data_YL5 # _chem_comp.id YL5 _chem_comp.name "[(1R)-2-(3-fluorophenyl)-1-{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}ethyl]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H19 F N3 O3 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-12 _chem_comp.pdbx_modified_date 2017-03-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 443.431 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YL5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JV0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YL5 CAY C1 C 0 1 Y N N 3.445 68.479 29.844 1.918 2.427 0.826 CAY YL5 1 YL5 CAZ C2 C 0 1 Y N N 4.706 68.653 30.415 1.688 3.639 0.198 CAZ YL5 2 YL5 FBD F1 F 0 1 N N N 5.546 67.712 30.285 0.487 4.247 0.320 FBD YL5 3 YL5 CBA C3 C 0 1 Y N N 5.057 69.829 31.103 2.688 4.228 -0.556 CBA YL5 4 YL5 CBB C4 C 0 1 Y N N 4.122 70.851 31.227 3.916 3.605 -0.680 CBB YL5 5 YL5 CBC C5 C 0 1 Y N N 2.857 70.675 30.663 4.145 2.395 -0.052 CBC YL5 6 YL5 CAX C6 C 0 1 Y N N 2.510 69.500 29.960 3.146 1.806 0.700 CAX YL5 7 YL5 CAV C7 C 0 1 N N N 1.263 69.342 29.388 3.397 0.487 1.385 CAV YL5 8 YL5 CAC C8 C 0 1 N N R 1.261 69.992 27.958 2.922 -0.654 0.483 CAC YL5 9 YL5 PAA P1 P 0 1 N N N -0.505 70.099 27.267 3.362 -2.252 1.242 PAA YL5 10 YL5 OAD O1 O 0 1 N N N -1.400 70.423 28.642 4.965 -2.396 1.298 OAD YL5 11 YL5 OAU O2 O 0 1 N N N -0.603 71.205 26.283 2.812 -2.314 2.614 OAU YL5 12 YL5 OAE O3 O 0 1 N N N -0.847 68.744 26.759 2.746 -3.451 0.362 OAE YL5 13 YL5 NAB N1 N 0 1 N N N 1.899 71.345 27.896 1.468 -0.574 0.320 NAB YL5 14 YL5 C4 C9 C 0 1 Y N N 3.212 71.524 27.584 0.904 -0.728 -0.933 C4 YL5 15 YL5 N3 N2 N 0 1 Y N N 3.983 70.433 27.340 1.667 -0.948 -1.993 N3 YL5 16 YL5 C2 C10 C 0 1 Y N N 5.341 70.573 27.036 1.141 -1.097 -3.196 C2 YL5 17 YL5 N1 N3 N 0 1 Y N N 5.853 71.870 26.990 -0.153 -1.037 -3.406 N1 YL5 18 YL5 C6 C11 C 0 1 Y N N 5.044 72.927 27.237 -1.008 -0.818 -2.399 C6 YL5 19 YL5 SAN S1 S 0 1 Y N N 5.421 74.588 27.231 -2.760 -0.689 -2.376 SAN YL5 20 YL5 C5 C12 C 0 1 Y N N 3.720 72.791 27.547 -0.505 -0.659 -1.103 C5 YL5 21 YL5 CAL C13 C 0 1 Y N N 3.108 74.007 27.763 -1.556 -0.432 -0.134 CAL YL5 22 YL5 CAM C14 C 0 1 Y N N 3.892 75.122 27.652 -2.787 -0.418 -0.644 CAM YL5 23 YL5 CAO C15 C 0 1 Y N N 3.549 76.446 27.766 -4.017 -0.206 0.149 CAO YL5 24 YL5 CAP C16 C 0 1 Y N N 2.206 76.880 27.734 -3.935 0.008 1.526 CAP YL5 25 YL5 CAQ C17 C 0 1 Y N N 1.891 78.235 27.795 -5.086 0.205 2.260 CAQ YL5 26 YL5 CAR C18 C 0 1 Y N N 2.888 79.205 27.888 -6.320 0.189 1.635 CAR YL5 27 YL5 CAW C19 C 0 1 N N N 2.543 80.562 27.953 -7.573 0.405 2.443 CAW YL5 28 YL5 CAS C20 C 0 1 Y N N 4.216 78.801 27.902 -6.408 -0.023 0.271 CAS YL5 29 YL5 CAT C21 C 0 1 Y N N 4.544 77.448 27.832 -5.264 -0.215 -0.476 CAT YL5 30 YL5 H1 H1 H 0 1 N N N 3.200 67.566 29.321 1.139 1.968 1.418 H1 YL5 31 YL5 H2 H2 H 0 1 N N N 6.043 69.937 31.531 2.510 5.173 -1.047 H2 YL5 32 YL5 H3 H3 H 0 1 N N N 4.370 71.763 31.749 4.697 4.065 -1.268 H3 YL5 33 YL5 H4 H4 H 0 1 N N N 2.123 71.460 30.767 5.105 1.910 -0.150 H4 YL5 34 YL5 H5 H5 H 0 1 N N N 0.506 69.834 30.016 4.464 0.376 1.579 H5 YL5 35 YL5 H6 H6 H 0 1 N N N 1.030 68.270 29.305 2.851 0.457 2.327 H6 YL5 36 YL5 H7 H7 H 0 1 N N N 1.792 69.314 27.274 3.402 -0.570 -0.492 H7 YL5 37 YL5 H8 H8 H 0 1 N N N -1.821 71.270 28.554 5.409 -1.665 1.750 H8 YL5 38 YL5 H9 H9 H 0 1 N N N -1.086 68.800 25.841 1.783 -3.428 0.284 H9 YL5 39 YL5 H10 H10 H 0 1 N N N 1.771 71.754 28.800 0.902 -0.414 1.090 H10 YL5 40 YL5 H11 H11 H 0 1 N N N 5.967 69.714 26.845 1.798 -1.275 -4.034 H11 YL5 41 YL5 H12 H12 H 0 1 N N N 2.059 74.076 28.008 -1.358 -0.288 0.918 H12 YL5 42 YL5 H13 H13 H 0 1 N N N 1.412 76.151 27.661 -2.972 0.020 2.015 H13 YL5 43 YL5 H14 H14 H 0 1 N N N 0.855 78.540 27.770 -5.024 0.371 3.326 H14 YL5 44 YL5 H15 H15 H 0 1 N N N 2.419 80.859 29.005 -7.806 1.469 2.476 H15 YL5 45 YL5 H16 H16 H 0 1 N N N 3.340 81.165 27.493 -8.401 -0.134 1.982 H16 YL5 46 YL5 H17 H17 H 0 1 N N N 1.600 80.727 27.412 -7.420 0.035 3.457 H17 YL5 47 YL5 H18 H18 H 0 1 N N N 5.001 79.540 27.968 -7.375 -0.034 -0.212 H18 YL5 48 YL5 H19 H19 H 0 1 N N N 5.584 77.158 27.828 -5.334 -0.375 -1.542 H19 YL5 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YL5 OAU PAA DOUB N N 1 YL5 OAE PAA SING N N 2 YL5 N1 C2 DOUB Y N 3 YL5 N1 C6 SING Y N 4 YL5 C2 N3 SING Y N 5 YL5 SAN C6 SING Y N 6 YL5 SAN CAM SING Y N 7 YL5 C6 C5 DOUB Y N 8 YL5 PAA CAC SING N N 9 YL5 PAA OAD SING N N 10 YL5 N3 C4 DOUB Y N 11 YL5 C5 C4 SING Y N 12 YL5 C5 CAL SING Y N 13 YL5 C4 NAB SING N N 14 YL5 CAM CAL DOUB Y N 15 YL5 CAM CAO SING N N 16 YL5 CAP CAO DOUB Y N 17 YL5 CAP CAQ SING Y N 18 YL5 CAO CAT SING Y N 19 YL5 CAQ CAR DOUB Y N 20 YL5 CAT CAS DOUB Y N 21 YL5 CAR CAS SING Y N 22 YL5 CAR CAW SING N N 23 YL5 NAB CAC SING N N 24 YL5 CAC CAV SING N N 25 YL5 CAV CAX SING N N 26 YL5 CAY CAX DOUB Y N 27 YL5 CAY CAZ SING Y N 28 YL5 CAX CBC SING Y N 29 YL5 FBD CAZ SING N N 30 YL5 CAZ CBA DOUB Y N 31 YL5 CBC CBB DOUB Y N 32 YL5 CBA CBB SING Y N 33 YL5 CAY H1 SING N N 34 YL5 CBA H2 SING N N 35 YL5 CBB H3 SING N N 36 YL5 CBC H4 SING N N 37 YL5 CAV H5 SING N N 38 YL5 CAV H6 SING N N 39 YL5 CAC H7 SING N N 40 YL5 OAD H8 SING N N 41 YL5 OAE H9 SING N N 42 YL5 NAB H10 SING N N 43 YL5 C2 H11 SING N N 44 YL5 CAL H12 SING N N 45 YL5 CAP H13 SING N N 46 YL5 CAQ H14 SING N N 47 YL5 CAW H15 SING N N 48 YL5 CAW H16 SING N N 49 YL5 CAW H17 SING N N 50 YL5 CAS H18 SING N N 51 YL5 CAT H19 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YL5 SMILES ACDLabs 12.01 "c1c(cccc1F)CC(P(O)(=O)O)Nc2ncnc3c2cc(s3)c4ccc(cc4)C" YL5 InChI InChI 1.03 "InChI=1S/C21H19FN3O3PS/c1-13-5-7-15(8-6-13)18-11-17-20(23-12-24-21(17)30-18)25-19(29(26,27)28)10-14-3-2-4-16(22)9-14/h2-9,11-12,19H,10H2,1H3,(H,23,24,25)(H2,26,27,28)/t19-/m1/s1" YL5 InChIKey InChI 1.03 ASWGUDOBPNZODI-LJQANCHMSA-N YL5 SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(cc1)c2sc3ncnc(N[C@@H](Cc4cccc(F)c4)[P](O)(O)=O)c3c2" YL5 SMILES CACTVS 3.385 "Cc1ccc(cc1)c2sc3ncnc(N[CH](Cc4cccc(F)c4)[P](O)(O)=O)c3c2" YL5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1)c2cc3c(ncnc3s2)N[C@@H](Cc4cccc(c4)F)P(=O)(O)O" YL5 SMILES "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1)c2cc3c(ncnc3s2)NC(Cc4cccc(c4)F)P(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YL5 "SYSTEMATIC NAME" ACDLabs 12.01 "[(1R)-2-(3-fluorophenyl)-1-{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}ethyl]phosphonic acid" YL5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(1~{R})-2-(3-fluorophenyl)-1-[[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]ethyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YL5 "Create component" 2016-05-12 RCSB YL5 "Initial release" 2017-03-15 RCSB #