data_YLJ # _chem_comp.id YLJ _chem_comp.name "(1S,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 F N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M03 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLJ C11 C1 C 0 1 N N S N N N 8.945 19.789 27.756 3.250 -0.023 -1.457 C11 YLJ 1 YLJ C16 C2 C 0 1 N N N N N N 5.625 22.640 26.202 5.446 3.158 0.865 C16 YLJ 2 YLJ C17 C3 C 0 1 N N N N N N 7.007 22.190 26.768 5.521 3.016 -0.671 C17 YLJ 3 YLJ O18 O1 O 0 1 N N N N N N 6.704 20.402 23.704 2.113 2.364 0.195 O18 YLJ 4 YLJ C23 C4 C 0 1 N N N N N N 11.447 25.957 24.568 -4.851 0.933 0.581 C23 YLJ 5 YLJ C24 C5 C 0 1 Y N N N N N 11.462 27.536 24.527 -6.133 0.668 -0.165 C24 YLJ 6 YLJ C29 C6 C 0 1 Y N N N N N 10.485 29.685 23.768 -7.748 1.320 -1.809 C29 YLJ 7 YLJ C28 C7 C 0 1 Y N N N N N 11.485 30.400 24.449 -8.488 0.185 -1.535 C28 YLJ 8 YLJ C26 C8 C 0 1 Y N N N N N 12.473 29.681 25.166 -8.053 -0.707 -0.569 C26 YLJ 9 YLJ C25 C9 C 0 1 Y N N N N N 12.442 28.258 25.195 -6.874 -0.464 0.116 C25 YLJ 10 YLJ C02 C10 C 0 1 N N N N N N 10.814 23.948 25.854 -2.516 0.470 0.404 C02 YLJ 11 YLJ C04 C11 C 0 1 N N S N N N 12.184 22.156 27.025 -0.109 0.089 0.376 C04 YLJ 12 YLJ C05 C12 C 0 1 N N N N N N 13.241 21.929 28.114 0.122 -1.004 1.421 C05 YLJ 13 YLJ C06 C13 C 0 1 N N N N N N 14.695 22.306 27.741 -0.855 -0.813 2.583 C06 YLJ 14 YLJ C07 C14 C 0 1 N N N N N N 15.722 22.120 28.913 -0.709 -1.975 3.568 C07 YLJ 15 YLJ C08 C15 C 0 1 N N N N N N 15.113 21.543 26.474 -0.545 0.503 3.299 C08 YLJ 16 YLJ C09 C16 C 0 1 N N N N N N 10.820 21.569 27.559 0.931 -0.025 -0.709 C09 YLJ 17 YLJ C12 C17 C 0 1 N N N N N N 7.781 19.786 26.661 4.515 0.725 -1.030 C12 YLJ 18 YLJ C13 C18 C 0 1 N N S N N N 7.568 21.098 25.844 4.227 2.227 -0.978 C13 YLJ 19 YLJ C14 C19 C 0 1 N N N N N N 6.557 21.075 24.658 3.311 2.550 0.183 C14 YLJ 20 YLJ C19 C20 C 0 1 N N S N N N 9.220 18.372 28.306 3.583 -1.497 -1.691 C19 YLJ 21 YLJ C30 C21 C 0 1 Y N N N N N 10.486 28.280 23.814 -6.571 1.561 -1.125 C30 YLJ 22 YLJ F27 F1 F 0 1 N N N N N N 13.404 30.326 25.801 -8.775 -1.816 -0.300 F27 YLJ 23 YLJ N03 N1 N 0 1 N N N N N N 11.967 23.564 26.625 -1.444 -0.069 -0.209 N03 YLJ 24 YLJ N10 N2 N 0 1 N N N N N N 10.239 20.348 27.229 2.239 0.088 -0.403 N10 YLJ 25 YLJ N15 N3 N 0 1 N N N N N N 5.470 21.985 24.905 4.019 3.074 1.198 N15 YLJ 26 YLJ O01 O2 O 0 1 N N N N N N 10.044 23.157 25.436 -2.376 1.087 1.441 O01 YLJ 27 YLJ O20 O3 O 0 1 N N N N N N 7.999 17.756 28.634 4.569 -1.605 -2.720 O20 YLJ 28 YLJ O21 O4 O 0 1 N N N N N N 10.221 22.327 28.341 0.591 -0.219 -1.857 O21 YLJ 29 YLJ O22 O5 O 0 1 N N N N N N 10.616 25.336 25.579 -3.742 0.325 -0.134 O22 YLJ 30 YLJ H1 H1 H 0 1 N N N N N N 8.608 20.419 28.592 2.864 0.413 -2.378 H1 YLJ 31 YLJ H2 H2 H 0 1 N N N N N N 5.603 23.733 26.080 5.994 2.347 1.346 H2 YLJ 32 YLJ H3 H3 H 0 1 N N N N N N 6.881 21.790 27.785 5.505 3.993 -1.154 H3 YLJ 33 YLJ H4 H4 H 0 1 N N N N N N 7.696 23.047 26.794 6.403 2.449 -0.968 H4 YLJ 34 YLJ H5 H5 H 0 1 N N N N N N 11.098 25.602 23.587 -4.689 2.008 0.656 H5 YLJ 35 YLJ H6 H6 H 0 1 N N N N N N 12.481 25.619 24.734 -4.917 0.504 1.581 H6 YLJ 36 YLJ H7 H7 H 0 1 N N N N N N 9.722 30.211 23.214 -8.089 2.019 -2.559 H7 YLJ 37 YLJ H8 H8 H 0 1 N N N N N N 11.500 31.480 24.426 -9.407 -0.003 -2.069 H8 YLJ 38 YLJ H9 H9 H 0 1 N N N N N N 13.200 27.726 25.751 -6.534 -1.160 0.869 H9 YLJ 39 YLJ H10 H10 H 0 1 N N N N N N 12.474 21.574 26.138 -0.034 1.067 0.850 H10 YLJ 40 YLJ H11 H11 H 0 1 N N N N N N 12.953 22.527 28.991 -0.041 -1.982 0.967 H11 YLJ 41 YLJ H12 H12 H 0 1 N N N N N N 13.228 20.861 28.378 1.145 -0.942 1.792 H12 YLJ 42 YLJ H13 H13 H 0 1 N N N N N N 14.694 23.377 27.488 -1.875 -0.787 2.200 H13 YLJ 43 YLJ H14 H14 H 0 1 N N N N N N 15.380 22.683 29.794 0.311 -2.001 3.951 H14 YLJ 44 YLJ H15 H15 H 0 1 N N N N N N 15.799 21.053 29.167 -1.405 -1.839 4.396 H15 YLJ 45 YLJ H16 H16 H 0 1 N N N N N N 16.708 22.494 28.599 -0.930 -2.913 3.058 H16 YLJ 46 YLJ H17 H17 H 0 1 N N N N N N 16.146 21.811 26.208 0.475 0.477 3.682 H17 YLJ 47 YLJ H18 H18 H 0 1 N N N N N N 15.051 20.461 26.661 -0.648 1.331 2.597 H18 YLJ 48 YLJ H19 H19 H 0 1 N N N N N N 14.441 21.811 25.646 -1.240 0.640 4.127 H19 YLJ 49 YLJ H20 H20 H 0 1 N N N N N N 6.838 19.563 27.181 4.826 0.380 -0.044 H20 YLJ 50 YLJ H21 H21 H 0 1 N N N N N N 8.003 18.982 25.944 5.311 0.533 -1.750 H21 YLJ 51 YLJ H22 H22 H 0 1 N N N N N N 8.544 21.429 25.461 3.788 2.563 -1.917 H22 YLJ 52 YLJ H23 H23 H 0 1 N N N N N N 9.797 18.504 29.233 2.682 -2.030 -1.993 H23 YLJ 53 YLJ S1 S1 S 0 1 N Y N N N N 9.719 17.792 27.558 4.228 -2.222 -0.158 S1 YLJ 54 YLJ H25 H25 H 0 1 N N N N N N 9.712 27.744 23.285 -5.994 2.448 -1.341 H25 YLJ 55 YLJ H26 H26 H 0 1 N N N N N N 12.632 24.260 26.895 -1.555 -0.562 -1.037 H26 YLJ 56 YLJ H27 H27 H 0 1 N N N N N N 10.735 19.781 26.571 2.510 0.243 0.516 H27 YLJ 57 YLJ H28 H28 H 0 1 N N N N N N 8.165 16.884 28.973 4.292 -1.237 -3.570 H28 YLJ 58 YLJ O1 O6 O 0 1 N Y N N N N ? ? ? 4.235 -3.640 -0.241 O1 YLJ 59 YLJ O2 O7 O 0 1 N Y N N N N ? ? ? 5.374 -1.509 0.288 O2 YLJ 60 YLJ O3 O8 O 0 1 N Y N N N N ? ? ? 3.164 -1.912 0.886 O3 YLJ 61 YLJ H24 H24 H 0 1 N N N N N N 4.818 22.331 26.882 5.851 4.121 1.175 H24 YLJ 62 YLJ H29 H29 H 0 1 N N N N N N 4.711 22.147 24.274 3.636 3.361 2.042 H29 YLJ 63 YLJ H30 H30 H 0 1 N Y N N N N ? ? ? 3.372 -2.243 1.770 H30 YLJ 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLJ O18 C14 DOUB N N 1 YLJ C29 C30 DOUB Y N 2 YLJ C29 C28 SING Y N 3 YLJ C30 C24 SING Y N 4 YLJ C28 C26 DOUB Y N 5 YLJ C24 C23 SING N N 6 YLJ C24 C25 DOUB Y N 7 YLJ C23 O22 SING N N 8 YLJ C14 N15 SING N N 9 YLJ C14 C13 SING N N 10 YLJ N15 C16 SING N N 11 YLJ C26 C25 SING Y N 12 YLJ C26 F27 SING N N 13 YLJ O01 C02 DOUB N N 14 YLJ O22 C02 SING N N 15 YLJ C13 C12 SING N N 16 YLJ C13 C17 SING N N 17 YLJ C02 N03 SING N N 18 YLJ C16 C17 SING N N 19 YLJ C08 C06 SING N N 20 YLJ N03 C04 SING N N 21 YLJ C12 C11 SING N N 22 YLJ C04 C09 SING N N 23 YLJ C04 C05 SING N N 24 YLJ N10 C09 SING N N 25 YLJ N10 C11 SING N N 26 YLJ C09 O21 DOUB N N 27 YLJ C06 C05 SING N N 28 YLJ C06 C07 SING N N 29 YLJ C11 C19 SING N N 30 YLJ C19 O20 SING N N 31 YLJ C11 H1 SING N N 32 YLJ C16 H2 SING N N 33 YLJ C17 H3 SING N N 34 YLJ C17 H4 SING N N 35 YLJ C23 H5 SING N N 36 YLJ C23 H6 SING N N 37 YLJ C29 H7 SING N N 38 YLJ C28 H8 SING N N 39 YLJ C25 H9 SING N N 40 YLJ C04 H10 SING N N 41 YLJ C05 H11 SING N N 42 YLJ C05 H12 SING N N 43 YLJ C06 H13 SING N N 44 YLJ C07 H14 SING N N 45 YLJ C07 H15 SING N N 46 YLJ C07 H16 SING N N 47 YLJ C08 H17 SING N N 48 YLJ C08 H18 SING N N 49 YLJ C08 H19 SING N N 50 YLJ C12 H20 SING N N 51 YLJ C12 H21 SING N N 52 YLJ C13 H22 SING N N 53 YLJ C19 H23 SING N N 54 YLJ C19 S1 SING N N 55 YLJ C30 H25 SING N N 56 YLJ N03 H26 SING N N 57 YLJ N10 H27 SING N N 58 YLJ O20 H28 SING N N 59 YLJ S1 O1 DOUB N N 60 YLJ S1 O2 DOUB N N 61 YLJ S1 O3 SING N N 62 YLJ C16 H24 SING N N 63 YLJ N15 H29 SING N N 64 YLJ O3 H30 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLJ SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCc1cccc(F)c1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YLJ InChI InChI 1.03 "InChI=1S/C21H30FN3O8S/c1-12(2)8-16(25-21(29)33-11-13-4-3-5-15(22)9-13)19(27)24-17(20(28)34(30,31)32)10-14-6-7-23-18(14)26/h3-5,9,12,14,16-17,20,28H,6-8,10-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20-/m0/s1" YLJ InChIKey InChI 1.03 LNGFVEUFXDACOC-VERUCKTNSA-N YLJ SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1cccc(F)c1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O" YLJ SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1cccc(F)c1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YLJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F" YLJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YLJ "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[(3-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YLJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(3-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLJ "Create component" 2021-03-12 RCSB YLJ "Initial release" 2021-03-24 RCSB YLJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YLJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #