data_YLV # _chem_comp.id YLV _chem_comp.name "(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-((((perfluorophenyl)methoxy)carbonyl)amino)pentanamido)-3-((R)-2-oxo-2,3-dihydro-1H-pyrrol-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 F5 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 573.488 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M04 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLV C01 C1 C 0 1 N N R N N N 9.086 18.463 28.265 4.575 0.711 1.966 C01 YLV 1 YLV C03 C2 C 0 1 N N S N N N 8.823 19.858 27.672 4.122 -0.467 1.101 C03 YLV 2 YLV C04 C3 C 0 1 N N N N N N 7.790 19.809 26.524 5.329 -1.052 0.363 C04 YLV 3 YLV C05 C4 C 0 1 N N R N N N 7.444 21.206 25.938 4.893 -2.286 -0.429 C05 YLV 4 YLV C06 C5 C 0 1 N N N N N N 6.477 21.027 24.652 6.072 -2.891 -1.164 C06 YLV 5 YLV C08 C6 C 0 1 N N N N N N 5.521 22.568 26.172 5.260 -4.407 0.300 C08 YLV 6 YLV C09 C7 C 0 1 N N N N N N 6.795 21.954 26.860 4.450 -3.391 0.507 C09 YLV 7 YLV C12 C8 C 0 1 N N N N N N 10.539 21.742 27.629 1.818 -0.050 0.428 C12 YLV 8 YLV C13 C9 C 0 1 N N S N N N 11.919 22.184 27.144 0.798 0.426 -0.575 C13 YLV 9 YLV C14 C10 C 0 1 N N N N N N 12.947 21.906 28.261 1.052 1.899 -0.901 C14 YLV 10 YLV C15 C11 C 0 1 N N N N N N 14.396 22.285 27.803 0.098 2.348 -2.009 C15 YLV 11 YLV C16 C12 C 0 1 N N N N N N 14.896 21.276 26.703 0.265 3.849 -2.249 C16 YLV 12 YLV C17 C13 C 0 1 N N N N N N 15.346 22.334 29.002 0.418 1.587 -3.297 C17 YLV 13 YLV C19 C14 C 0 1 N N N N N N 10.932 24.071 25.856 -1.608 0.143 -0.832 C19 YLV 14 YLV C21 C15 C 0 1 N N N N N N 11.378 25.999 24.591 -3.940 -0.133 -1.257 C21 YLV 15 YLV C22 C16 C 0 1 Y N N N N N 11.320 27.559 24.589 -5.236 -0.276 -0.501 C22 YLV 16 YLV C23 C17 C 0 1 Y N N N N N 12.258 28.258 25.321 -5.970 0.849 -0.167 C23 YLV 17 YLV C25 C18 C 0 1 Y N N N N N 12.238 29.660 25.341 -7.162 0.719 0.528 C25 YLV 18 YLV C27 C19 C 0 1 Y N N N N N 11.269 30.351 24.620 -7.619 -0.539 0.888 C27 YLV 19 YLV C29 C20 C 0 1 Y N N N N N 10.326 29.652 23.879 -6.885 -1.665 0.553 C29 YLV 20 YLV C31 C21 C 0 1 Y N N N N N 10.348 28.253 23.859 -5.695 -1.533 -0.147 C31 YLV 21 YLV F24 F1 F 0 1 N N N N N N 13.195 27.567 26.020 -5.523 2.075 -0.517 F24 YLV 22 YLV F26 F2 F 0 1 N N N N N N 13.162 30.346 26.067 -7.877 1.817 0.855 F26 YLV 23 YLV F28 F3 F 0 1 N N N N N N 11.246 31.717 24.638 -8.781 -0.667 1.566 F28 YLV 24 YLV F30 F4 F 0 1 N N N N N N 9.379 30.334 23.166 -7.330 -2.891 0.903 F30 YLV 25 YLV F32 F5 F 0 1 N N N N N N 9.422 27.583 23.127 -4.979 -2.630 -0.475 F32 YLV 26 YLV N07 N1 N 0 1 N N N N N N 5.374 21.818 24.797 6.210 -4.137 -0.668 N07 YLV 27 YLV N11 N2 N 0 1 N N N N N N 10.115 20.371 27.255 3.131 -0.005 0.126 N11 YLV 28 YLV N18 N3 N 0 1 N N N N N N 11.898 23.593 26.831 -0.546 0.275 -0.013 N18 YLV 29 YLV O02 O1 O 0 1 N N N N N N 9.937 18.634 29.374 3.473 1.183 2.743 O02 YLV 30 YLV O10 O2 O 0 1 N N N N N N 6.692 20.329 23.710 6.751 -2.365 -2.021 O10 YLV 31 YLV O20 O3 O 0 1 N N N N N N 10.714 25.469 25.736 -2.844 0.005 -0.315 O20 YLV 32 YLV O33 O4 O 0 1 N N N N N N 10.344 23.299 25.163 -1.451 0.149 -2.036 O33 YLV 33 YLV O34 O5 O 0 1 N N N N N N 9.839 22.487 28.259 1.457 -0.473 1.506 O34 YLV 34 YLV S1 S1 S 0 1 N Y N N N N 9.539 17.823 27.537 5.179 2.048 0.898 S1 YLV 35 YLV H2 H2 H 0 1 N N N N N N 8.117 18.098 28.636 5.376 0.387 2.630 H2 YLV 36 YLV H3 H3 H 0 1 N N N N N N 8.418 20.499 28.469 3.678 -1.234 1.735 H3 YLV 37 YLV H4 H4 H 0 1 N N N N N N 6.865 19.354 26.908 5.733 -0.305 -0.320 H4 YLV 38 YLV H5 H5 H 0 1 N N N N N N 8.198 19.184 25.716 6.094 -1.335 1.086 H5 YLV 39 YLV H6 H6 H 0 1 N N N N N N 8.373 21.690 25.601 4.094 -2.030 -1.126 H6 YLV 40 YLV H7 H7 H 0 1 N N N N N N 4.880 23.344 26.563 5.191 -5.348 0.826 H7 YLV 41 YLV H8 H8 H 0 1 N N N N N N 7.098 22.103 27.886 3.629 -3.352 1.209 H8 YLV 42 YLV H9 H9 H 0 1 N N N N N N 12.193 21.599 26.253 0.880 -0.168 -1.485 H9 YLV 43 YLV H10 H10 H 0 1 N N N N N N 12.684 22.501 29.148 0.884 2.503 -0.010 H10 YLV 44 YLV H11 H11 H 0 1 N N N N N N 12.919 20.836 28.516 2.082 2.024 -1.236 H11 YLV 45 YLV H12 H12 H 0 1 N N N N N N 14.357 23.287 27.350 -0.930 2.140 -1.710 H12 YLV 46 YLV H13 H13 H 0 1 N N N N N N 15.914 21.551 26.388 1.292 4.057 -2.549 H13 YLV 47 YLV H14 H14 H 0 1 N N N N N N 14.903 20.257 27.116 -0.415 4.169 -3.039 H14 YLV 48 YLV H15 H15 H 0 1 N N N N N N 14.221 21.315 25.835 0.037 4.392 -1.332 H15 YLV 49 YLV H16 H16 H 0 1 N N N N N N 14.962 23.048 29.746 0.299 0.517 -3.126 H16 YLV 50 YLV H17 H17 H 0 1 N N N N N N 15.415 21.334 29.456 -0.262 1.906 -4.087 H17 YLV 51 YLV H18 H18 H 0 1 N N N N N N 16.343 22.655 28.667 1.445 1.794 -3.597 H18 YLV 52 YLV H19 H19 H 0 1 N N N N N N 10.889 25.619 23.682 -3.780 -1.016 -1.874 H19 YLV 53 YLV H20 H20 H 0 1 N N N N N N 12.430 25.677 24.603 -3.986 0.751 -1.893 H20 YLV 54 YLV H21 H21 H 0 1 N N N N N N 4.616 21.904 24.151 6.891 -4.765 -0.954 H21 YLV 55 YLV H22 H22 H 0 1 N N N N N N 10.725 19.795 26.711 3.420 0.334 -0.736 H22 YLV 56 YLV H23 H23 H 0 1 N N N N N N 12.533 24.225 27.275 -0.672 0.270 0.949 H23 YLV 57 YLV H24 H24 H 0 1 N N N N N N 10.121 17.788 29.766 2.722 1.488 2.216 H24 YLV 58 YLV O1 O6 O 0 1 N Y N N N N ? ? ? 6.390 1.667 0.259 O1 YLV 59 YLV O2 O7 O 0 1 N Y N N N N ? ? ? 4.108 2.618 0.159 O2 YLV 60 YLV O3 O8 O 0 1 N Y N N N N ? ? ? 5.595 3.147 1.865 O3 YLV 61 YLV H1 H1 H 0 1 N Y N N N N ? ? ? 5.944 3.939 1.434 H1 YLV 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLV F32 C31 SING N N 1 YLV F30 C29 SING N N 2 YLV O10 C06 DOUB N N 3 YLV C31 C29 DOUB Y N 4 YLV C31 C22 SING Y N 5 YLV C29 C27 SING Y N 6 YLV C22 C21 SING N N 7 YLV C22 C23 DOUB Y N 8 YLV C21 O20 SING N N 9 YLV C27 F28 SING N N 10 YLV C27 C25 DOUB Y N 11 YLV C06 N07 SING N N 12 YLV C06 C05 SING N N 13 YLV N07 C08 SING N N 14 YLV O33 C19 DOUB N N 15 YLV C23 C25 SING Y N 16 YLV C23 F24 SING N N 17 YLV C25 F26 SING N N 18 YLV O20 C19 SING N N 19 YLV C19 N18 SING N N 20 YLV C05 C04 SING N N 21 YLV C05 C09 SING N N 22 YLV C08 C09 DOUB N N 23 YLV C04 C03 SING N N 24 YLV C16 C15 SING N N 25 YLV N18 C13 SING N N 26 YLV C13 C12 SING N N 27 YLV C13 C14 SING N N 28 YLV N11 C12 SING N N 29 YLV N11 C03 SING N N 30 YLV C12 O34 DOUB N N 31 YLV C03 C01 SING N N 32 YLV C15 C14 SING N N 33 YLV C15 C17 SING N N 34 YLV C01 O02 SING N N 35 YLV C01 S1 SING N N 36 YLV C01 H2 SING N N 37 YLV C03 H3 SING N N 38 YLV C04 H4 SING N N 39 YLV C04 H5 SING N N 40 YLV C05 H6 SING N N 41 YLV C08 H7 SING N N 42 YLV C09 H8 SING N N 43 YLV C13 H9 SING N N 44 YLV C14 H10 SING N N 45 YLV C14 H11 SING N N 46 YLV C15 H12 SING N N 47 YLV C16 H13 SING N N 48 YLV C16 H14 SING N N 49 YLV C16 H15 SING N N 50 YLV C17 H16 SING N N 51 YLV C17 H17 SING N N 52 YLV C17 H18 SING N N 53 YLV C21 H19 SING N N 54 YLV C21 H20 SING N N 55 YLV N07 H21 SING N N 56 YLV N11 H22 SING N N 57 YLV N18 H23 SING N N 58 YLV O02 H24 SING N N 59 YLV S1 O1 DOUB N N 60 YLV S1 O2 DOUB N N 61 YLV S1 O3 SING N N 62 YLV O3 H1 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLV SMILES ACDLabs 12.01 "O=C1NC=CC1CC(NC(=O)C(CC(C)C)NC(=O)OCc1c(F)c(F)c(F)c(F)c1F)C(O)S(=O)(=O)O" YLV InChI InChI 1.03 "InChI=1S/C21H24F5N3O8S/c1-8(2)5-11(29-21(33)37-7-10-13(22)15(24)17(26)16(25)14(10)23)19(31)28-12(20(32)38(34,35)36)6-9-3-4-27-18(9)30/h3-4,8-9,11-12,20,32H,5-7H2,1-2H3,(H,27,30)(H,28,31)(H,29,33)(H,34,35,36)/t9-,11-,12-,20+/m0/s1" YLV InChIKey InChI 1.03 VNVWDEQECYLCMA-AYUSFXAWSA-N YLV SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1c(F)c(F)c(F)c(F)c1F)C(=O)N[C@@H](C[C@@H]2C=CNC2=O)[C@H](O)[S](O)(=O)=O" YLV SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1c(F)c(F)c(F)c(F)c1F)C(=O)N[CH](C[CH]2C=CNC2=O)[CH](O)[S](O)(=O)=O" YLV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1C=CNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2c(c(c(c(c2F)F)F)F)F" YLV SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1C=CNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2c(c(c(c(c2F)F)F)F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YLV "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-1-hydroxy-3-[(3R)-2-oxo-2,3-dihydro-1H-pyrrol-3-yl]-2-[(N-{[(pentafluorophenyl)methoxy]carbonyl}-L-leucyl)amino]propane-1-sulfonic acid" YLV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[[2,3,4,5,6-pentakis(fluoranyl)phenyl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-1,3-dihydropyrrol-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLV "Create component" 2021-03-12 RCSB YLV "Initial release" 2021-03-24 RCSB YLV "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YLV _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C01 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #