data_YLN # _chem_comp.id YLN _chem_comp.name "bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]-bis(oxidanyl)boranuide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H10 B F6 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.013 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PF8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLN C4 C1 C 0 1 N N N N N N -55.582 54.323 -37.471 -4.451 0.750 0.335 C4 YLN 1 YLN C5 C2 C 0 1 N N N N N N -52.964 57.139 -40.440 -0.674 -2.256 1.711 C5 YLN 2 YLN C6 C3 C 0 1 Y N N N N N -48.889 56.008 -37.596 3.172 0.422 0.001 C6 YLN 3 YLN C7 C4 C 0 1 Y N N N N N -50.279 56.111 -37.635 2.401 -0.721 -0.236 C7 YLN 4 YLN C8 C5 C 0 1 Y N N N N N -50.562 57.498 -37.488 1.214 -0.324 -0.748 C8 YLN 5 YLN C9 C6 C 0 1 N N N N N N -48.039 54.792 -37.705 4.570 0.444 0.564 C9 YLN 6 YLN C10 C7 C 0 1 N N N N N N -49.036 59.534 -37.211 0.146 1.871 -1.332 C10 YLN 7 YLN N1 N1 N 0 1 Y N N N N N -53.428 56.660 -39.141 -1.505 -1.350 0.914 N1 YLN 8 YLN N2 N2 N 0 1 Y N N N N N -54.350 55.651 -39.119 -2.728 -0.792 1.308 N2 YLN 9 YLN C3 C8 C 0 1 Y N N N N N -53.104 57.054 -37.879 -1.225 -0.901 -0.327 C3 YLN 10 YLN N3 N3 N 0 1 Y N N N N N -49.358 58.121 -37.381 1.232 1.023 -0.832 N3 YLN 11 YLN C1 C9 C 0 1 Y N N N N N -54.608 55.385 -37.838 -3.167 -0.039 0.333 C1 YLN 12 YLN O1 O1 O 0 1 N N N N N N -52.051 59.285 -38.534 -0.234 -1.074 -2.494 O1 YLN 13 YLN C2 C10 C 0 1 Y N N N N N -53.864 56.223 -37.007 -2.238 -0.090 -0.711 C2 YLN 14 YLN N4 N4 N 0 1 Y N N N N N -48.336 57.214 -37.445 2.472 1.468 -0.356 N4 YLN 15 YLN B1 B1 B -1 1 N N N N N N -52.028 58.218 -37.466 0.038 -1.253 -1.167 B1 YLN 16 YLN F1 F1 F 0 1 N N N N N N -55.781 53.454 -38.454 -4.173 2.093 0.058 F1 YLN 17 YLN F2 F2 F 0 1 N N N N N N -55.180 53.608 -36.429 -5.313 0.241 -0.642 F2 YLN 18 YLN F3 F3 F 0 1 N N N N N N -56.769 54.806 -37.135 -5.058 0.649 1.591 F3 YLN 19 YLN F4 F4 F 0 1 N N N N N N -48.643 53.811 -38.366 4.590 -0.235 1.788 F4 YLN 20 YLN F5 F5 F 0 1 N N N N N N -46.901 55.013 -38.350 5.443 -0.183 -0.331 F5 YLN 21 YLN F6 F6 F 0 1 N N N N N N -47.704 54.293 -36.523 4.973 1.769 0.758 F6 YLN 22 YLN H1 H1 H 0 1 N N N N N N -53.464 56.573 -41.240 -0.919 -3.288 1.462 H1 YLN 23 YLN H2 H2 H 0 1 N N N N N N -53.202 58.208 -40.543 0.378 -2.069 1.494 H2 YLN 24 YLN H3 H3 H 0 1 N N N N N N -51.876 56.997 -40.516 -0.862 -2.083 2.771 H3 YLN 25 YLN H4 H4 H 0 1 N N N N N N -50.991 55.307 -37.752 2.701 -1.741 -0.045 H4 YLN 26 YLN H5 H5 H 0 1 N N N N N N -47.944 59.658 -37.157 -0.470 2.202 -0.496 H5 YLN 27 YLN H6 H6 H 0 1 N N N N N N -49.428 60.105 -38.066 0.567 2.739 -1.839 H6 YLN 28 YLN H7 H7 H 0 1 N N N N N N -49.493 59.905 -36.282 -0.466 1.302 -2.032 H7 YLN 29 YLN H8 H8 H 0 1 N N N N N N -51.432 59.970 -38.311 -0.411 -0.156 -2.740 H8 YLN 30 YLN H9 H9 H 0 1 N N N N N N -53.864 56.238 -35.927 -2.314 0.428 -1.656 H9 YLN 31 YLN O2 O2 O 0 1 N Y N N N N ? ? ? 0.385 -2.556 -0.943 O2 YLN 32 YLN H11 H11 H 0 1 N N N N N N ? ? ? 0.648 -2.742 -0.032 H11 YLN 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLN C5 N1 SING N N 1 YLN N1 N2 SING Y N 2 YLN N1 C3 SING Y N 3 YLN N2 C1 DOUB Y N 4 YLN O1 B1 SING N N 5 YLN F1 C4 SING N N 6 YLN F4 C9 SING N N 7 YLN F5 C9 SING N N 8 YLN C3 B1 SING N N 9 YLN C3 C2 DOUB Y N 10 YLN C1 C4 SING N N 11 YLN C1 C2 SING Y N 12 YLN C9 C6 SING N N 13 YLN C9 F6 SING N N 14 YLN C7 C6 SING Y N 15 YLN C7 C8 DOUB Y N 16 YLN C6 N4 DOUB Y N 17 YLN C8 B1 SING N N 18 YLN C8 N3 SING Y N 19 YLN C4 F3 SING N N 20 YLN C4 F2 SING N N 21 YLN N4 N3 SING Y N 22 YLN N3 C10 SING N N 23 YLN C5 H1 SING N N 24 YLN C5 H2 SING N N 25 YLN C5 H3 SING N N 26 YLN C7 H4 SING N N 27 YLN C10 H5 SING N N 28 YLN C10 H6 SING N N 29 YLN C10 H7 SING N N 30 YLN O1 H8 SING N N 31 YLN C2 H9 SING N N 32 YLN B1 O2 SING N N 33 YLN O2 H11 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLN InChI InChI 1.06 "InChI=1S/C10H10BF6N4O2/c1-20-7(3-5(18-20)9(12,13)14)11(22,23)8-4-6(10(15,16)17)19-21(8)2/h3-4,22-23H,1-2H3/q-1" YLN InChIKey InChI 1.06 XCHJAGXOPCFIKR-UHFFFAOYSA-N YLN SMILES_CANONICAL CACTVS 3.385 "Cn1nc(cc1[B-](O)(O)c2cc(nn2C)C(F)(F)F)C(F)(F)F" YLN SMILES CACTVS 3.385 "Cn1nc(cc1[B-](O)(O)c2cc(nn2C)C(F)(F)F)C(F)(F)F" YLN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-](c1cc(nn1C)C(F)(F)F)(c2cc(nn2C)C(F)(F)F)(O)O" YLN SMILES "OpenEye OEToolkits" 2.0.7 "[B-](c1cc(nn1C)C(F)(F)F)(c2cc(nn2C)C(F)(F)F)(O)O" # _pdbx_chem_comp_identifier.comp_id YLN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]-bis(oxidanyl)boranuide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLN "Create component" 2023-06-19 PDBE YLN "Modify coordinates" 2023-07-18 PDBE YLN "Modify leaving atom flag" 2023-08-10 PDBE YLN "Modify formal charge" 2023-08-10 PDBE YLN "Initial release" 2024-01-24 RCSB YLN "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YLN _pdbx_chem_comp_pcm.modified_residue_id HIS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #