data_YLQ # _chem_comp.id YLQ _chem_comp.name "3-[1-[2-(4-METHYLPHENOXY)ETHYL]BENZIMIDAZOL-2-YL]SULFANYLPROPANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-06-04 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.439 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YLQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLQ C01 C01 C 0 1 N N N 11.598 -13.189 -33.529 7.155 2.236 1.646 C01 YLQ 1 YLQ C02 C02 C 0 1 Y N N 12.637 -14.255 -33.574 6.005 1.660 0.860 C02 YLQ 2 YLQ C03 C03 C 0 1 Y N N 12.460 -15.418 -32.883 6.079 1.587 -0.519 C03 YLQ 3 YLQ C04 C04 C 0 1 Y N N 13.470 -16.447 -32.952 5.026 1.060 -1.241 C04 YLQ 4 YLQ C05 C05 C 0 1 Y N N 14.646 -16.253 -33.715 3.894 0.603 -0.582 C05 YLQ 5 YLQ O06 O06 O 0 1 N N N 15.608 -17.214 -33.780 2.857 0.084 -1.291 O06 YLQ 6 YLQ C07 C07 C 0 1 N N N 16.126 -17.827 -32.648 1.724 -0.367 -0.546 C07 YLQ 7 YLQ C08 C08 C 0 1 N N N 17.486 -17.399 -32.243 0.667 -0.915 -1.507 C08 YLQ 8 YLQ N09 N09 N 0 1 Y N N 17.723 -16.684 -30.954 -0.495 -1.377 -0.744 N09 YLQ 9 YLQ C10 C10 C 0 1 Y N N 18.697 -15.768 -30.700 -1.587 -0.632 -0.399 C10 YLQ 10 YLQ S11 S11 S 0 1 N N N 19.834 -15.187 -31.881 -1.825 1.066 -0.808 S11 YLQ 11 YLQ C12 C12 C 0 1 N N N 19.650 -13.383 -31.753 -3.439 1.351 -0.041 C12 YLQ 12 YLQ C13 C13 C 0 1 N N N 20.136 -12.477 -32.813 -3.864 2.802 -0.273 C13 YLQ 13 YLQ C14 C14 C 0 1 N N N 21.584 -12.150 -32.929 -5.208 3.040 0.366 C14 YLQ 14 YLQ O15 O15 O 0 1 N N N 22.426 -12.708 -32.207 -5.768 2.141 0.948 O15 YLQ 15 YLQ O16 O16 O 0 1 N N N 21.949 -11.293 -33.803 -5.783 4.250 0.289 O16 YLQ 16 YLQ N17 N17 N 0 1 Y N N 18.644 -15.335 -29.434 -2.431 -1.367 0.282 N17 YLQ 17 YLQ C18 C18 C 0 1 Y N N 17.602 -15.989 -28.836 -1.935 -2.625 0.415 C18 YLQ 18 YLQ C19 C19 C 0 1 Y N N 17.102 -15.921 -27.521 -2.412 -3.784 1.034 C19 YLQ 19 YLQ C20 C20 C 0 1 Y N N 16.020 -16.720 -27.212 -1.660 -4.937 0.998 C20 YLQ 20 YLQ C21 C21 C 0 1 Y N N 15.447 -17.573 -28.137 -0.433 -4.957 0.353 C21 YLQ 21 YLQ C22 C22 C 0 1 Y N N 15.941 -17.651 -29.452 0.052 -3.821 -0.263 C22 YLQ 22 YLQ C23 C23 C 0 1 Y N N 17.026 -16.836 -29.778 -0.694 -2.653 -0.242 C23 YLQ 23 YLQ C24 C24 C 0 1 Y N N 14.818 -15.055 -34.421 3.822 0.677 0.801 C24 YLQ 24 YLQ C25 C25 C 0 1 Y N N 13.835 -14.066 -34.357 4.880 1.201 1.520 C25 YLQ 25 YLQ H011 H011 H 0 0 N N N 11.810 -12.505 -32.694 7.012 3.311 1.763 H011 YLQ 26 YLQ H012 H012 H 0 0 N N N 11.608 -12.628 -34.475 7.195 1.766 2.628 H012 YLQ 27 YLQ H013 H013 H 0 0 N N N 10.609 -13.647 -33.385 8.087 2.049 1.114 H013 YLQ 28 YLQ H03 H03 H 0 1 N N N 11.571 -15.568 -32.289 6.960 1.943 -1.031 H03 YLQ 29 YLQ H25 H25 H 0 1 N N N 13.973 -13.144 -34.902 4.826 1.254 2.597 H25 YLQ 30 YLQ H04 H04 H 0 1 N N N 13.327 -17.374 -32.416 5.084 1.004 -2.318 H04 YLQ 31 YLQ H24 H24 H 0 1 N N N 15.708 -14.897 -35.012 2.942 0.322 1.317 H24 YLQ 32 YLQ H071 H071 H 0 0 N N N 15.444 -17.619 -31.810 2.031 -1.154 0.143 H071 YLQ 33 YLQ H072 H072 H 0 0 N N N 16.156 -18.910 -32.836 1.305 0.466 0.018 H072 YLQ 34 YLQ H081 H081 H 0 0 N N N 18.102 -18.310 -32.212 0.359 -0.128 -2.196 H081 YLQ 35 YLQ H082 H082 H 0 0 N N N 17.853 -16.735 -33.039 1.086 -1.748 -2.071 H082 YLQ 36 YLQ H121 H121 H 0 0 N N N 18.572 -13.188 -31.650 -4.175 0.681 -0.484 H121 YLQ 37 YLQ H122 H122 H 0 0 N N N 20.167 -13.084 -30.829 -3.371 1.159 1.030 H122 YLQ 38 YLQ H131 H131 H 0 0 N N N 19.838 -12.927 -33.772 -3.128 3.472 0.170 H131 YLQ 39 YLQ H132 H132 H 0 0 N N N 19.608 -11.522 -32.676 -3.932 2.994 -1.344 H132 YLQ 40 YLQ H16 H16 H 0 1 N N N 22.893 -11.195 -33.776 -6.646 4.354 0.715 H16 YLQ 41 YLQ H19 H19 H 0 1 N N N 17.548 -15.270 -26.784 -3.366 -3.775 1.538 H19 YLQ 42 YLQ H20 H20 H 0 1 N N N 15.607 -16.678 -26.215 -2.028 -5.832 1.477 H20 YLQ 43 YLQ H21 H21 H 0 1 N N N 14.608 -18.188 -27.846 0.148 -5.868 0.332 H21 YLQ 44 YLQ H22 H22 H 0 1 N N N 15.498 -18.315 -30.180 1.009 -3.843 -0.763 H22 YLQ 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLQ C01 C02 SING N N 1 YLQ C02 C03 SING Y N 2 YLQ C02 C25 DOUB Y N 3 YLQ C03 C04 DOUB Y N 4 YLQ C04 C05 SING Y N 5 YLQ C05 O06 SING N N 6 YLQ C05 C24 DOUB Y N 7 YLQ O06 C07 SING N N 8 YLQ C07 C08 SING N N 9 YLQ C08 N09 SING N N 10 YLQ N09 C10 SING Y N 11 YLQ N09 C23 SING Y N 12 YLQ C10 S11 SING N N 13 YLQ C10 N17 DOUB Y N 14 YLQ S11 C12 SING N N 15 YLQ C12 C13 SING N N 16 YLQ C13 C14 SING N N 17 YLQ C14 O15 DOUB N N 18 YLQ C14 O16 SING N N 19 YLQ N17 C18 SING Y N 20 YLQ C18 C19 DOUB Y N 21 YLQ C18 C23 SING Y N 22 YLQ C19 C20 SING Y N 23 YLQ C20 C21 DOUB Y N 24 YLQ C21 C22 SING Y N 25 YLQ C22 C23 DOUB Y N 26 YLQ C24 C25 SING Y N 27 YLQ C01 H011 SING N N 28 YLQ C01 H012 SING N N 29 YLQ C01 H013 SING N N 30 YLQ C03 H03 SING N N 31 YLQ C25 H25 SING N N 32 YLQ C04 H04 SING N N 33 YLQ C24 H24 SING N N 34 YLQ C07 H071 SING N N 35 YLQ C07 H072 SING N N 36 YLQ C08 H081 SING N N 37 YLQ C08 H082 SING N N 38 YLQ C12 H121 SING N N 39 YLQ C12 H122 SING N N 40 YLQ C13 H131 SING N N 41 YLQ C13 H132 SING N N 42 YLQ O16 H16 SING N N 43 YLQ C19 H19 SING N N 44 YLQ C20 H20 SING N N 45 YLQ C21 H21 SING N N 46 YLQ C22 H22 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLQ SMILES ACDLabs 12.01 "O=C(O)CCSc2nc1ccccc1n2CCOc3ccc(cc3)C" YLQ InChI InChI 1.03 "InChI=1S/C19H20N2O3S/c1-14-6-8-15(9-7-14)24-12-11-21-17-5-3-2-4-16(17)20-19(21)25-13-10-18(22)23/h2-9H,10-13H2,1H3,(H,22,23)" YLQ InChIKey InChI 1.03 KGCGDYADLNUQIH-UHFFFAOYSA-N YLQ SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(OCCn2c(SCCC(O)=O)nc3ccccc23)cc1" YLQ SMILES CACTVS 3.385 "Cc1ccc(OCCn2c(SCCC(O)=O)nc3ccccc23)cc1" YLQ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1)OCCn2c3ccccc3nc2SCCC(=O)O" YLQ SMILES "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1)OCCn2c3ccccc3nc2SCCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YLQ "SYSTEMATIC NAME" ACDLabs 12.01 "3-({1-[2-(4-methylphenoxy)ethyl]-1H-benzimidazol-2-yl}sulfanyl)propanoic acid" YLQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "3-[1-[2-(4-methylphenoxy)ethyl]benzimidazol-2-yl]sulfanylpropanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLQ "Create component" 2011-06-04 EBI YLQ "Modify descriptor" 2014-09-05 RCSB #