data_YKY # _chem_comp.id YKY _chem_comp.name "(1R,2S)-2-((S)-2-((((2-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H28 F N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YKY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M02 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YKY C24 C1 C 0 1 Y N N N N N 11.495 27.598 24.645 6.415 0.300 0.136 C24 YKY 1 YKY C28 C2 C 0 1 Y N N N N N 11.452 30.475 24.750 8.736 0.061 1.622 C28 YKY 2 YKY C04 C3 C 0 1 N N S N N N 12.180 22.104 27.017 0.413 -0.425 -0.450 C04 YKY 3 YKY C05 C4 C 0 1 N N N N N N 13.299 21.816 28.045 0.231 -1.785 -1.127 C05 YKY 4 YKY C06 C5 C 0 1 N N N N N N 14.706 22.273 27.636 -1.013 -1.749 -2.018 C06 YKY 5 YKY C07 C6 C 0 1 N N N N N N 15.223 21.448 26.445 -0.782 -0.776 -3.176 C07 YKY 6 YKY C08 C7 C 0 1 N N N N N N 15.723 22.244 28.830 -1.283 -3.149 -2.574 C08 YKY 7 YKY C09 C8 C 0 1 N N N N N N 10.793 21.535 27.525 -0.679 -0.221 0.568 C09 YKY 8 YKY C12 C9 C 0 1 N N N N N N 7.949 19.657 26.435 -4.110 1.100 0.463 C12 YKY 9 YKY C14 C10 C 0 1 N N N N N N 6.663 20.963 24.534 -4.645 3.192 -0.810 C14 YKY 10 YKY C16 C11 C 0 1 N N N N N N 5.631 22.448 26.048 -4.226 4.555 0.895 C16 YKY 11 YKY C19 C12 C 0 1 N N R N N N 9.253 18.359 28.208 -3.538 -0.967 1.743 C19 YKY 12 YKY C25 C13 C 0 1 Y N N N N N 10.638 28.368 23.838 7.628 0.685 -0.408 C25 YKY 13 YKY C29 C14 C 0 1 Y N N N N N 12.322 29.751 25.572 7.524 -0.322 2.165 C29 YKY 14 YKY C30 C15 C 0 1 Y N N N N N 12.338 28.344 25.515 6.364 -0.203 1.422 C30 YKY 15 YKY O21 O1 O 0 1 N N N N N N 10.152 22.275 28.269 -0.418 -0.260 1.752 O21 YKY 16 YKY C02 C16 C 0 1 N N N N N N 10.990 24.005 25.836 2.807 0.031 -0.461 C02 YKY 17 YKY C11 C17 C 0 1 N N S N N N 8.989 19.727 27.624 -2.981 0.327 1.147 C11 YKY 18 YKY C13 C18 C 0 1 N N R N N N 7.636 20.991 25.724 -3.577 2.445 -0.038 C13 YKY 19 YKY C17 C19 C 0 1 N N N N N N 6.906 21.889 26.745 -3.288 3.393 1.146 C17 YKY 20 YKY C23 C20 C 0 1 N N N N N N 11.519 26.034 24.587 5.149 0.436 -0.670 C23 YKY 21 YKY C27 C21 C 0 1 Y N N N N N 10.607 29.786 23.878 8.789 0.565 0.336 C27 YKY 22 YKY F26 F1 F 0 1 N N N N N N 9.819 27.738 22.988 7.679 1.176 -1.666 F26 YKY 23 YKY N03 N1 N 0 1 N N N N N N 12.002 23.535 26.687 1.717 -0.382 0.216 N03 YKY 24 YKY N10 N2 N 0 1 N N N N N N 10.287 20.299 27.166 -1.944 0.005 0.164 N10 YKY 25 YKY N15 N3 N 0 1 N N N N N N 5.559 21.786 24.725 -4.906 4.345 -0.177 N15 YKY 26 YKY O01 O2 O 0 1 N N N N N N 10.251 23.245 25.234 2.693 0.452 -1.595 O01 YKY 27 YKY O18 O3 O 0 1 N N N N N N 6.854 20.303 23.524 -5.174 2.813 -1.834 O18 YKY 28 YKY O20 O4 O 0 1 N N N N N N 10.127 18.533 29.315 -2.511 -1.632 2.481 O20 YKY 29 YKY O22 O5 O 0 1 N N N N N N 10.813 25.371 25.649 4.021 -0.025 0.118 O22 YKY 30 YKY H1 H1 H 0 1 N N N N N N 11.434 31.554 24.789 9.642 -0.032 2.203 H1 YKY 31 YKY H2 H2 H 0 1 N N N N N N 12.432 21.564 26.092 0.362 0.364 -1.201 H2 YKY 32 YKY H3 H3 H 0 1 N N N N N N 13.036 22.326 28.983 1.107 -2.008 -1.736 H3 YKY 33 YKY H4 H4 H 0 1 N N N N N N 13.332 20.730 28.215 0.111 -2.556 -0.367 H4 YKY 34 YKY H5 H5 H 0 1 N N N N N N 14.629 23.319 27.303 -1.870 -1.419 -1.432 H5 YKY 35 YKY H6 H6 H 0 1 N N N N N N 16.231 21.792 26.170 -1.691 -0.700 -3.773 H6 YKY 36 YKY H7 H7 H 0 1 N N N N N N 15.263 20.385 26.725 -0.525 0.206 -2.780 H7 YKY 37 YKY H8 H8 H 0 1 N N N N N N 14.545 21.576 25.588 0.033 -1.141 -3.801 H8 YKY 38 YKY H9 H9 H 0 1 N N N N N N 15.327 22.841 29.665 -1.446 -3.842 -1.749 H9 YKY 39 YKY H10 H10 H 0 1 N N N N N N 15.871 21.205 29.160 -2.168 -3.123 -3.208 H10 YKY 40 YKY H11 H11 H 0 1 N N N N N N 16.685 22.665 28.502 -0.425 -3.479 -3.160 H11 YKY 41 YKY H12 H12 H 0 1 N N N N N N 7.005 19.262 26.838 -4.487 0.522 -0.381 H12 YKY 42 YKY H13 H13 H 0 1 N N N N N N 8.346 18.961 25.682 -4.917 1.272 1.175 H13 YKY 43 YKY H14 H14 H 0 1 N N N N N N 4.938 23.173 26.449 -4.311 5.429 1.523 H14 YKY 44 YKY S1 S1 S 0 1 N Y N N N N 9.695 17.715 27.476 -4.119 -2.048 0.407 S1 YKY 45 YKY H16 H16 H 0 1 N N N N N N 8.291 17.993 28.597 -4.370 -0.732 2.408 H16 YKY 46 YKY H17 H17 H 0 1 N N N N N N 12.982 30.271 26.251 7.483 -0.716 3.170 H17 YKY 47 YKY H18 H18 H 0 1 N N N N N N 13.019 27.808 26.159 5.418 -0.503 1.848 H18 YKY 48 YKY H19 H19 H 0 1 N N N N N N 8.567 20.373 28.408 -2.552 0.938 1.941 H19 YKY 49 YKY H20 H20 H 0 1 N N N N N N 8.577 21.473 25.419 -2.686 2.302 -0.649 H20 YKY 50 YKY H21 H21 H 0 1 N N N N N N 6.623 21.299 27.629 -2.250 3.726 1.128 H21 YKY 51 YKY H22 H22 H 0 1 N N N N N N 7.561 22.718 27.052 -3.521 2.908 2.094 H22 YKY 52 YKY H23 H23 H 0 1 N N N N N N 11.069 25.722 23.633 5.001 1.482 -0.941 H23 YKY 53 YKY H24 H24 H 0 1 N N N N N N 12.569 25.708 24.621 5.229 -0.165 -1.576 H24 YKY 54 YKY H25 H25 H 0 1 N N N N N N 9.931 30.331 23.235 9.736 0.865 -0.088 H25 YKY 55 YKY H26 H26 H 0 1 N N N N N N 12.633 24.199 27.089 1.796 -0.650 1.145 H26 YKY 56 YKY H27 H27 H 0 1 N N N N N N 10.839 19.741 26.546 -2.169 -0.046 -0.779 H27 YKY 57 YKY H28 H28 H 0 1 N N N N N N 10.314 17.688 29.707 -1.738 -1.872 1.952 H28 YKY 58 YKY O1 O6 O 0 1 N Y N N N N ? ? ? -5.267 -1.493 -0.220 O1 YKY 59 YKY O2 O7 O 0 1 N Y N N N N ? ? ? -3.023 -2.524 -0.361 O2 YKY 60 YKY O3 O8 O 0 1 N Y N N N N ? ? ? -4.643 -3.286 1.121 O3 YKY 61 YKY H15 H15 H 0 1 N Y N N N N ? ? ? -4.992 -3.964 0.527 H15 YKY 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YKY F26 C25 SING N N 1 YKY O18 C14 DOUB N N 2 YKY C25 C27 DOUB Y N 3 YKY C25 C24 SING Y N 4 YKY C27 C28 SING Y N 5 YKY C14 N15 SING N N 6 YKY C14 C13 SING N N 7 YKY C23 C24 SING N N 8 YKY C23 O22 SING N N 9 YKY C24 C30 DOUB Y N 10 YKY N15 C16 DOUB N N 11 YKY C28 C29 DOUB Y N 12 YKY O01 C02 DOUB N N 13 YKY C30 C29 SING Y N 14 YKY O22 C02 SING N N 15 YKY C13 C12 SING N N 16 YKY C13 C17 SING N N 17 YKY C02 N03 SING N N 18 YKY C16 C17 SING N N 19 YKY C12 C11 SING N N 20 YKY C07 C06 SING N N 21 YKY N03 C04 SING N N 22 YKY C04 C09 SING N N 23 YKY C04 C05 SING N N 24 YKY N10 C09 SING N N 25 YKY N10 C11 SING N N 26 YKY C09 O21 DOUB N N 27 YKY C11 C19 SING N N 28 YKY C06 C05 SING N N 29 YKY C06 C08 SING N N 30 YKY C19 O20 SING N N 31 YKY C28 H1 SING N N 32 YKY C04 H2 SING N N 33 YKY C05 H3 SING N N 34 YKY C05 H4 SING N N 35 YKY C06 H5 SING N N 36 YKY C07 H6 SING N N 37 YKY C07 H7 SING N N 38 YKY C07 H8 SING N N 39 YKY C08 H9 SING N N 40 YKY C08 H10 SING N N 41 YKY C08 H11 SING N N 42 YKY C12 H12 SING N N 43 YKY C12 H13 SING N N 44 YKY C16 H14 SING N N 45 YKY C19 S1 SING N N 46 YKY C19 H16 SING N N 47 YKY C29 H17 SING N N 48 YKY C30 H18 SING N N 49 YKY C11 H19 SING N N 50 YKY C13 H20 SING N N 51 YKY C17 H21 SING N N 52 YKY C17 H22 SING N N 53 YKY C23 H23 SING N N 54 YKY C23 H24 SING N N 55 YKY C27 H25 SING N N 56 YKY N03 H26 SING N N 57 YKY N10 H27 SING N N 58 YKY O20 H28 SING N N 59 YKY S1 O1 DOUB N N 60 YKY S1 O2 DOUB N N 61 YKY S1 O3 SING N N 62 YKY O3 H15 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YKY SMILES ACDLabs 12.01 "O=C1N=CCC1CC(NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1F)C(O)S(=O)(=O)O" YKY InChI InChI 1.03 "InChI=1S/C21H28FN3O8S/c1-12(2)9-16(25-21(29)33-11-14-5-3-4-6-15(14)22)19(27)24-17(20(28)34(30,31)32)10-13-7-8-23-18(13)26/h3-6,8,12-13,16-17,20,28H,7,9-11H2,1-2H3,(H,24,27)(H,25,29)(H,30,31,32)/t13-,16-,17-,20+/m0/s1" YKY InChIKey InChI 1.03 VAWJCTITNJHIPN-VZYKRBATSA-N YKY SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1ccccc1F)C(=O)N[C@@H](C[C@@H]2CC=NC2=O)[C@H](O)[S](O)(=O)=O" YKY SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1ccccc1F)C(=O)N[CH](C[CH]2CC=NC2=O)[CH](O)[S](O)(=O)=O" YKY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2F" YKY SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YKY "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-[(N-{[(2-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl]propane-1-sulfonic acid" YKY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(2-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YKY "Create component" 2021-03-12 RCSB YKY "Initial release" 2021-03-24 RCSB YKY "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YKY _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #