data_YLD # _chem_comp.id YLD _chem_comp.name "(1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 F N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M03 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLD C11 C1 C 0 1 N N S 8.936 19.753 27.802 3.578 0.421 -0.359 C11 YLD 1 YLD C12 C2 C 0 1 N N N 7.761 19.750 26.721 3.691 -0.777 -1.305 C12 YLD 2 YLD C13 C3 C 0 1 N N S 7.647 20.999 25.799 3.997 -2.039 -0.496 C13 YLD 3 YLD C14 C4 C 0 1 N N N 6.597 20.987 24.644 4.109 -3.239 -1.410 C14 YLD 4 YLD C02 C5 C 0 1 N N N 10.800 23.943 25.849 -2.383 0.290 0.770 C02 YLD 5 YLD C04 C6 C 0 1 N N S 12.160 22.148 27.026 0.026 0.007 1.003 C04 YLD 6 YLD C05 C7 C 0 1 N N N 13.230 21.917 28.102 0.187 -1.228 1.891 C05 YLD 7 YLD C06 C8 C 0 1 N N N 14.680 22.305 27.724 -0.936 -1.260 2.929 C06 YLD 8 YLD C07 C9 C 0 1 N N N 15.708 22.140 28.898 -0.849 -2.557 3.735 C07 YLD 9 YLD C08 C10 C 0 1 N N N 15.106 21.533 26.464 -0.795 -0.063 3.871 C08 YLD 10 YLD C09 C11 C 0 1 N N N 10.799 21.557 27.578 1.199 0.106 0.062 C09 YLD 11 YLD C16 C12 C 0 1 N N N 5.708 22.473 26.278 5.899 -3.388 0.062 C16 YLD 12 YLD C17 C13 C 0 1 N N N 7.195 22.208 26.631 5.392 -1.933 0.163 C17 YLD 13 YLD C19 C14 C 0 1 N N R 9.256 18.338 28.341 3.353 1.696 -1.175 C19 YLD 14 YLD C23 C15 C 0 1 N N N 11.445 25.954 24.569 -4.744 0.630 0.704 C23 YLD 15 YLD C24 C16 C 0 1 Y N N 11.461 27.533 24.527 -5.906 0.440 -0.237 C24 YLD 16 YLD C25 C17 C 0 1 Y N N 12.441 28.256 25.194 -6.610 -0.749 -0.233 C25 YLD 17 YLD C26 C18 C 0 1 Y N N 12.472 29.679 25.165 -7.677 -0.924 -1.097 C26 YLD 18 YLD C28 C19 C 0 1 Y N N 11.484 30.397 24.448 -8.039 0.093 -1.964 C28 YLD 19 YLD C29 C20 C 0 1 Y N N 10.484 29.683 23.767 -7.333 1.281 -1.966 C29 YLD 20 YLD C30 C21 C 0 1 Y N N 10.485 28.277 23.813 -6.271 1.457 -1.099 C30 YLD 21 YLD F27 F1 F 0 1 N N N 13.403 30.324 25.800 -8.366 -2.087 -1.095 F27 YLD 22 YLD N03 N1 N 0 1 N N N 11.943 23.558 26.631 -1.213 -0.105 0.229 N03 YLD 23 YLD N10 N2 N 0 1 N N N 10.223 20.329 27.261 2.449 0.219 0.552 N10 YLD 24 YLD N15 N3 N 0 1 N N N 5.500 21.862 24.967 5.185 -3.974 -1.079 N15 YLD 25 YLD O01 O1 O 0 1 N N N 10.034 23.152 25.423 -2.410 0.739 1.898 O01 YLD 26 YLD O18 O2 O 0 1 N N N 6.721 20.348 23.665 3.340 -3.501 -2.310 O18 YLD 27 YLD O20 O3 O 0 1 N N N 10.129 18.443 29.444 4.440 1.877 -2.085 O20 YLD 28 YLD O21 O4 O 0 1 N N N 10.205 22.315 28.363 1.018 0.084 -1.137 O21 YLD 29 YLD O22 O5 O 0 1 N N N 10.604 25.332 25.573 -3.522 0.186 0.059 O22 YLD 30 YLD H1 H1 H 0 1 N N N 8.605 20.373 28.648 4.498 0.516 0.218 H1 YLD 31 YLD H2 H2 H 0 1 N N N 6.810 19.651 27.265 2.750 -0.907 -1.839 H2 YLD 32 YLD H3 H3 H 0 1 N N N 7.907 18.872 26.074 4.493 -0.600 -2.021 H3 YLD 33 YLD H4 H4 H 0 1 N N N 8.638 21.211 25.370 3.229 -2.202 0.259 H4 YLD 34 YLD H5 H5 H 0 1 N N N 12.438 21.567 26.134 -0.015 0.900 1.627 H5 YLD 35 YLD H6 H6 H 0 1 N N N 12.946 22.504 28.988 0.139 -2.126 1.276 H6 YLD 36 YLD H7 H7 H 0 1 N N N 13.225 20.846 28.355 1.151 -1.187 2.399 H7 YLD 37 YLD H8 H8 H 0 1 N N N 14.669 23.373 27.461 -1.900 -1.212 2.422 H8 YLD 38 YLD H9 H9 H 0 1 N N N 15.360 22.708 29.773 0.115 -2.606 4.242 H9 YLD 39 YLD H10 H10 H 0 1 N N N 15.794 21.076 29.163 -1.649 -2.580 4.475 H10 YLD 40 YLD H11 H11 H 0 1 N N N 16.690 22.520 28.581 -0.950 -3.410 3.064 H11 YLD 41 YLD H12 H12 H 0 1 N N N 16.136 21.809 26.195 0.169 -0.112 4.378 H12 YLD 42 YLD H13 H13 H 0 1 N N N 15.055 20.452 26.662 -0.857 0.861 3.297 H13 YLD 43 YLD H14 H14 H 0 1 N N N 14.431 21.786 25.633 -1.595 -0.086 4.611 H14 YLD 44 YLD H15 H15 H 0 1 N N N 5.511 23.554 26.233 6.974 -3.401 -0.119 H15 YLD 45 YLD H16 H16 H 0 1 N N N 5.048 22.011 27.026 5.665 -3.934 0.976 H16 YLD 46 YLD H17 H17 H 0 1 N N N 7.295 21.986 27.704 6.037 -1.255 -0.395 H17 YLD 47 YLD H18 H18 H 0 1 N N N 7.805 23.088 26.380 5.308 -1.621 1.204 H18 YLD 48 YLD S1 S1 S 0 1 N Y N 9.700 17.740 27.573 3.257 3.120 -0.056 S1 YLD 49 YLD H20 H20 H 0 1 N N N 8.302 17.934 28.711 2.422 1.610 -1.734 H20 YLD 50 YLD H21 H21 H 0 1 N N N 11.105 25.599 23.585 -4.655 1.686 0.962 H21 YLD 51 YLD H22 H22 H 0 1 N N N 12.477 25.616 24.744 -4.910 0.047 1.609 H22 YLD 52 YLD H23 H23 H 0 1 N N N 13.200 27.725 25.749 -6.327 -1.542 0.444 H23 YLD 53 YLD H24 H24 H 0 1 N N N 11.499 31.477 24.425 -8.871 -0.043 -2.639 H24 YLD 54 YLD H25 H25 H 0 1 N N N 9.721 30.209 23.213 -7.618 2.077 -2.639 H25 YLD 55 YLD H26 H26 H 0 1 N N N 9.711 27.741 23.283 -5.721 2.386 -1.101 H26 YLD 56 YLD H27 H27 H 0 1 N N N 12.603 24.255 26.913 -1.191 -0.464 -0.671 H27 YLD 57 YLD H28 H28 H 0 1 N N N 10.718 19.765 26.600 2.602 0.166 1.509 H28 YLD 58 YLD H29 H29 H 0 1 N N N 4.709 22.028 24.378 5.455 -4.786 -1.535 H29 YLD 59 YLD H30 H30 H 0 1 N N N 10.326 17.575 29.776 4.551 1.151 -2.714 H30 YLD 60 YLD O1 O6 O 0 1 N Y N ? ? ? 4.373 3.139 0.824 O1 YLD 61 YLD O2 O7 O 0 1 N Y N ? ? ? 2.864 4.286 -0.766 O2 YLD 62 YLD O3 O8 O 0 1 N Y N ? ? ? 2.072 2.814 0.848 O3 YLD 63 YLD H19 H19 H 0 1 N Y N ? ? ? 1.895 3.497 1.510 H19 YLD 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLD O18 C14 DOUB N N 1 YLD C29 C30 DOUB Y N 2 YLD C29 C28 SING Y N 3 YLD C30 C24 SING Y N 4 YLD C28 C26 DOUB Y N 5 YLD C24 C23 SING N N 6 YLD C24 C25 DOUB Y N 7 YLD C23 O22 SING N N 8 YLD C14 N15 SING N N 9 YLD C14 C13 SING N N 10 YLD N15 C16 SING N N 11 YLD C26 C25 SING Y N 12 YLD C26 F27 SING N N 13 YLD O01 C02 DOUB N N 14 YLD O22 C02 SING N N 15 YLD C13 C17 SING N N 16 YLD C13 C12 SING N N 17 YLD C02 N03 SING N N 18 YLD C16 C17 SING N N 19 YLD C08 C06 SING N N 20 YLD N03 C04 SING N N 21 YLD C12 C11 SING N N 22 YLD C04 C09 SING N N 23 YLD C04 C05 SING N N 24 YLD N10 C09 SING N N 25 YLD N10 C11 SING N N 26 YLD C09 O21 DOUB N N 27 YLD C06 C05 SING N N 28 YLD C06 C07 SING N N 29 YLD C11 C19 SING N N 30 YLD C19 O20 SING N N 31 YLD C11 H1 SING N N 32 YLD C12 H2 SING N N 33 YLD C12 H3 SING N N 34 YLD C13 H4 SING N N 35 YLD C04 H5 SING N N 36 YLD C05 H6 SING N N 37 YLD C05 H7 SING N N 38 YLD C06 H8 SING N N 39 YLD C07 H9 SING N N 40 YLD C07 H10 SING N N 41 YLD C07 H11 SING N N 42 YLD C08 H12 SING N N 43 YLD C08 H13 SING N N 44 YLD C08 H14 SING N N 45 YLD C16 H15 SING N N 46 YLD C16 H16 SING N N 47 YLD C17 H17 SING N N 48 YLD C17 H18 SING N N 49 YLD C19 S1 SING N N 50 YLD C19 H20 SING N N 51 YLD C23 H21 SING N N 52 YLD C23 H22 SING N N 53 YLD C25 H23 SING N N 54 YLD C28 H24 SING N N 55 YLD C29 H25 SING N N 56 YLD C30 H26 SING N N 57 YLD N03 H27 SING N N 58 YLD N10 H28 SING N N 59 YLD N15 H29 SING N N 60 YLD O20 H30 SING N N 61 YLD S1 O1 DOUB N N 62 YLD S1 O2 DOUB N N 63 YLD S1 O3 SING N N 64 YLD O3 H19 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLD SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCc1cccc(F)c1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YLD InChI InChI 1.03 "InChI=1S/C21H30FN3O8S/c1-12(2)8-16(25-21(29)33-11-13-4-3-5-15(22)9-13)19(27)24-17(20(28)34(30,31)32)10-14-6-7-23-18(14)26/h3-5,9,12,14,16-17,20,28H,6-8,10-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20+/m0/s1" YLD InChIKey InChI 1.03 LNGFVEUFXDACOC-JWWIWJDOSA-N YLD SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1cccc(F)c1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O" YLD SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1cccc(F)c1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YLD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F" YLD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YLD "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-[(N-{[(3-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YLD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(3-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLD "Create component" 2021-03-12 RCSB YLD "Initial release" 2021-03-24 RCSB ##