data_YLH # _chem_comp.id YLH _chem_comp.name "7-[(1~{S})-1-[5-(3-azanylpropyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H28 F N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 517.570 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PG2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLH C01 C1 C 0 1 N N N N N N -22.753 -12.465 15.778 -5.010 -3.427 0.354 C01 YLH 1 YLH C02 C2 C 0 1 N N S N N N -23.441 -12.000 14.465 -4.078 -2.267 0.710 C02 YLH 2 YLH C03 C3 C 0 1 Y N N N N N -22.867 -12.820 13.274 -2.769 -2.433 -0.019 C03 YLH 3 YLH C04 C4 C 0 1 Y N N N N N -22.534 -12.131 12.073 -1.649 -1.709 0.385 C04 YLH 4 YLH C06 C5 C 0 1 Y N N N N N -22.324 -10.601 10.520 -0.131 -0.358 1.369 C06 YLH 5 YLH C07 C6 C 0 1 N N N N N N -22.605 -9.288 9.928 0.455 0.621 2.288 C07 YLH 6 YLH C10 C7 C 0 1 Y N N N N N -21.889 -11.773 9.956 0.542 -1.000 0.344 C10 YLH 7 YLH C11 C8 C 0 1 Y N N N N N -21.288 -11.924 8.591 1.965 -0.831 -0.024 C11 YLH 8 YLH C12 C9 C 0 1 Y N N N N N -20.391 -10.972 8.090 2.969 -1.218 0.864 C12 YLH 9 YLH C13 C10 C 0 1 Y N N N N N -19.830 -11.097 6.843 4.296 -1.058 0.513 C13 YLH 10 YLH C15 C11 C 0 1 Y N N N N N -20.099 -12.182 6.048 4.629 -0.513 -0.717 C15 YLH 11 YLH C16 C12 C 0 1 N N N N N N -19.458 -12.292 4.641 6.078 -0.335 -1.092 C16 YLH 12 YLH C18 C13 C 0 1 N N N N N N -20.793 -9.867 3.696 8.377 1.294 -1.090 C18 YLH 13 YLH C21 C14 C 0 1 Y N N N N N -20.992 -13.087 6.553 3.637 -0.127 -1.600 C21 YLH 14 YLH C22 C15 C 0 1 Y N N N N N -21.563 -13.023 7.808 2.308 -0.288 -1.263 C22 YLH 15 YLH C23 C16 C 0 1 Y N N N N N -21.980 -12.752 10.950 -0.434 -1.883 -0.305 C23 YLH 16 YLH C24 C17 C 0 1 Y N N N N N -21.714 -14.122 10.995 -0.363 -2.772 -1.380 C24 YLH 17 YLH C25 C18 C 0 1 Y N N N N N -22.075 -14.819 12.140 -1.475 -3.471 -1.757 C25 YLH 18 YLH C26 C19 C 0 1 Y N N N N N -22.621 -14.188 13.290 -2.676 -3.304 -1.081 C26 YLH 19 YLH C28 C20 C 0 1 N N N N N N -25.611 -13.167 15.207 -5.037 0.106 1.221 C28 YLH 20 YLH C29 C21 C 0 1 N N N N N N -26.927 -12.922 14.828 -5.659 1.168 0.294 C29 YLH 21 YLH C30 C22 C 0 1 N N N N N N -28.177 -13.630 15.289 -4.832 2.455 0.322 C30 YLH 22 YLH C31 C23 C 0 1 N N N N N N -29.123 -12.650 15.924 -5.536 3.532 -0.506 C31 YLH 23 YLH C32 C24 C 0 1 N N N N N N -30.459 -13.399 16.149 -4.710 4.819 -0.478 C32 YLH 24 YLH C35 C25 C 0 1 N N N N N N -25.669 -11.445 13.684 -5.054 -0.664 -0.933 C35 YLH 25 YLH F14 F1 F 0 1 N N N N N N -19.060 -10.060 6.394 5.270 -1.432 1.371 F14 YLH 26 YLH N05 N1 N 0 1 Y N N N N N -22.679 -10.809 11.797 -1.441 -0.789 1.385 N05 YLH 27 YLH N27 N2 N 0 1 N N N N N N -24.873 -12.176 14.507 -4.700 -1.001 0.314 N27 YLH 28 YLH N33 N3 N 0 1 N N N N N N -31.392 -12.481 16.785 -5.385 5.853 -1.273 N33 YLH 29 YLH O08 O1 O 0 1 N N N N N N -23.036 -9.303 8.706 1.627 0.929 2.183 O08 YLH 30 YLH O09 O2 O 0 1 N N N N N N -22.563 -8.241 10.630 -0.306 1.181 3.252 O09 YLH 31 YLH O19 O3 O 0 1 N N N N N N -21.856 -12.319 3.483 5.944 2.292 -1.281 O19 YLH 32 YLH O20 O4 O 0 1 N N N N N N -19.917 -11.646 2.079 6.619 1.337 0.874 O20 YLH 33 YLH O34 O5 O 0 1 N N N N N N -26.977 -11.859 13.910 -5.607 0.557 -1.028 O34 YLH 34 YLH O36 O6 O 0 1 N N N N N N -25.391 -10.533 12.968 -4.890 -1.393 -1.891 O36 YLH 35 YLH S17 S1 S 0 1 N N N N N N -20.570 -11.606 3.377 6.647 1.299 -0.546 S17 YLH 36 YLH H012 H1 H 0 0 N N N N N N -23.153 -11.890 16.626 -5.190 -3.431 -0.721 H012 YLH 37 YLH H011 H2 H 0 0 N N N N N N -22.950 -13.536 15.936 -4.547 -4.369 0.648 H011 YLH 38 YLH H013 H3 H 0 0 N N N N N N -21.668 -12.299 15.702 -5.957 -3.307 0.880 H013 YLH 39 YLH H021 H4 H 0 0 N N N N N N -23.200 -10.939 14.304 -3.897 -2.263 1.785 H021 YLH 40 YLH H121 H5 H 0 0 N N N N N N -20.134 -10.118 8.700 2.710 -1.642 1.823 H121 YLH 41 YLH H162 H6 H 0 0 N N N N N N -19.262 -13.350 4.414 6.675 -1.108 -0.609 H162 YLH 42 YLH H161 H7 H 0 0 N N N N N N -18.510 -11.733 4.631 6.186 -0.415 -2.173 H161 YLH 43 YLH H181 H8 H 0 0 N N N N N N -21.287 -9.733 4.670 8.908 0.473 -0.607 H181 YLH 44 YLH H183 H9 H 0 0 N N N N N N -19.813 -9.368 3.710 8.418 1.166 -2.172 H183 YLH 45 YLH H182 H10 H 0 0 N N N N N N -21.417 -9.426 2.905 8.846 2.239 -0.818 H182 YLH 46 YLH H211 H11 H 0 0 N N N N N N -21.272 -13.916 5.920 3.902 0.297 -2.557 H211 YLH 47 YLH H221 H12 H 0 0 N N N N N N -22.207 -13.812 8.166 1.535 0.014 -1.954 H221 YLH 48 YLH H241 H13 H 0 0 N N N N N N -21.242 -14.624 10.164 0.567 -2.907 -1.911 H241 YLH 49 YLH H251 H14 H 0 0 N N N N N N -21.934 -15.890 12.157 -1.419 -4.158 -2.589 H251 YLH 50 YLH H261 H15 H 0 0 N N N N N N -22.844 -14.769 14.173 -3.545 -3.867 -1.388 H261 YLH 51 YLH H281 H16 H 0 0 N N N N N N -25.297 -14.177 14.905 -4.139 0.495 1.701 H281 YLH 52 YLH H1 H17 H 0 1 N N N N N N -25.488 -13.054 16.294 -5.760 -0.219 1.970 H1 YLH 53 YLH H2 H18 H 0 1 N N N N N N -26.824 -13.637 13.999 -6.690 1.371 0.583 H2 YLH 54 YLH H301 H19 H 0 0 N N N N N N -28.668 -14.101 14.425 -4.729 2.798 1.352 H301 YLH 55 YLH H302 H20 H 0 0 N N N N N N -27.907 -14.403 16.024 -3.845 2.262 -0.097 H302 YLH 56 YLH H312 H21 H 0 0 N N N N N N -28.718 -12.301 16.885 -5.639 3.189 -1.536 H312 YLH 57 YLH H311 H22 H 0 0 N N N N N N -29.279 -11.789 15.258 -6.524 3.725 -0.087 H311 YLH 58 YLH H322 H23 H 0 0 N N N N N N -30.866 -13.734 15.183 -4.607 5.162 0.552 H322 YLH 59 YLH H321 H24 H 0 0 N N N N N N -30.293 -14.271 16.799 -3.722 4.626 -0.897 H321 YLH 60 YLH H051 H25 H 0 0 N N N N N N -22.997 -10.109 12.437 -2.118 -0.487 2.011 H051 YLH 61 YLH H332 H26 H 0 0 N N N N N N -32.264 -12.945 16.940 -6.327 6.004 -0.944 H332 YLH 62 YLH H331 H27 H 0 0 N N N N N N -31.016 -12.177 17.660 -4.859 6.713 -1.270 H331 YLH 63 YLH H4 H29 H 0 1 N N N N N N -22.888 -7.506 10.123 0.167 1.814 3.809 H4 YLH 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLH O20 S17 DOUB N N 1 YLH S17 O19 DOUB N N 2 YLH S17 C18 SING N N 3 YLH S17 C16 SING N N 4 YLH C16 C15 SING N N 5 YLH C15 C21 DOUB Y N 6 YLH C15 C13 SING Y N 7 YLH F14 C13 SING N N 8 YLH C21 C22 SING Y N 9 YLH C13 C12 DOUB Y N 10 YLH C22 C11 DOUB Y N 11 YLH C12 C11 SING Y N 12 YLH C11 C10 SING N N 13 YLH O08 C07 DOUB N N 14 YLH C07 C06 SING N N 15 YLH C07 O09 SING N N 16 YLH C10 C06 DOUB Y N 17 YLH C10 C23 SING Y N 18 YLH C06 N05 SING Y N 19 YLH C23 C24 DOUB Y N 20 YLH C23 C04 SING Y N 21 YLH C24 C25 SING Y N 22 YLH N05 C04 SING Y N 23 YLH C04 C03 DOUB Y N 24 YLH C25 C26 DOUB Y N 25 YLH O36 C35 DOUB N N 26 YLH C03 C26 SING Y N 27 YLH C03 C02 SING N N 28 YLH C35 O34 SING N N 29 YLH C35 N27 SING N N 30 YLH O34 C29 SING N N 31 YLH C02 N27 SING N N 32 YLH C02 C01 SING N N 33 YLH N27 C28 SING N N 34 YLH C29 C28 SING N N 35 YLH C29 C30 SING N N 36 YLH C30 C31 SING N N 37 YLH C31 C32 SING N N 38 YLH C32 N33 SING N N 39 YLH C01 H012 SING N N 40 YLH C01 H011 SING N N 41 YLH C01 H013 SING N N 42 YLH C02 H021 SING N N 43 YLH C12 H121 SING N N 44 YLH C16 H162 SING N N 45 YLH C16 H161 SING N N 46 YLH C18 H181 SING N N 47 YLH C18 H183 SING N N 48 YLH C18 H182 SING N N 49 YLH C21 H211 SING N N 50 YLH C22 H221 SING N N 51 YLH C24 H241 SING N N 52 YLH C25 H251 SING N N 53 YLH C26 H261 SING N N 54 YLH C28 H281 SING N N 55 YLH C28 H1 SING N N 56 YLH C29 H2 SING N N 57 YLH C30 H301 SING N N 58 YLH C30 H302 SING N N 59 YLH C31 H312 SING N N 60 YLH C31 H311 SING N N 61 YLH C32 H322 SING N N 62 YLH C32 H321 SING N N 63 YLH N05 H051 SING N N 64 YLH N33 H332 SING N N 65 YLH N33 H331 SING N N 66 YLH O09 H4 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLH InChI InChI 1.06 "InChI=1S/C25H28FN3O6S/c1-14(29-12-17(5-4-10-27)35-25(29)32)18-6-3-7-19-21(23(24(30)31)28-22(18)19)15-8-9-16(20(26)11-15)13-36(2,33)34/h3,6-9,11,14,17,28H,4-5,10,12-13,27H2,1-2H3,(H,30,31)/t14-,17?/m0/s1" YLH InChIKey InChI 1.06 QAHBWVAOQZLFQE-MBIQTGHCSA-N YLH SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@@H](CCCN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YLH SMILES CACTVS 3.385 "C[CH](N1C[CH](CCCN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YLH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CCCN" YLH SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CCCN" # _pdbx_chem_comp_identifier.comp_id YLH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[5-(3-azanylpropyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLH "Create component" 2023-06-20 PDBE YLH "Initial release" 2024-07-10 RCSB #