data_YL2 # _chem_comp.id YL2 _chem_comp.name "({[6-(4-cyclopropylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methanediyl)bis(phosphonic acid)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 N3 O6 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-04-02 _chem_comp.pdbx_modified_date 2013-12-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.335 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YL2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4JVK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YL2 OAU OAU O 0 1 N N N 16.106 32.510 -10.338 3.083 -2.516 2.181 OAU YL2 1 YL2 PAS PAS P 0 1 N N N 16.558 33.849 -9.592 3.742 -2.098 0.772 PAS YL2 2 YL2 OAV OAV O 0 1 N N N 17.816 33.517 -8.897 5.335 -2.324 0.837 OAV YL2 3 YL2 OAW OAW O 0 1 N N N 16.510 35.006 -10.500 3.169 -2.933 -0.307 OAW YL2 4 YL2 CAR CAR C 0 1 N N N 15.214 34.006 -8.354 3.391 -0.342 0.434 CAR YL2 5 YL2 PAT PAT P 0 1 N N N 15.597 35.430 -7.217 4.136 0.131 -1.160 PAT YL2 6 YL2 OAX OAX O 0 1 N N N 14.129 35.593 -6.646 3.513 -0.776 -2.335 OAX YL2 7 YL2 OAZ OAZ O 0 1 N N N 16.540 34.903 -6.210 3.826 1.683 -1.459 OAZ YL2 8 YL2 OAY OAY O 0 1 N N N 16.004 36.624 -8.002 5.601 -0.076 -1.101 OAY YL2 9 YL2 NAJ NAJ N 0 1 N N N 15.033 32.725 -7.592 1.941 -0.137 0.375 NAJ YL2 10 YL2 C4 C4 C 0 1 Y N N 14.418 31.699 -8.184 1.421 1.143 0.441 C4 YL2 11 YL2 N3 N3 N 0 1 Y N N 13.384 32.009 -8.950 2.223 2.191 0.552 N3 YL2 12 YL2 C2 C2 C 0 1 Y N N 12.688 31.063 -9.633 1.741 3.419 0.610 C2 YL2 13 YL2 N1 N1 N 0 1 Y N N 13.130 29.774 -9.495 0.452 3.668 0.563 N1 YL2 14 YL2 C6 C6 C 0 1 Y N N 14.182 29.495 -8.712 -0.440 2.675 0.452 C6 YL2 15 YL2 SAE SAE S 0 1 Y N N 14.891 28.020 -8.401 -2.195 2.702 0.365 SAE YL2 16 YL2 C5 C5 C 0 1 Y N N 14.867 30.437 -8.035 0.018 1.355 0.385 C5 YL2 17 YL2 CAC CAC C 0 1 Y N N 15.913 29.895 -7.302 -1.069 0.407 0.262 CAC YL2 18 YL2 CAD CAD C 0 1 Y N N 16.037 28.537 -7.402 -2.284 0.955 0.243 CAD YL2 19 YL2 CAK CAK C 0 1 Y N N 16.940 27.670 -6.859 -3.544 0.190 0.128 CAK YL2 20 YL2 CAP CAP C 0 1 Y N N 17.065 26.376 -7.380 -3.512 -1.203 0.041 CAP YL2 21 YL2 CAO CAO C 0 1 Y N N 17.975 25.446 -6.885 -4.691 -1.911 -0.065 CAO YL2 22 YL2 CAL CAL C 0 1 Y N N 17.788 27.975 -5.801 -4.770 0.856 0.111 CAL YL2 23 YL2 CAM CAM C 0 1 Y N N 18.699 27.036 -5.296 -5.942 0.136 0.004 CAM YL2 24 YL2 CAN CAN C 0 1 Y N N 18.801 25.758 -5.832 -5.903 -1.244 -0.088 CAN YL2 25 YL2 CAQ CAQ C 0 1 N N N 19.712 24.762 -5.393 -7.187 -2.025 -0.205 CAQ YL2 26 YL2 CBA CBA C 0 1 N N N 20.085 24.614 -4.013 -8.498 -1.258 -0.022 CBA YL2 27 YL2 CBB CBB C 0 1 N N N 19.184 23.706 -4.588 -8.080 -1.737 -1.414 CBB YL2 28 YL2 H1 H1 H 0 1 N N N 15.887 32.709 -11.241 3.413 -2.009 2.935 H1 YL2 29 YL2 H2 H2 H 0 1 N N N 18.489 34.141 -9.143 5.596 -3.238 1.014 H2 YL2 30 YL2 H3 H3 H 0 1 N N N 14.298 34.273 -8.902 3.813 0.273 1.230 H3 YL2 31 YL2 H4 H4 H 0 1 N N N 13.776 36.433 -6.914 3.865 -0.579 -3.214 H4 YL2 32 YL2 H5 H5 H 0 1 N N N 17.327 35.435 -6.203 2.883 1.892 -1.511 H5 YL2 33 YL2 H6 H6 H 0 1 N N N 15.945 32.408 -7.331 1.347 -0.898 0.290 H6 YL2 34 YL2 H7 H7 H 0 1 N N N 11.836 31.313 -10.248 2.429 4.247 0.700 H7 YL2 35 YL2 H8 H8 H 0 1 N N N 16.577 30.498 -6.700 -0.909 -0.659 0.194 H8 YL2 36 YL2 H9 H9 H 0 1 N N N 16.427 26.087 -8.202 -2.567 -1.725 0.058 H9 YL2 37 YL2 H10 H10 H 0 1 N N N 18.033 24.466 -7.335 -4.668 -2.989 -0.132 H10 YL2 38 YL2 H11 H11 H 0 1 N N N 17.744 28.959 -5.357 -4.801 1.933 0.182 H11 YL2 39 YL2 H12 H12 H 0 1 N N N 19.337 27.313 -4.470 -6.891 0.650 -0.009 H12 YL2 40 YL2 H13 H13 H 0 1 N N N 20.479 24.463 -6.123 -7.148 -3.051 0.159 H13 YL2 41 YL2 H14 H14 H 0 1 N N N 21.102 24.287 -3.751 -9.323 -1.781 0.463 H14 YL2 42 YL2 H15 H15 H 0 1 N N N 19.731 25.341 -3.268 -8.433 -0.190 0.184 H15 YL2 43 YL2 H16 H16 H 0 1 N N N 18.125 23.722 -4.290 -7.739 -0.984 -2.124 H16 YL2 44 YL2 H17 H17 H 0 1 N N N 19.497 22.668 -4.773 -8.629 -2.575 -1.844 H17 YL2 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YL2 OAW PAS DOUB N N 1 YL2 OAU PAS SING N N 2 YL2 C2 N1 DOUB Y N 3 YL2 C2 N3 SING Y N 4 YL2 PAS OAV SING N N 5 YL2 PAS CAR SING N N 6 YL2 N1 C6 SING Y N 7 YL2 N3 C4 DOUB Y N 8 YL2 C6 SAE SING Y N 9 YL2 C6 C5 DOUB Y N 10 YL2 SAE CAD SING Y N 11 YL2 CAR NAJ SING N N 12 YL2 CAR PAT SING N N 13 YL2 C4 C5 SING Y N 14 YL2 C4 NAJ SING N N 15 YL2 C5 CAC SING Y N 16 YL2 OAY PAT DOUB N N 17 YL2 CAD CAC DOUB Y N 18 YL2 CAD CAK SING N N 19 YL2 CAP CAO DOUB Y N 20 YL2 CAP CAK SING Y N 21 YL2 PAT OAX SING N N 22 YL2 PAT OAZ SING N N 23 YL2 CAO CAN SING Y N 24 YL2 CAK CAL DOUB Y N 25 YL2 CAN CAQ SING N N 26 YL2 CAN CAM DOUB Y N 27 YL2 CAL CAM SING Y N 28 YL2 CAQ CBB SING N N 29 YL2 CAQ CBA SING N N 30 YL2 CBB CBA SING N N 31 YL2 OAU H1 SING N N 32 YL2 OAV H2 SING N N 33 YL2 CAR H3 SING N N 34 YL2 OAX H4 SING N N 35 YL2 OAZ H5 SING N N 36 YL2 NAJ H6 SING N N 37 YL2 C2 H7 SING N N 38 YL2 CAC H8 SING N N 39 YL2 CAP H9 SING N N 40 YL2 CAO H10 SING N N 41 YL2 CAL H11 SING N N 42 YL2 CAM H12 SING N N 43 YL2 CAQ H13 SING N N 44 YL2 CBA H14 SING N N 45 YL2 CBA H15 SING N N 46 YL2 CBB H16 SING N N 47 YL2 CBB H17 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YL2 SMILES ACDLabs 12.01 "O=P(O)(O)C(Nc1ncnc2sc(cc12)c3ccc(cc3)C4CC4)P(=O)(O)O" YL2 InChI InChI 1.03 "InChI=1S/C16H17N3O6P2S/c20-26(21,22)16(27(23,24)25)19-14-12-7-13(28-15(12)18-8-17-14)11-5-3-10(4-6-11)9-1-2-9/h3-9,16H,1-2H2,(H,17,18,19)(H2,20,21,22)(H2,23,24,25)" YL2 InChIKey InChI 1.03 VIGDNIIDHDWALF-UHFFFAOYSA-N YL2 SMILES_CANONICAL CACTVS 3.370 "O[P](O)(=O)C(Nc1ncnc2sc(cc12)c3ccc(cc3)C4CC4)[P](O)(O)=O" YL2 SMILES CACTVS 3.370 "O[P](O)(=O)C(Nc1ncnc2sc(cc12)c3ccc(cc3)C4CC4)[P](O)(O)=O" YL2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1c2cc3c(ncnc3s2)NC(P(=O)(O)O)P(=O)(O)O)C4CC4" YL2 SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1c2cc3c(ncnc3s2)NC(P(=O)(O)O)P(=O)(O)O)C4CC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YL2 "SYSTEMATIC NAME" ACDLabs 12.01 "({[6-(4-cyclopropylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methanediyl)bis(phosphonic acid)" YL2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[[6-(4-cyclopropylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]-phosphono-methyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YL2 "Create component" 2013-04-02 RCSB YL2 "Initial release" 2014-01-01 RCSB #