data_YLM # _chem_comp.id YLM _chem_comp.name "(1R,2S)-2-((S)-2-((((4-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 F N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLM C11 C1 C 0 1 N N S 8.717 19.803 27.734 -3.275 0.897 0.295 C11 YLM 1 YLM C12 C2 C 0 1 N N N 7.729 19.769 26.540 -3.688 -0.062 1.412 C12 YLM 2 YLM C13 C3 C 0 1 N N S 7.359 21.127 25.959 -4.344 -1.303 0.803 C13 YLM 3 YLM C14 C4 C 0 1 N N N 6.413 20.978 24.788 -4.784 -2.257 1.890 C14 YLM 4 YLM C16 C5 C 0 1 N N N 5.362 22.537 26.210 -6.553 -2.139 0.390 C16 YLM 5 YLM C17 C6 C 0 1 N N N 6.524 21.905 26.986 -5.656 -0.921 0.079 C17 YLM 6 YLM C27 C7 C 0 1 Y N N 11.943 30.202 24.922 8.308 -0.201 1.285 C27 YLM 7 YLM C02 C8 C 0 1 N N N 10.639 24.073 25.929 2.433 -0.391 -0.936 C02 YLM 8 YLM C04 C9 C 0 1 N N S 11.822 22.153 27.023 0.012 -0.662 -0.892 C04 YLM 9 YLM C05 C10 C 0 1 N N N 12.920 21.877 28.041 -0.253 -2.140 -1.186 C05 YLM 10 YLM C06 C11 C 0 1 N N N 14.338 22.287 27.670 -1.564 -2.279 -1.962 C06 YLM 11 YLM C07 C12 C 0 1 N N N 15.344 22.079 28.844 -1.407 -1.646 -3.346 C07 YLM 12 YLM C08 C13 C 0 1 N N N 14.795 21.500 26.451 -1.911 -3.761 -2.116 C08 YLM 13 YLM C09 C14 C 0 1 N N N 10.445 21.684 27.539 -1.082 -0.122 -0.007 C09 YLM 14 YLM C19 C15 C 0 1 N N R 8.926 18.400 28.302 -2.702 2.177 0.907 C19 YLM 15 YLM C23 C16 C 0 1 N N N 11.644 25.893 24.707 4.803 -0.222 -1.158 C23 YLM 16 YLM C24 C17 C 0 1 Y N N 11.736 27.409 24.758 6.039 -0.215 -0.296 C24 YLM 17 YLM C25 C18 C 0 1 Y N N 10.921 28.249 24.000 6.534 0.980 0.192 C25 YLM 18 YLM C26 C19 C 0 1 Y N N 11.006 29.643 24.060 7.668 0.988 0.982 C26 YLM 19 YLM C29 C20 C 0 1 Y N N 12.770 29.420 25.698 7.816 -1.397 0.790 C29 YLM 20 YLM C30 C21 C 0 1 Y N N 12.646 28.031 25.603 6.682 -1.403 0.001 C30 YLM 21 YLM F28 F1 F 0 1 N N N 12.054 31.544 25.006 9.417 -0.194 2.057 F28 YLM 22 YLM N03 N1 N 0 1 N N N 11.746 23.560 26.601 1.302 -0.522 -0.213 N03 YLM 23 YLM N10 N2 N 0 1 N N N 9.993 20.403 27.296 -2.257 0.260 -0.545 N10 YLM 24 YLM N15 N3 N 0 1 N N N 5.305 21.789 24.938 -6.026 -2.706 1.637 N15 YLM 25 YLM O01 O1 O 0 1 N N N 9.683 23.405 25.578 2.373 -0.296 -2.146 O01 YLM 26 YLM O18 O2 O 0 1 N N N 6.566 20.275 23.779 -4.115 -2.573 2.851 O18 YLM 27 YLM O20 O3 O 0 1 N N N 9.740 18.543 29.485 -3.695 2.800 1.724 O20 YLM 28 YLM O21 O4 O 0 1 N N N 9.765 22.502 28.184 -0.905 -0.031 1.189 O21 YLM 29 YLM O22 O5 O 0 1 N N N 10.684 25.441 25.666 3.628 -0.366 -0.317 O22 YLM 30 YLM H1 H1 H 0 1 N N N 8.278 20.433 28.522 -4.145 1.143 -0.313 H1 YLM 31 YLM H2 H2 H 0 1 N N N 6.803 19.282 26.879 -2.806 -0.360 1.980 H2 YLM 32 YLM H3 H3 H 0 1 N N N 8.186 19.170 25.738 -4.396 0.435 2.075 H3 YLM 33 YLM H4 H4 H 0 1 N N N 8.258 21.694 25.675 -3.658 -1.796 0.114 H4 YLM 34 YLM H5 H5 H 0 1 N N N 5.556 23.604 26.024 -7.587 -1.821 0.528 H5 YLM 35 YLM H6 H6 H 0 1 N N N 4.420 22.427 26.766 -6.489 -2.871 -0.415 H6 YLM 36 YLM H7 H7 H 0 1 N N N 6.139 21.223 27.759 -6.080 -0.007 0.496 H7 YLM 37 YLM H8 H8 H 0 1 N N N 7.136 22.687 27.459 -5.494 -0.819 -0.994 H8 YLM 38 YLM H9 H9 H 0 1 N N N 12.050 21.550 26.132 0.031 -0.104 -1.828 H9 YLM 39 YLM H10 H10 H 0 1 N N N 12.654 22.410 28.966 0.566 -2.545 -1.780 H10 YLM 40 YLM H11 H11 H 0 1 N N N 12.929 20.794 28.231 -0.327 -2.690 -0.247 H11 YLM 41 YLM H12 H12 H 0 1 N N N 14.334 23.356 27.412 -2.363 -1.773 -1.419 H12 YLM 42 YLM H13 H13 H 0 1 N N N 15.007 22.651 29.722 -0.653 -2.191 -3.912 H13 YLM 43 YLM H14 H14 H 0 1 N N N 15.393 21.010 29.100 -2.359 -1.688 -3.875 H14 YLM 44 YLM H15 H15 H 0 1 N N N 16.341 22.429 28.539 -1.098 -0.606 -3.236 H15 YLM 45 YLM H16 H16 H 0 1 N N N 15.820 21.798 26.185 -2.023 -4.213 -1.130 H16 YLM 46 YLM H17 H17 H 0 1 N N N 14.774 20.424 26.680 -2.845 -3.860 -2.669 H17 YLM 47 YLM H18 H18 H 0 1 N N N 14.122 21.708 25.607 -1.112 -4.267 -2.658 H18 YLM 48 YLM S1 S1 S 0 1 N Y N 9.408 17.769 27.585 -2.210 3.314 -0.418 S1 YLM 49 YLM H20 H20 H 0 1 N N N 7.937 18.041 28.621 -1.832 1.931 1.516 H20 YLM 50 YLM H21 H21 H 0 1 N N N 11.333 25.578 23.700 4.741 0.714 -1.712 H21 YLM 51 YLM H22 H22 H 0 1 N N N 12.627 25.458 24.939 4.853 -1.056 -1.858 H22 YLM 52 YLM H23 H23 H 0 1 N N N 10.193 27.804 23.338 6.034 1.908 -0.045 H23 YLM 53 YLM H24 H24 H 0 1 N N N 10.364 30.266 23.456 8.053 1.922 1.364 H24 YLM 54 YLM H25 H25 H 0 1 N N N 13.495 29.868 26.362 8.318 -2.325 1.022 H25 YLM 55 YLM H26 H26 H 0 1 N N N 13.287 27.413 26.215 6.295 -2.336 -0.381 H26 YLM 56 YLM H27 H27 H 0 1 N N N 12.514 24.168 26.803 1.344 -0.525 0.756 H27 YLM 57 YLM H28 H28 H 0 1 N N N 10.599 19.814 26.762 -2.430 0.113 -1.488 H28 YLM 58 YLM H29 H29 H 0 1 N N N 4.562 21.860 24.273 -6.511 -3.324 2.205 H29 YLM 59 YLM H30 H30 H 0 1 N N N 9.893 17.688 29.870 -4.006 2.248 2.455 H30 YLM 60 YLM O1 O6 O 0 1 N Y N ? ? ? -3.266 3.476 -1.354 O1 YLM 61 YLM O2 O7 O 0 1 N Y N ? ? ? -1.527 4.439 0.118 O2 YLM 62 YLM O3 O8 O 0 1 N Y N ? ? ? -1.138 2.557 -1.189 O3 YLM 63 YLM H19 H19 H 0 1 N Y N ? ? ? -0.773 3.046 -1.939 H19 YLM 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLM O18 C14 DOUB N N 1 YLM C25 C26 DOUB Y N 2 YLM C25 C24 SING Y N 3 YLM C26 C27 SING Y N 4 YLM C23 C24 SING N N 5 YLM C23 O22 SING N N 6 YLM C24 C30 DOUB Y N 7 YLM C14 N15 SING N N 8 YLM C14 C13 SING N N 9 YLM C27 F28 SING N N 10 YLM C27 C29 DOUB Y N 11 YLM N15 C16 SING N N 12 YLM O01 C02 DOUB N N 13 YLM C30 C29 SING Y N 14 YLM O22 C02 SING N N 15 YLM C02 N03 SING N N 16 YLM C13 C12 SING N N 17 YLM C13 C17 SING N N 18 YLM C16 C17 SING N N 19 YLM C08 C06 SING N N 20 YLM C12 C11 SING N N 21 YLM N03 C04 SING N N 22 YLM C04 C09 SING N N 23 YLM C04 C05 SING N N 24 YLM N10 C09 SING N N 25 YLM N10 C11 SING N N 26 YLM C09 O21 DOUB N N 27 YLM C06 C05 SING N N 28 YLM C06 C07 SING N N 29 YLM C11 C19 SING N N 30 YLM C19 O20 SING N N 31 YLM C11 H1 SING N N 32 YLM C12 H2 SING N N 33 YLM C12 H3 SING N N 34 YLM C13 H4 SING N N 35 YLM C16 H5 SING N N 36 YLM C16 H6 SING N N 37 YLM C17 H7 SING N N 38 YLM C17 H8 SING N N 39 YLM C04 H9 SING N N 40 YLM C05 H10 SING N N 41 YLM C05 H11 SING N N 42 YLM C06 H12 SING N N 43 YLM C07 H13 SING N N 44 YLM C07 H14 SING N N 45 YLM C07 H15 SING N N 46 YLM C08 H16 SING N N 47 YLM C08 H17 SING N N 48 YLM C08 H18 SING N N 49 YLM C19 S1 SING N N 50 YLM C19 H20 SING N N 51 YLM C23 H21 SING N N 52 YLM C23 H22 SING N N 53 YLM C25 H23 SING N N 54 YLM C26 H24 SING N N 55 YLM C29 H25 SING N N 56 YLM C30 H26 SING N N 57 YLM N03 H27 SING N N 58 YLM N10 H28 SING N N 59 YLM N15 H29 SING N N 60 YLM O20 H30 SING N N 61 YLM S1 O1 DOUB N N 62 YLM S1 O2 DOUB N N 63 YLM S1 O3 SING N N 64 YLM O3 H19 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLM SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCc1ccc(F)cc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YLM InChI InChI 1.03 "InChI=1S/C21H30FN3O8S/c1-12(2)9-16(25-21(29)33-11-13-3-5-15(22)6-4-13)19(27)24-17(20(28)34(30,31)32)10-14-7-8-23-18(14)26/h3-6,12,14,16-17,20,28H,7-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20+/m0/s1" YLM InChIKey InChI 1.03 SXLHHGJXSMBQOQ-JWWIWJDOSA-N YLM SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1ccc(F)cc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O" YLM SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1ccc(F)cc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YLM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F" YLM SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YLM "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-[(N-{[(4-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YLM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(4-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLM "Create component" 2021-03-12 RCSB YLM "Initial release" 2021-03-24 RCSB ##