data_YLS # _chem_comp.id YLS _chem_comp.name "(1S,2S)-2-((S)-2-((((4-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 F N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLS C11 C1 C 0 1 N N S N N N 8.707 19.829 27.713 2.851 0.494 -1.110 C11 YLS 1 YLS C12 C2 C 0 1 N N N N N N 7.722 19.717 26.538 4.025 1.177 -0.405 C12 YLS 2 YLS C13 C3 C 0 1 N N S N N N 7.340 21.067 25.930 3.521 2.411 0.345 C13 YLS 3 YLS C14 C4 C 0 1 N N N N N N 6.377 20.894 24.783 4.657 3.080 1.087 C14 YLS 4 YLS C19 C5 C 0 1 N N S N N N 9.030 18.482 28.320 3.370 -0.675 -1.949 C19 YLS 5 YLS C17 C6 C 0 1 N N N N N N 6.525 21.874 26.952 3.033 3.488 -0.651 C17 YLS 6 YLS C16 C7 C 0 1 N N N N N N 5.356 22.497 26.178 3.477 4.791 0.050 C16 YLS 7 YLS C26 C8 C 0 1 Y N N N N N 6.151 25.609 28.041 -8.341 -0.644 -0.498 C26 YLS 8 YLS C25 C9 C 0 1 Y N N N N N 7.419 25.504 27.452 -7.162 -0.806 0.205 C25 YLS 9 YLS C24 C10 C 0 1 Y N N N N N 7.663 25.828 26.103 -6.352 0.286 0.458 C24 YLS 10 YLS C23 C11 C 0 1 N N N N N N 9.037 25.701 25.450 -5.067 0.108 1.224 C23 YLS 11 YLS C02 C12 C 0 1 N N N N N N 10.718 24.054 26.115 -2.761 -0.359 0.823 C02 YLS 12 YLS C04 C13 C 0 1 N N S N N N 11.801 22.178 27.301 -0.363 -0.716 0.578 C04 YLS 13 YLS C05 C14 C 0 1 N N N N N N 13.005 21.814 28.155 -0.094 -2.155 1.025 C05 YLS 14 YLS C06 C15 C 0 1 N N N N N N 14.387 22.253 27.671 1.226 -2.211 1.795 C06 YLS 15 YLS C07 C16 C 0 1 N N N N N N 15.475 22.094 28.778 1.091 -1.421 3.098 C07 YLS 16 YLS C08 C17 C 0 1 N N N N N N 14.793 21.457 26.441 1.567 -3.668 2.115 C08 YLS 17 YLS C09 C18 C 0 1 N N N N N N 10.483 21.549 27.837 0.645 -0.319 -0.470 C09 YLS 18 YLS C27 C19 C 0 1 Y N N N N N 5.096 26.034 27.231 -8.709 0.611 -0.952 C27 YLS 19 YLS C29 C20 C 0 1 Y N N N N N 5.279 26.354 25.900 -7.897 1.704 -0.698 C29 YLS 20 YLS C30 C21 C 0 1 Y N N N N N 6.554 26.238 25.361 -6.721 1.540 0.009 C30 YLS 21 YLS F28 F1 F 0 1 N N N N N N 3.858 26.153 27.754 -9.859 0.770 -1.644 F28 YLS 22 YLS N03 N1 N 0 1 N N N N N N 11.583 23.615 27.106 -1.713 -0.623 0.017 N03 YLS 23 YLS N10 N2 N 0 1 N N N N N N 9.915 20.477 27.255 1.905 -0.006 -0.109 N10 YLS 24 YLS N15 N3 N 0 1 N N N N N N 5.275 21.714 24.929 4.612 4.411 0.900 N15 YLS 25 YLS O01 O1 O 0 1 N N N N N N 10.532 23.431 25.075 -2.600 -0.289 2.026 O01 YLS 26 YLS O18 O2 O 0 1 N N N N N N 6.511 20.162 23.794 5.488 2.500 1.754 O18 YLS 27 YLS O20 O3 O 0 1 N N N N N N 7.838 17.925 28.864 4.378 -0.206 -2.847 O20 YLS 28 YLS O21 O4 O 0 1 N N N N N N 9.941 22.054 28.838 0.322 -0.282 -1.638 O21 YLS 29 YLS O22 O5 O 0 1 N N N N N N 10.041 25.273 26.393 -3.985 -0.172 0.296 O22 YLS 30 YLS H1 H1 H 0 1 N N N N N N 8.238 20.451 28.489 2.349 1.212 -1.758 H1 YLS 31 YLS H2 H2 H 0 1 N N N N N N 6.806 19.226 26.898 4.479 0.482 0.301 H2 YLS 32 YLS H3 H3 H 0 1 N N N N N N 8.185 19.101 25.753 4.766 1.479 -1.145 H3 YLS 33 YLS H4 H4 H 0 1 N N N N N N 8.236 21.624 25.617 2.721 2.138 1.033 H4 YLS 34 YLS H5 H5 H 0 1 N N N N N N 9.725 18.667 29.152 2.547 -1.106 -2.520 H5 YLS 35 YLS S1 S1 S 0 1 N Y N N N N 9.418 17.831 27.564 4.075 -1.939 -0.855 S1 YLS 36 YLS H7 H7 H 0 1 N N N N N N 6.147 21.212 27.745 3.526 3.378 -1.618 H7 YLS 37 YLS H8 H8 H 0 1 N N N N N N 7.149 22.662 27.399 1.949 3.455 -0.762 H8 YLS 38 YLS H9 H9 H 0 1 N N N N N N 5.556 23.556 25.960 3.790 5.529 -0.688 H9 YLS 39 YLS H10 H10 H 0 1 N N N N N N 4.421 22.411 26.751 2.665 5.188 0.658 H10 YLS 40 YLS H11 H11 H 0 1 N N N N N N 5.996 25.370 29.083 -8.973 -1.497 -0.696 H11 YLS 41 YLS H12 H12 H 0 1 N N N N N N 8.244 25.160 28.058 -6.873 -1.785 0.556 H12 YLS 42 YLS H13 H13 H 0 1 N N N N N N 8.977 24.965 24.635 -4.844 1.021 1.776 H13 YLS 43 YLS H14 H14 H 0 1 N N N N N N 9.328 26.679 25.040 -5.171 -0.723 1.922 H14 YLS 44 YLS H15 H15 H 0 1 N N N N N N 11.973 21.736 26.309 -0.278 -0.048 1.435 H15 YLS 45 YLS H16 H16 H 0 1 N N N N N N 12.849 22.261 29.148 -0.906 -2.492 1.669 H16 YLS 46 YLS H17 H17 H 0 1 N N N N N N 13.023 20.718 28.245 -0.033 -2.801 0.149 H17 YLS 47 YLS H18 H18 H 0 1 N N N N N N 14.336 23.317 27.396 2.020 -1.778 1.187 H18 YLS 48 YLS H19 H19 H 0 1 N N N N N N 15.181 22.670 29.668 0.781 -0.400 2.873 H19 YLS 49 YLS H20 H20 H 0 1 N N N N N N 15.573 21.032 29.045 0.345 -1.895 3.735 H20 YLS 50 YLS H21 H21 H 0 1 N N N N N N 16.438 22.468 28.401 2.051 -1.404 3.614 H21 YLS 51 YLS H22 H22 H 0 1 N N N N N N 15.788 21.783 26.104 1.664 -4.231 1.187 H22 YLS 52 YLS H23 H23 H 0 1 N N N N N N 14.823 20.386 26.691 2.508 -3.709 2.664 H23 YLS 53 YLS H24 H24 H 0 1 N N N N N N 14.061 21.625 25.637 0.774 -4.102 2.723 H24 YLS 54 YLS H25 H25 H 0 1 N N N N N N 4.450 26.687 25.293 -8.183 2.683 -1.053 H25 YLS 55 YLS H26 H26 H 0 1 N N N N N N 6.694 26.477 24.317 -6.087 2.392 0.207 H26 YLS 56 YLS H27 H27 H 0 1 N N N N N N 12.057 24.277 27.686 -1.853 -0.751 -0.934 H27 YLS 57 YLS H28 H28 H 0 1 N N N N N N 10.363 20.100 26.444 2.185 -0.111 0.813 H28 YLS 58 YLS H29 H29 H 0 1 N N N N N N 4.521 21.770 24.274 5.247 5.038 1.279 H29 YLS 59 YLS H30 H30 H 0 1 N N N N N N 8.030 17.078 29.248 5.142 0.191 -2.407 H30 YLS 60 YLS O1 O6 O 0 1 N Y N N N N ? ? ? 5.199 -1.423 -0.157 O1 YLS 61 YLS O2 O7 O 0 1 N Y N N N N ? ? ? 3.044 -2.637 -0.170 O2 YLS 62 YLS O3 O8 O 0 1 N Y N N N N ? ? ? 4.664 -2.975 -1.802 O3 YLS 63 YLS H6 H6 H 0 1 N Y N N N N ? ? ? 5.082 -3.724 -1.355 H6 YLS 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLS O18 C14 DOUB N N 1 YLS C14 N15 SING N N 2 YLS C14 C13 SING N N 3 YLS N15 C16 SING N N 4 YLS O01 C02 DOUB N N 5 YLS C30 C29 DOUB Y N 6 YLS C30 C24 SING Y N 7 YLS C23 C24 SING N N 8 YLS C23 O22 SING N N 9 YLS C29 C27 SING Y N 10 YLS C13 C12 SING N N 11 YLS C13 C17 SING N N 12 YLS C24 C25 DOUB Y N 13 YLS C02 O22 SING N N 14 YLS C02 N03 SING N N 15 YLS C16 C17 SING N N 16 YLS C08 C06 SING N N 17 YLS C12 C11 SING N N 18 YLS N03 C04 SING N N 19 YLS C27 F28 SING N N 20 YLS C27 C26 DOUB Y N 21 YLS N10 C11 SING N N 22 YLS N10 C09 SING N N 23 YLS C04 C09 SING N N 24 YLS C04 C05 SING N N 25 YLS C25 C26 SING Y N 26 YLS C06 C05 SING N N 27 YLS C06 C07 SING N N 28 YLS C11 C19 SING N N 29 YLS C09 O21 DOUB N N 30 YLS C19 O20 SING N N 31 YLS C11 H1 SING N N 32 YLS C12 H2 SING N N 33 YLS C12 H3 SING N N 34 YLS C13 H4 SING N N 35 YLS C19 H5 SING N N 36 YLS C19 S1 SING N N 37 YLS C17 H7 SING N N 38 YLS C17 H8 SING N N 39 YLS C16 H9 SING N N 40 YLS C16 H10 SING N N 41 YLS C26 H11 SING N N 42 YLS C25 H12 SING N N 43 YLS C23 H13 SING N N 44 YLS C23 H14 SING N N 45 YLS C04 H15 SING N N 46 YLS C05 H16 SING N N 47 YLS C05 H17 SING N N 48 YLS C06 H18 SING N N 49 YLS C07 H19 SING N N 50 YLS C07 H20 SING N N 51 YLS C07 H21 SING N N 52 YLS C08 H22 SING N N 53 YLS C08 H23 SING N N 54 YLS C08 H24 SING N N 55 YLS C29 H25 SING N N 56 YLS C30 H26 SING N N 57 YLS N03 H27 SING N N 58 YLS N10 H28 SING N N 59 YLS N15 H29 SING N N 60 YLS O20 H30 SING N N 61 YLS S1 O1 DOUB N N 62 YLS S1 O2 DOUB N N 63 YLS S1 O3 SING N N 64 YLS O3 H6 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLS SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCc1ccc(F)cc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YLS InChI InChI 1.03 "InChI=1S/C21H30FN3O8S/c1-12(2)9-16(25-21(29)33-11-13-3-5-15(22)6-4-13)19(27)24-17(20(28)34(30,31)32)10-14-7-8-23-18(14)26/h3-6,12,14,16-17,20,28H,7-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20-/m0/s1" YLS InChIKey InChI 1.03 SXLHHGJXSMBQOQ-VERUCKTNSA-N YLS SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1ccc(F)cc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O" YLS SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1ccc(F)cc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YLS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F" YLS SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YLS "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[(4-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YLS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-2-[(4-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLS "Create component" 2021-03-12 RCSB YLS "Initial release" 2021-03-24 RCSB YLS "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YLS _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #