O21 YKX 33 YKX C22 C23 C 0 1 N N N -11.437 53.956 1.869 -4.242 2.534 1.510 C22 YKX 34 YKX C25 C24 C 0 1 N N N -8.041 55.834 2.191 -5.647 -0.983 1.224 C25 YKX 35 YKX C26 C25 C 0 1 N N N -7.654 55.520 0.761 -7.036 -0.400 0.966 C26 YKX 36 YKX C28 C26 C 0 1 Y N N -8.582 55.723 -1.521 -8.018 1.087 -0.762 C28 YKX 37 YKX C29 C27 C 0 1 Y N N -9.605 55.741 -2.446 -7.960 2.140 -1.653 C29 YKX 38 YKX CL30 CL1 CL 0 0 N N N -9.279 55.958 -4.124 -9.342 2.541 -2.626 CL30 YKX 39 YKX N35 N5 N 0 1 N N N -11.817 56.354 3.543 -2.326 0.073 0.593 N35 YKX 40 YKX C42 C28 C 0 1 N N R -11.176 59.378 5.867 -2.124 -2.966 0.276 C42 YKX 41 YKX C44 C29 C 0 1 N N R -12.042 59.299 7.125 -1.137 -4.109 0.118 C44 YKX 42 YKX O46 O7 O 0 1 N N N -11.398 59.912 8.249 -1.699 -5.083 -0.768 O46 YKX 43 YKX C47 C30 C 0 1 N N N -10.274 59.242 8.829 -1.273 -6.422 -0.506 C47 YKX 44 YKX C48 C31 C 0 1 N N N -13.356 60.029 6.941 0.215 -3.723 -0.397 C48 YKX 45 YKX F49 F1 F 0 1 N N N -13.334 61.298 6.526 0.370 -3.198 -1.630 F49 YKX 46 YKX C50 C32 C 0 1 N N N -14.508 59.455 7.182 1.271 -3.916 0.366 C50 YKX 47 YKX C51 C33 C 0 1 N N N -15.813 60.197 7.018 2.661 -3.637 -0.133 C51 YKX 48 YKX C52 C34 C 0 1 N N S -16.847 59.299 6.337 2.970 -2.145 -0.094 C52 YKX 49 YKX C54 C35 C 0 1 N N N -17.900 60.156 5.634 3.317 -1.668 -1.507 C54 YKX 50 YKX C55 C36 C 0 1 N N N -17.529 58.404 7.384 4.163 -1.885 0.838 C55 YKX 51 YKX C56 C37 C 0 1 Y N N -13.026 55.745 3.716 -1.473 0.938 1.290 C56 YKX 52 YKX C57 C38 C 0 1 Y N N -13.902 56.087 4.775 -0.095 0.732 1.296 C57 YKX 53 YKX H1 H1 H 0 1 N N N -25.066 58.762 8.390 11.041 -0.460 -0.812 H1 YKX 54 YKX H2 H2 H 0 1 N N N -25.081 59.742 6.885 10.405 0.133 -2.366 H2 YKX 55 YKX H3 H3 H 0 1 N N N -25.493 57.995 6.823 10.894 1.290 -1.104 H3 YKX 56 YKX H4 H4 H 0 1 N N N -24.546 58.837 2.247 7.458 4.884 -2.880 H4 YKX 57 YKX H5 H5 H 0 1 N N N -22.915 59.385 1.729 7.883 3.775 -4.206 H5 YKX 58 YKX H6 H6 H 0 1 N N N -23.333 57.638 1.683 6.179 3.989 -3.736 H6 YKX 59 YKX H7 H7 H 0 1 N N N -20.906 57.952 3.339 5.345 2.761 -1.558 H7 YKX 60 YKX H8 H8 H 0 1 N N N -16.604 54.120 4.072 0.963 3.715 2.570 H8 YKX 61 YKX H9 H9 H 0 1 N N N -15.195 53.495 2.190 -1.448 4.004 2.898 H9 YKX 62 YKX H10 H10 H 0 1 N N N -9.480 55.113 3.626 -3.781 -0.308 2.058 H10 YKX 63 YKX H11 H11 H 0 1 N N N -8.932 53.886 2.435 -5.205 0.555 2.658 H11 YKX 64 YKX H12 H12 H 0 1 N N N -11.713 55.596 -2.738 -6.735 3.698 -2.461 H12 YKX 65 YKX H13 H13 H 0 1 N N N -12.203 55.319 -0.369 -4.793 3.131 -1.079 H13 YKX 66 YKX H14 H14 H 0 1 N N N -10.414 57.225 2.307 -3.567 0.508 -1.061 H14 YKX 67 YKX H15 H15 H 0 1 N N N -11.945 56.714 1.517 -2.782 1.900 -0.308 H15 YKX 68 YKX H16 H16 H 0 1 N N N -11.338 56.671 5.585 -0.517 -0.735 -0.189 H16 YKX 69 YKX H17 H17 H 0 1 N N N -10.086 57.215 4.417 -1.572 0.047 -1.355 H17 YKX 70 YKX H18 H18 H 0 1 N N N -12.846 58.560 4.725 -1.427 -2.371 -1.685 H18 YKX 71 YKX H19 H19 H 0 1 N N N -12.035 59.421 2.651 -4.068 -1.071 -1.035 H19 YKX 72 YKX H20 H20 H 0 1 N N N -10.314 59.205 3.119 -3.504 -1.881 -2.532 H20 YKX 73 YKX H21 H21 H 0 1 N N N -10.528 61.517 3.596 -5.182 -3.115 -0.766 H21 YKX 74 YKX H22 H22 H 0 1 N N N -12.282 61.381 3.955 -3.932 -4.023 -1.663 H22 YKX 75 YKX H23 H23 H 0 1 N N N -19.476 56.955 4.785 4.434 1.563 0.004 H23 YKX 76 YKX H26 H26 H 0 1 N N N -11.314 53.517 2.870 -3.903 3.297 0.814 H26 YKX 77 YKX H27 H27 H 0 1 N N N -11.170 53.210 1.106 -5.148 2.854 2.018 H27 YKX 78 YKX H28 H28 H 0 1 N N N -7.193 55.630 2.861 -5.239 -1.381 0.298 H28 YKX 79 YKX H29 H29 H 0 1 N N N -8.329 56.892 2.276 -5.725 -1.786 1.960 H29 YKX 80 YKX H30 H30 H 0 1 N N N -7.201 54.518 0.728 -7.468 -0.063 1.906 H30 YKX 81 YKX H31 H31 H 0 1 N N N -6.921 56.266 0.420 -7.672 -1.164 0.522 H31 YKX 82 YKX H32 H32 H 0 1 N N N -7.561 55.847 -1.851 -8.926 0.509 -0.674 H32 YKX 83 YKX H33 H33 H 0 1 N N N -10.192 58.948 6.107 -1.955 -2.446 1.220 H33 YKX 84 YKX H34 H34 H 0 1 N N N -12.251 58.241 7.343 -1.008 -4.584 1.097 H34 YKX 85 YKX H35 H35 H 0 1 N N N -9.892 59.832 9.675 -0.189 -6.484 -0.605 H35 YKX 86 YKX H36 H36 H 0 1 N N N -10.583 58.248 9.185 -1.562 -6.703 0.507 H36 YKX 87 YKX H37 H37 H 0 1 N N N -9.483 59.131 8.073 -1.742 -7.099 -1.219 H37 YKX 88 YKX H38 H38 H 0 1 N N N -14.525 58.425 7.506 1.133 -4.317 1.362 H38 YKX 89 YKX H39 H39 H 0 1 N N N -15.647 61.093 6.402 3.380 -4.169 0.490 H39 YKX 90 YKX H40 H40 H 0 1 N N N -16.188 60.497 8.008 2.750 -3.992 -1.161 H40 YKX 91 YKX H41 H41 H 0 1 N N N -16.342 58.664 5.594 2.096 -1.607 0.267 H41 YKX 92 YKX H42 H42 H 0 1 N N N -18.639 59.503 5.147 2.471 -1.850 -2.169 H42 YKX 93 YKX H43 H43 H 0 1 N N N -18.406 60.795 6.373 3.540 -0.601 -1.485 H43 YKX 94 YKX H44 H44 H 0 1 N N N -17.413 60.787 4.876 4.187 -2.214 -1.871 H44 YKX 95 YKX H45 H45 H 0 1 N N N -16.793 58.152 8.162 5.095 -2.013 0.289 H45 YKX 96 YKX H46 H46 H 0 1 N N N -18.361 58.964 7.835 4.133 -2.578 1.678 H46 YKX 97 YKX H47 H47 H 0 1 N N N -13.590 56.830 5.494 0.354 -0.193 0.966 H47 YKX 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YKX CL30 C29 SING N N 1 YKX C29 C31 DOUB Y N 2 YKX C29 C28 SING Y N 3 YKX C31 C32 SING Y N 4 YKX C28 C27 DOUB Y N 5 YKX C32 C33 DOUB Y N 6 YKX C27 C33 SING Y N 7 YKX C27 C26 SING N N 8 YKX C33 C23 SING N N 9 YKX C26 C25 SING N N 10 YKX O21 C22 SING N N 11 YKX O21 C20 SING N N 12 YKX C23 C22 SING N N 13 YKX C23 C34 SING N N 14 YKX C23 C24 SING N N 15 YKX C25 C24 SING N N 16 YKX C6 N5 SING N N 17 YKX C34 N35 SING N N 18 YKX C20 C19 DOUB Y N 19 YKX C20 C56 SING Y N 20 YKX C19 C18 SING Y N 21 YKX C39 C40 SING N N 22 YKX C39 C37 SING N N 23 YKX N35 C56 SING N N 24 YKX N35 C36 SING N N 25 YKX N5 C7 SING Y N 26 YKX N5 N4 SING Y N 27 YKX C56 C57 DOUB Y N 28 YKX C18 C17 DOUB Y N 29 YKX C7 C8 DOUB Y N 30 YKX C40 O41 SING N N 31 YKX C36 C37 SING N N 32 YKX C37 C42 SING N N 33 YKX N4 C3 DOUB Y N 34 YKX C57 C17 SING Y N 35 YKX C17 C15 SING N N 36 YKX C8 C3 SING Y N 37 YKX C8 C9 SING N N 38 YKX O41 C42 SING N N 39 YKX C54 C52 SING N N 40 YKX N14 C15 SING N N 41 YKX N14 S12 DOUB N N 42 YKX N11 C9 SING N N 43 YKX N11 S12 SING N N 44 YKX C3 O2 SING N N 45 YKX C42 C44 SING N N 46 YKX C15 O16 DOUB N N 47 YKX C9 O10 DOUB N N 48 YKX C52 C51 SING N N 49 YKX C52 C55 SING N N 50 YKX F49 C48 SING N N 51 YKX S12 C55 SING N N 52 YKX S12 O13 DOUB N N 53 YKX C48 C44 SING N N 54 YKX C48 C50 DOUB N Z 55 YKX C51 C50 SING N N 56 YKX O2 C1 SING N N 57 YKX C44 O46 SING N N 58 YKX O46 C47 SING N N 59 YKX C1 H1 SING N N 60 YKX C1 H2 SING N N 61 YKX C1 H3 SING N N 62 YKX C6 H4 SING N N 63 YKX C6 H5 SING N N 64 YKX C6 H6 SING N N 65 YKX C7 H7 SING N N 66 YKX C18 H8 SING N N 67 YKX C19 H9 SING N N 68 YKX C24 H10 SING N N 69 YKX C24 H11 SING N N 70 YKX C31 H12 SING N N 71 YKX C32 H13 SING N N 72 YKX C34 H14 SING N N 73 YKX C34 H15 SING N N 74 YKX C36 H16 SING N N 75 YKX C36 H17 SING N N 76 YKX C37 H18 SING N N 77 YKX C39 H19 SING N N 78 YKX C39 H20 SING N N 79 YKX C40 H21 SING N N 80 YKX C40 H22 SING N N 81 YKX N11 H23 SING N N 82 YKX C22 H26 SING N N 83 YKX C22 H27 SING N N 84 YKX C25 H28 SING N N 85 YKX C25 H29 SING N N 86 YKX C26 H30 SING N N 87 YKX C26 H31 SING N N 88 YKX C28 H32 SING N N 89 YKX C42 H33 SING N N 90 YKX C44 H34 SING N N 91 YKX C47 H35 SING N N 92 YKX C47 H36 SING N N 93 YKX C47 H37 SING N N 94 YKX C50 H38 SING N N 95 YKX C51 H39 SING N N 96 YKX C51 H40 SING N N 97 YKX C52 H41 SING N N 98 YKX C54 H42 SING N N 99 YKX C54 H43 SING N N 100 YKX C54 H44 SING N N 101 YKX C55 H45 SING N N 102 YKX C55 H46 SING N N 103 YKX C57 H47 SING N N 104 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YKX SMILES ACDLabs 12.01 "Cn1cc(c(OC)n1)C(=O)NS1(=O)=NC(=O)c2cc3N(CC4(CCCc5cc(Cl)ccc54)COc3cc2)CC2CCOC2C(OC)C(F)=CCC(C)C1" YKX InChI InChI 1.06 "InChI=1S/C38H45ClFN5O7S/c1-23-7-11-30(40)34(49-3)33-26(13-15-51-33)18-45-21-38(14-5-6-24-16-27(39)9-10-29(24)38)22-52-32-12-8-25(17-31(32)45)35(46)42-53(48,20-23)43-36(47)28-19-44(2)41-37(28)50-4/h8-12,16-17,19,23,26,33-34H,5-7,13-15,18,20-22H2,1-4H3,(H,42,43,46,47,48)/b30-11-/t23-,26-,33+,34-,38-,53-/m0/s1" YKX InChIKey InChI 1.06 VFFBTCWSTVFCJE-ORYOOTSUSA-N YKX SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]\1[C@@H]2OCC[C@H]2CN3C[C@@]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N=[S@@](=O)(C[C@@H](C)C/C=C\1F)NC(=O)c7cn(C)nc7OC" YKX SMILES CACTVS 3.385 "CO[CH]1[CH]2OCC[CH]2CN3C[C]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N=[S](=O)(C[CH](C)CC=C1F)NC(=O)c7cn(C)nc7OC" YKX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C/C=C(/[C@@H]([C@H]2[C@@H](CCO2)CN3C[C@@]4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)N=S(=O)(C1)NC(=O)c7cn(nc7OC)C)OC)\F" YKX SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC=C(C(C2C(CCO2)CN3CC4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)N=S(=O)(C1)NC(=O)c7cn(nc7OC)C)OC)F" # _pdbx_chem_comp_identifier.comp_id YKX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "N-[(1'S,3aS,5R,15S,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-17-methyl-13,15-dioxo-2,3,3',3a,4,4',13,16,17,18,21,21a-dodecahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalen]-15-yl]-3-methoxy-1-methyl-1H-pyrazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YKX "Create component" 2023-02-09 RCSB YKX "Initial release" 2023-05-17 RCSB #