data_YLK # _chem_comp.id YLK _chem_comp.name "(1'S,3aS,5R,16R,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-16,17-dimethyl-2,3,3',3a,4',16,17,18,21,21a-decahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-etheno-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalene]-13,15,15(4H,14H)-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H40 Cl F N2 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-09 _chem_comp.pdbx_modified_date 2023-05-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 647.197 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G3T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLK C1 C1 C 0 1 N N N 11.864 59.612 -9.511 -0.584 5.583 -0.978 C1 YLK 1 YLK C3 C2 C 0 1 N N R 11.996 59.121 -7.104 -1.308 3.828 0.482 C3 YLK 2 YLK C5 C3 C 0 1 N N N 13.337 59.796 -6.845 -2.653 3.379 -0.026 C5 YLK 3 YLK C7 C4 C 0 1 N N N 14.470 59.154 -7.068 -3.481 2.716 0.746 C7 YLK 4 YLK C8 C5 C 0 1 N N N 15.835 59.788 -6.837 -4.836 2.292 0.242 C8 YLK 5 YLK C11 C6 C 0 1 N N N 17.997 59.399 -5.566 -4.937 1.351 -2.067 C11 YLK 6 YLK C12 C7 C 0 1 N N R 17.366 57.784 -7.500 -5.793 0.014 -0.140 C12 YLK 7 YLK C19 C8 C 0 1 N N N 15.612 55.365 -5.986 -3.188 -2.971 -0.098 C19 YLK 8 YLK O20 O1 O 0 1 N N N 15.120 55.472 -7.107 -3.839 -3.998 -0.137 O20 YLK 9 YLK C21 C9 C 0 1 Y N N 14.754 54.972 -4.865 -1.769 -2.991 0.320 C21 YLK 10 YLK C23 C10 C 0 1 Y N N 14.297 53.712 -2.880 0.191 -4.165 1.031 C23 YLK 11 YLK C24 C11 C 0 1 Y N N 13.091 54.401 -2.719 0.879 -2.959 1.142 C24 YLK 12 YLK O25 O2 O 0 1 N N N 12.366 54.017 -1.639 2.172 -3.010 1.555 O25 YLK 13 YLK C27 C12 C 0 1 N N S 10.106 54.972 -1.600 3.300 -1.121 0.624 C27 YLK 14 YLK C30 C13 C 0 1 N N N 7.279 55.405 -0.576 5.652 0.285 1.834 C30 YLK 15 YLK C31 C14 C 0 1 Y N N 8.486 55.413 0.326 5.623 -0.124 0.384 C31 YLK 16 YLK C32 C15 C 0 1 Y N N 8.234 55.626 1.681 6.733 0.162 -0.396 C32 YLK 17 YLK C33 C16 C 0 1 Y N N 9.277 55.644 2.592 6.755 -0.189 -1.731 C33 YLK 18 YLK C35 C17 C 0 1 Y N N 10.576 55.447 2.175 5.661 -0.826 -2.287 C35 YLK 19 YLK C36 C18 C 0 1 Y N N 10.836 55.230 0.837 4.559 -1.110 -1.508 C36 YLK 20 YLK C37 C19 C 0 1 Y N N 9.796 55.203 -0.127 4.532 -0.763 -0.161 C37 YLK 21 YLK C38 C20 C 0 1 N N N 10.815 56.226 -2.131 2.054 -0.532 -0.033 C38 YLK 22 YLK C40 C21 C 0 1 N N N 10.915 56.995 -4.496 -0.069 0.482 0.431 C40 YLK 23 YLK O2 O3 O 0 1 N N N 11.352 59.807 -8.181 -0.479 4.204 -0.617 O2 YLK 24 YLK F6 F1 F 0 1 N N N 13.346 61.070 -6.407 -3.013 3.676 -1.297 F6 YLK 25 YLK C9 C22 C 0 1 N N S 16.882 58.746 -6.399 -4.724 1.012 -0.589 C9 YLK 26 YLK C14 C23 C 0 1 N N N 18.394 58.384 -8.482 -7.146 0.415 -0.736 C14 YLK 27 YLK S15 S1 S 0 1 N N N 17.966 56.192 -6.863 -5.365 -1.659 -0.700 S15 YLK 28 YLK O16 O4 O 0 1 N N N 17.947 55.184 -7.870 -5.935 -2.630 0.171 O16 YLK 29 YLK O17 O5 O 0 1 N N N 19.151 56.368 -6.083 -5.511 -1.775 -2.109 O17 YLK 30 YLK N18 N1 N 0 1 N N N 16.904 55.674 -5.725 -3.734 -1.778 -0.438 N18 YLK 31 YLK C22 C24 C 0 1 Y N N 15.144 53.980 -3.934 -1.126 -4.189 0.627 C22 YLK 32 YLK C26 C25 C 0 1 N N N 10.974 53.704 -1.796 3.160 -2.662 0.579 C26 YLK 33 YLK C28 C26 C 0 1 N N N 8.815 54.766 -2.445 3.394 -0.729 2.091 C28 YLK 34 YLK C29 C27 C 0 1 N N N 7.636 55.672 -2.035 4.220 0.532 2.304 C29 YLK 35 YLK CL34 CL1 CL 0 0 N N N 9.001 55.920 4.256 8.149 0.167 -2.704 CL34 YLK 36 YLK N39 N2 N 0 1 N N N 11.466 56.144 -3.423 0.927 -0.499 0.941 N39 YLK 37 YLK C41 C28 C 0 1 N N S 11.508 58.385 -4.650 0.382 1.929 0.528 C41 YLK 38 YLK C43 C29 C 0 1 N N N 11.320 59.348 -3.477 1.701 2.080 1.309 C43 YLK 39 YLK C44 C30 C 0 1 N N N 11.198 60.724 -4.128 1.439 3.270 2.250 C44 YLK 40 YLK O45 O6 O 0 1 N N N 10.837 60.526 -5.489 0.025 3.353 2.440 O45 YLK 41 YLK C46 C31 C 0 1 N N R 11.032 59.171 -5.891 -0.647 2.749 1.324 C46 YLK 42 YLK C48 C32 C 0 1 Y N N 12.668 55.413 -3.640 0.253 -1.759 0.830 C48 YLK 43 YLK C49 C33 C 0 1 Y N N 13.562 55.668 -4.681 -1.062 -1.782 0.403 C49 YLK 44 YLK H1 H1 H 0 1 N N N 11.268 60.201 -10.224 0.076 5.789 -1.821 H1 YLK 45 YLK H2 H2 H 0 1 N N N 12.913 59.940 -9.552 -1.612 5.808 -1.259 H2 YLK 46 YLK H3 H3 H 0 1 N N N 11.802 58.546 -9.775 -0.294 6.204 -0.130 H3 YLK 47 YLK H4 H4 H 0 1 N N N 12.170 58.068 -7.372 -1.461 4.716 1.113 H4 YLK 48 YLK H5 H5 H 0 1 N N N 14.426 58.137 -7.429 -3.194 2.472 1.760 H5 YLK 49 YLK H6 H6 H 0 1 N N N 16.171 60.260 -7.772 -5.492 2.113 1.095 H6 YLK 50 YLK H7 H7 H 0 1 N N N 15.744 60.553 -6.052 -5.257 3.087 -0.374 H7 YLK 51 YLK H8 H8 H 0 1 N N N 17.551 60.064 -4.812 -4.178 2.064 -2.389 H8 YLK 52 YLK H9 H9 H 0 1 N N N 18.585 58.617 -5.063 -4.859 0.442 -2.663 H9 YLK 53 YLK H10 H10 H 0 1 N N N 18.654 59.984 -6.227 -5.926 1.789 -2.201 H10 YLK 54 YLK H11 H11 H 0 1 N N N 16.481 57.517 -8.096 -5.865 0.023 0.949 H11 YLK 55 YLK H12 H12 H 0 1 N N N 14.571 52.953 -2.162 0.695 -5.090 1.265 H12 YLK 56 YLK H13 H13 H 0 1 N N N 6.580 56.183 -0.236 6.096 -0.510 2.428 H13 YLK 57 YLK H14 H14 H 0 1 N N N 6.794 54.420 -0.506 6.231 1.199 1.943 H14 YLK 58 YLK H15 H15 H 0 1 N N N 7.220 55.778 2.022 7.585 0.661 0.042 H15 YLK 59 YLK H16 H16 H 0 1 N N N 11.385 55.462 2.890 5.670 -1.102 -3.332 H16 YLK 60 YLK H17 H17 H 0 1 N N N 11.856 55.077 0.516 3.709 -1.608 -1.949 H17 YLK 61 YLK H18 H18 H 0 1 N N N 11.583 56.504 -1.395 2.256 0.479 -0.373 H18 YLK 62 YLK H19 H19 H 0 1 N N N 10.062 57.025 -2.194 1.755 -1.153 -0.877 H19 YLK 63 YLK H20 H20 H 0 1 N N N 9.838 57.113 -4.305 -0.287 0.249 -0.608 H20 YLK 64 YLK H21 H21 H 0 1 N N N 11.062 56.465 -5.448 -0.974 0.381 1.035 H21 YLK 65 YLK H22 H22 H 0 1 N N N 16.347 58.101 -5.686 -3.732 0.590 -0.451 H22 YLK 66 YLK H23 H23 H 0 1 N N N 18.021 59.347 -8.861 -7.911 -0.287 -0.406 H23 YLK 67 YLK H24 H24 H 0 1 N N N 19.350 58.541 -7.961 -7.406 1.420 -0.403 H24 YLK 68 YLK H25 H25 H 0 1 N N N 18.544 57.692 -9.324 -7.082 0.399 -1.824 H25 YLK 69 YLK H26 H26 H 0 1 N N N 17.230 55.581 -4.784 -3.164 -1.001 -0.546 H26 YLK 70 YLK H27 H27 H 0 1 N N N 16.078 53.449 -4.046 -1.654 -5.128 0.549 H27 YLK 71 YLK H28 H28 H 0 1 N N N 10.805 53.303 -2.806 4.113 -3.123 0.830 H28 YLK 72 YLK H29 H29 H 0 1 N N N 10.686 52.950 -1.049 2.835 -2.972 -0.411 H29 YLK 73 YLK H30 H30 H 0 1 N N N 8.497 53.718 -2.339 2.392 -0.578 2.496 H30 YLK 74 YLK H31 H31 H 0 1 N N N 9.057 54.971 -3.498 3.861 -1.552 2.645 H31 YLK 75 YLK H32 H32 H 0 1 N N N 7.924 56.727 -2.156 4.227 0.791 3.363 H32 YLK 76 YLK H33 H33 H 0 1 N N N 6.766 55.454 -2.672 3.799 1.357 1.731 H33 YLK 77 YLK H34 H34 H 0 1 N N N 12.593 58.250 -4.770 0.512 2.340 -0.477 H34 YLK 78 YLK H35 H35 H 0 1 N N N 10.408 59.102 -2.914 1.902 1.184 1.892 H35 YLK 79 YLK H36 H36 H 0 1 N N N 12.188 59.313 -2.802 2.522 2.305 0.632 H36 YLK 80 YLK H37 H37 H 0 1 N N N 12.160 61.254 -4.069 1.933 3.099 3.204 H37 YLK 81 YLK H38 H38 H 0 1 N N N 10.423 61.313 -3.616 1.807 4.187 1.793 H38 YLK 82 YLK H39 H39 H 0 1 N N N 10.070 58.744 -6.210 -1.408 2.066 1.719 H39 YLK 83 YLK H40 H40 H 0 1 N N N 13.315 56.450 -5.384 -1.578 -0.882 0.108 H40 YLK 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLK C1 O2 SING N N 1 YLK C14 C12 SING N N 2 YLK O2 C3 SING N N 3 YLK O16 S15 DOUB N N 4 YLK C12 S15 SING N N 5 YLK C12 C9 SING N N 6 YLK O20 C19 DOUB N N 7 YLK C3 C5 SING N N 8 YLK C3 C46 SING N N 9 YLK C7 C5 DOUB N Z 10 YLK C7 C8 SING N N 11 YLK S15 O17 DOUB N N 12 YLK S15 N18 SING N N 13 YLK C5 F6 SING N N 14 YLK C8 C9 SING N N 15 YLK C9 C11 SING N N 16 YLK C19 N18 SING N N 17 YLK C19 C21 SING N N 18 YLK C46 O45 SING N N 19 YLK C46 C41 SING N N 20 YLK O45 C44 SING N N 21 YLK C21 C49 DOUB Y N 22 YLK C21 C22 SING Y N 23 YLK C49 C48 SING Y N 24 YLK C41 C40 SING N N 25 YLK C41 C43 SING N N 26 YLK C40 N39 SING N N 27 YLK C44 C43 SING N N 28 YLK C22 C23 DOUB Y N 29 YLK C48 N39 SING N N 30 YLK C48 C24 DOUB Y N 31 YLK N39 C38 SING N N 32 YLK C23 C24 SING Y N 33 YLK C24 O25 SING N N 34 YLK C28 C29 SING N N 35 YLK C28 C27 SING N N 36 YLK C38 C27 SING N N 37 YLK C29 C30 SING N N 38 YLK C26 O25 SING N N 39 YLK C26 C27 SING N N 40 YLK C27 C37 SING N N 41 YLK C30 C31 SING N N 42 YLK C37 C31 DOUB Y N 43 YLK C37 C36 SING Y N 44 YLK C31 C32 SING Y N 45 YLK C36 C35 DOUB Y N 46 YLK C32 C33 DOUB Y N 47 YLK C35 C33 SING Y N 48 YLK C33 CL34 SING N N 49 YLK C1 H1 SING N N 50 YLK C1 H2 SING N N 51 YLK C1 H3 SING N N 52 YLK C3 H4 SING N N 53 YLK C7 H5 SING N N 54 YLK C8 H6 SING N N 55 YLK C8 H7 SING N N 56 YLK C11 H8 SING N N 57 YLK C11 H9 SING N N 58 YLK C11 H10 SING N N 59 YLK C12 H11 SING N N 60 YLK C23 H12 SING N N 61 YLK C30 H13 SING N N 62 YLK C30 H14 SING N N 63 YLK C32 H15 SING N N 64 YLK C35 H16 SING N N 65 YLK C36 H17 SING N N 66 YLK C38 H18 SING N N 67 YLK C38 H19 SING N N 68 YLK C40 H20 SING N N 69 YLK C40 H21 SING N N 70 YLK C9 H22 SING N N 71 YLK C14 H23 SING N N 72 YLK C14 H24 SING N N 73 YLK C14 H25 SING N N 74 YLK N18 H26 SING N N 75 YLK C22 H27 SING N N 76 YLK C26 H28 SING N N 77 YLK C26 H29 SING N N 78 YLK C28 H30 SING N N 79 YLK C28 H31 SING N N 80 YLK C29 H32 SING N N 81 YLK C29 H33 SING N N 82 YLK C41 H34 SING N N 83 YLK C43 H35 SING N N 84 YLK C43 H36 SING N N 85 YLK C44 H37 SING N N 86 YLK C44 H38 SING N N 87 YLK C46 H39 SING N N 88 YLK C49 H40 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLK SMILES ACDLabs 12.01 "Clc1cc2CCCC3(CN4CC5CCOC5C(OC)C(F)=CCC(C)C(C)S(=O)(=O)NC(=O)c5cc4c(cc5)OC3)c2cc1" YLK InChI InChI 1.06 "InChI=1S/C33H40ClFN2O6S/c1-20-6-10-27(35)31(41-3)30-24(12-14-42-30)17-37-18-33(13-4-5-22-15-25(34)8-9-26(22)33)19-43-29-11-7-23(16-28(29)37)32(38)36-44(39,40)21(20)2/h7-11,15-16,20-21,24,30-31H,4-6,12-14,17-19H2,1-3H3,(H,36,38)/b27-10-/t20-,21+,24-,30+,31-,33-/m0/s1" YLK InChIKey InChI 1.06 ILSUSGXGXIBNOR-FBRKDVJZSA-N YLK SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]/1[C@@H]2OCC[C@H]2CN3C[C@@]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N[S](=O)(=O)[C@H](C)[C@@H](C)C\C=C/1F" YLK SMILES CACTVS 3.385 "CO[CH]1[CH]2OCC[CH]2CN3C[C]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N[S](=O)(=O)[CH](C)[CH](C)CC=C1F" YLK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C/C=C(/[C@@H]([C@H]2[C@@H](CCO2)CN3C[C@@]4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)NS(=O)(=O)[C@@H]1C)OC)\F" YLK SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC=C(C(C2C(CCO2)CN3CC4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)NS(=O)(=O)C1C)OC)F" # _pdbx_chem_comp_identifier.comp_id YLK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1'S,3aS,5R,16R,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-16,17-dimethyl-2,3,3',3a,4',16,17,18,21,21a-decahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-etheno-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalene]-13,15,15(4H,14H)-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLK "Create component" 2023-02-09 RCSB YLK "Initial release" 2023-05-17 RCSB #