data_YL6 # _chem_comp.id YL6 _chem_comp.name "[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H18 Cl F N3 O3 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-12 _chem_comp.pdbx_modified_date 2017-03-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.876 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YL6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JV1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YL6 CAP C1 C 0 1 Y N N 3.288 76.461 28.274 -3.714 0.118 0.737 CAP YL6 1 YL6 CAQ C2 C 0 1 Y N N 2.658 77.693 28.397 -4.957 0.458 1.232 CAQ YL6 2 YL6 CL CL1 CL 0 0 N N N 0.972 77.663 28.766 -5.093 1.203 2.795 CL YL6 3 YL6 CAR C3 C 0 1 Y N N 3.371 78.892 28.236 -6.095 0.206 0.486 CAR YL6 4 YL6 CAW C4 C 0 1 N N N 2.709 80.116 28.358 -7.449 0.580 1.032 CAW YL6 5 YL6 CAS C5 C 0 1 Y N N 4.743 78.825 27.949 -5.995 -0.387 -0.760 CAS YL6 6 YL6 CAT C6 C 0 1 Y N N 5.390 77.589 27.824 -4.759 -0.731 -1.266 CAT YL6 7 YL6 CAO C7 C 0 1 Y N N 4.666 76.378 27.979 -3.607 -0.475 -0.522 CAO YL6 8 YL6 CAM C8 C 0 1 Y N N 5.274 75.166 27.831 -2.279 -0.841 -1.059 CAM YL6 9 YL6 SAN S1 S 0 1 Y N N 6.749 74.954 26.965 -2.016 -1.595 -2.621 SAN YL6 10 YL6 CAL C9 C 0 1 Y N N 4.831 73.938 28.262 -1.126 -0.637 -0.422 CAL YL6 11 YL6 C5 C10 C 0 1 Y N N 5.635 72.849 27.973 0.048 -1.077 -1.144 C5 YL6 12 YL6 C6 C11 C 0 1 Y N N 6.767 73.189 27.262 -0.275 -1.635 -2.385 C6 YL6 13 YL6 N1 N1 N 0 1 Y N N 7.675 72.258 26.872 0.710 -2.087 -3.171 N1 YL6 14 YL6 C2 C12 C 0 1 Y N N 7.508 70.904 27.183 1.965 -2.018 -2.793 C2 YL6 15 YL6 N3 N2 N 0 1 Y N N 6.371 70.574 27.915 2.323 -1.505 -1.629 N3 YL6 16 YL6 C4 C13 C 0 1 Y N N 5.464 71.525 28.287 1.422 -1.023 -0.786 C4 YL6 17 YL6 NAB N3 N 0 1 N N N 4.361 71.153 29.002 1.811 -0.482 0.425 NAB YL6 18 YL6 CAC C14 C 0 1 N N R 4.144 69.723 29.397 3.231 -0.432 0.782 CAC YL6 19 YL6 PAA P1 P 0 1 N N N 2.728 69.137 28.457 3.591 -1.715 2.026 PAA YL6 20 YL6 OAD O1 O 0 1 N N N 3.638 68.643 27.137 2.864 -1.406 3.278 OAD YL6 21 YL6 OAU O2 O 0 1 N N N 2.101 68.036 29.260 3.115 -3.149 1.471 OAU YL6 22 YL6 OAE O3 O 0 1 N N N 1.858 70.299 28.052 5.173 -1.751 2.319 OAE YL6 23 YL6 CAV C15 C 0 1 N N N 3.974 69.470 30.933 3.564 0.945 1.360 CAV YL6 24 YL6 CAX C16 C 0 1 Y N N 4.912 70.260 31.585 3.389 1.993 0.291 CAX YL6 25 YL6 CAY C17 C 0 1 Y N N 4.481 71.242 32.483 2.201 2.694 0.198 CAY YL6 26 YL6 CAZ C18 C 0 1 Y N N 5.428 72.058 33.123 2.041 3.656 -0.784 CAZ YL6 27 YL6 FBD F1 F 0 1 N N N 4.988 72.967 33.994 0.880 4.341 -0.876 FBD YL6 28 YL6 CBA C19 C 0 1 Y N N 6.806 71.918 32.877 3.071 3.917 -1.672 CBA YL6 29 YL6 CBB C20 C 0 1 Y N N 7.235 70.956 31.951 4.258 3.216 -1.577 CBB YL6 30 YL6 CBC C21 C 0 1 Y N N 6.295 70.134 31.309 4.419 2.258 -0.592 CBC YL6 31 YL6 H1 H1 H 0 1 N N N 2.716 75.555 28.406 -2.826 0.315 1.319 H1 YL6 32 YL6 H2 H2 H 0 1 N N N 2.324 80.425 27.375 -7.695 1.597 0.729 H2 YL6 33 YL6 H3 H3 H 0 1 N N N 1.871 80.011 29.063 -8.201 -0.107 0.643 H3 YL6 34 YL6 H4 H4 H 0 1 N N N 3.410 80.876 28.732 -7.431 0.520 2.121 H4 YL6 35 YL6 H5 H5 H 0 1 N N N 5.307 79.737 27.823 -6.887 -0.582 -1.337 H5 YL6 36 YL6 H6 H6 H 0 1 N N N 6.448 77.557 27.608 -4.683 -1.195 -2.239 H6 YL6 37 YL6 H7 H7 H 0 1 N N N 3.901 73.828 28.800 -1.073 -0.178 0.555 H7 YL6 38 YL6 H8 H8 H 0 1 N N N 8.222 70.156 26.872 2.732 -2.393 -3.455 H8 YL6 39 YL6 H9 H9 H 0 1 N N N 4.380 71.683 29.850 1.145 -0.135 1.039 H9 YL6 40 YL6 H10 H10 H 0 1 N N N 4.999 69.125 29.047 3.836 -0.609 -0.107 H10 YL6 41 YL6 H11 H11 H 0 1 N N N 2.328 67.196 28.878 2.170 -3.201 1.273 H11 YL6 42 YL6 H12 H12 H 0 1 N N N 2.009 70.505 27.137 5.515 -0.946 2.733 H12 YL6 43 YL6 H13 H13 H 0 1 N N N 2.959 69.750 31.251 2.895 1.161 2.193 H13 YL6 44 YL6 H14 H14 H 0 1 N N N 4.150 68.409 31.162 4.596 0.953 1.710 H14 YL6 45 YL6 H15 H15 H 0 1 N N N 3.428 71.372 32.683 1.398 2.489 0.890 H15 YL6 46 YL6 H16 H16 H 0 1 N N N 7.522 72.541 33.393 2.947 4.667 -2.438 H16 YL6 47 YL6 H17 H17 H 0 1 N N N 8.287 70.848 31.732 5.062 3.418 -2.269 H17 YL6 48 YL6 H18 H18 H 0 1 N N N 6.631 69.396 30.596 5.348 1.714 -0.516 H18 YL6 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YL6 N1 C2 DOUB Y N 1 YL6 N1 C6 SING Y N 2 YL6 SAN C6 SING Y N 3 YL6 SAN CAM SING Y N 4 YL6 OAD PAA DOUB N N 5 YL6 C2 N3 SING Y N 6 YL6 C6 C5 DOUB Y N 7 YL6 CAT CAS DOUB Y N 8 YL6 CAT CAO SING Y N 9 YL6 CAM CAO SING N N 10 YL6 CAM CAL DOUB Y N 11 YL6 N3 C4 DOUB Y N 12 YL6 CAS CAR SING Y N 13 YL6 C5 CAL SING Y N 14 YL6 C5 C4 SING Y N 15 YL6 CAO CAP DOUB Y N 16 YL6 OAE PAA SING N N 17 YL6 CAR CAW SING N N 18 YL6 CAR CAQ DOUB Y N 19 YL6 CAP CAQ SING Y N 20 YL6 C4 NAB SING N N 21 YL6 CAQ CL SING N N 22 YL6 PAA OAU SING N N 23 YL6 PAA CAC SING N N 24 YL6 NAB CAC SING N N 25 YL6 CAC CAV SING N N 26 YL6 CAV CAX SING N N 27 YL6 CBC CAX DOUB Y N 28 YL6 CBC CBB SING Y N 29 YL6 CAX CAY SING Y N 30 YL6 CBB CBA DOUB Y N 31 YL6 CAY CAZ DOUB Y N 32 YL6 CBA CAZ SING Y N 33 YL6 CAZ FBD SING N N 34 YL6 CAP H1 SING N N 35 YL6 CAW H2 SING N N 36 YL6 CAW H3 SING N N 37 YL6 CAW H4 SING N N 38 YL6 CAS H5 SING N N 39 YL6 CAT H6 SING N N 40 YL6 CAL H7 SING N N 41 YL6 C2 H8 SING N N 42 YL6 NAB H9 SING N N 43 YL6 CAC H10 SING N N 44 YL6 OAU H11 SING N N 45 YL6 OAE H12 SING N N 46 YL6 CAV H13 SING N N 47 YL6 CAV H14 SING N N 48 YL6 CAY H15 SING N N 49 YL6 CBA H16 SING N N 50 YL6 CBB H17 SING N N 51 YL6 CBC H18 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YL6 SMILES ACDLabs 12.01 "c1c(Cl)c(C)ccc1c2cc3c(ncnc3s2)NC(Cc4cc(F)ccc4)P(O)(=O)O" YL6 InChI InChI 1.03 "InChI=1S/C21H18ClFN3O3PS/c1-12-5-6-14(9-17(12)22)18-10-16-20(24-11-25-21(16)31-18)26-19(30(27,28)29)8-13-3-2-4-15(23)7-13/h2-7,9-11,19H,8H2,1H3,(H,24,25,26)(H2,27,28,29)/t19-/m1/s1" YL6 InChIKey InChI 1.03 ZSPBSSJYWQDARC-LJQANCHMSA-N YL6 SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(cc1Cl)c2sc3ncnc(N[C@@H](Cc4cccc(F)c4)[P](O)(O)=O)c3c2" YL6 SMILES CACTVS 3.385 "Cc1ccc(cc1Cl)c2sc3ncnc(N[CH](Cc4cccc(F)c4)[P](O)(O)=O)c3c2" YL6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1Cl)c2cc3c(ncnc3s2)N[C@@H](Cc4cccc(c4)F)P(=O)(O)O" YL6 SMILES "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1Cl)c2cc3c(ncnc3s2)NC(Cc4cccc(c4)F)P(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YL6 "SYSTEMATIC NAME" ACDLabs 12.01 "[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid" YL6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(1~{R})-1-[[6-(3-chloranyl-4-methyl-phenyl)thieno[2,3-d]pyrimidin-4-yl]amino]-2-(3-fluorophenyl)ethyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YL6 "Create component" 2016-05-12 RCSB YL6 "Initial release" 2017-03-15 RCSB #