data_YLX
#
_chem_comp.id YLX
_chem_comp.name Buspirone
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H31 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Buspirone
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-02-09
_chem_comp.pdbx_modified_date 2024-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 385.503
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YLX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FYX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YLX C1 C1 C 0 1 N N N N N N 137.100 127.130 167.889 5.628 1.388 0.695 C1 YLX 1
YLX C2 C2 C 0 1 N N N N N N 138.386 127.780 167.337 6.120 0.041 0.170 C2 YLX 2
YLX C3 C3 C 0 1 N N N N N N 139.484 126.702 167.173 7.631 -0.098 0.403 C3 YLX 3
YLX C4 C4 C 0 1 N N N N N N 139.061 125.936 165.920 7.821 -1.329 1.315 C4 YLX 4
YLX N N1 N 0 1 N N N N N N 136.382 129.375 168.570 3.626 0.945 -0.707 N YLX 5
YLX C C5 C 0 1 N N N N N N 136.042 128.196 167.933 4.166 1.544 0.365 C YLX 6
YLX O O1 O 0 1 N N N N N N 134.945 128.060 167.409 3.464 2.225 1.081 O YLX 7
YLX C10 C6 C 0 1 N N N N N N 135.160 131.456 167.887 1.384 0.071 -0.270 C10 YLX 8
YLX C11 C7 C 0 1 N N N N N N 135.615 132.814 168.453 -0.103 0.286 -0.558 C11 YLX 9
YLX C12 C8 C 0 1 N N N N N N 135.714 133.912 167.397 -0.922 -0.794 0.154 C12 YLX 10
YLX C13 C9 C 0 1 N N N N N N 136.251 134.272 165.003 -3.147 -1.732 0.342 C13 YLX 11
YLX C14 C10 C 0 1 N N N N N N 137.439 135.015 164.393 -4.614 -1.514 -0.034 C14 YLX 12
YLX C15 C11 C 0 1 Y N N N N N 138.688 137.064 164.980 -6.437 -0.068 0.310 C15 YLX 13
YLX C16 C12 C 0 1 Y N N N N N 139.647 138.272 163.327 -8.382 -0.817 -0.666 C16 YLX 14
YLX C17 C13 C 0 1 Y N N N N N 140.244 139.100 164.247 -9.040 0.308 -0.192 C17 YLX 15
YLX C18 C14 C 0 1 Y N N N N N 139.947 138.850 165.562 -8.322 1.231 0.552 C18 YLX 16
YLX C19 C15 C 0 1 N N N N N N 138.414 135.271 166.612 -4.295 0.881 0.106 C19 YLX 17
YLX C20 C16 C 0 1 N N N N N N 138.045 133.795 166.610 -2.827 0.664 0.482 C20 YLX 18
YLX C5 C17 C 0 1 N N N N N N 138.426 127.048 164.976 6.547 -2.178 1.078 C5 YLX 19
YLX C6 C18 C 0 1 N N N N N N 138.241 128.297 165.876 5.439 -1.104 0.940 C6 YLX 20
YLX C7 C19 C 0 1 N N N N N N 138.799 128.893 168.324 5.806 -0.075 -1.321 C7 YLX 21
YLX C8 C20 C 0 1 N N N N N N 137.693 129.739 168.895 4.334 0.164 -1.537 C8 YLX 22
YLX C9 C21 C 0 1 N N N N N N 135.294 130.315 168.906 2.202 1.150 -0.982 C9 YLX 23
YLX N1 N2 N 0 1 N N N N N N 136.618 133.598 166.274 -2.350 -0.587 -0.123 N1 YLX 24
YLX N2 N3 N 0 1 N N N N N N 138.034 135.939 165.364 -5.092 -0.263 0.571 N2 YLX 25
YLX N3 N4 N 0 1 Y N N N N N 138.870 137.238 163.665 -7.096 -0.972 -0.399 N3 YLX 26
YLX N4 N5 N 0 1 Y N N N N N 139.168 137.841 165.960 -7.037 1.015 0.782 N4 YLX 27
YLX O1 O2 O 0 1 N N N N N N 137.916 130.691 169.630 3.778 -0.359 -2.478 O1 YLX 28
YLX H1 H1 H 0 1 N N N N N N 136.780 126.310 167.230 5.763 1.429 1.776 H1 YLX 29
YLX H2 H2 H 0 1 N N N N N N 137.281 126.738 168.901 6.195 2.193 0.226 H2 YLX 30
YLX H3 H3 H 0 1 N N N N N N 139.513 126.036 168.048 8.144 -0.253 -0.546 H3 YLX 31
YLX H4 H4 H 0 1 N N N N N N 140.471 127.167 167.033 8.017 0.795 0.894 H4 YLX 32
YLX H5 H5 H 0 1 N N N N N N 138.318 125.164 166.168 8.711 -1.886 1.024 H5 YLX 33
YLX H6 H6 H 0 1 N N N N N N 139.931 125.466 165.438 7.889 -1.023 2.359 H6 YLX 34
YLX H7 H7 H 0 1 N N N N N N 134.105 131.536 167.585 1.559 0.131 0.804 H7 YLX 35
YLX H8 H8 H 0 1 N N N N N N 135.776 131.217 167.008 1.686 -0.912 -0.633 H8 YLX 36
YLX H9 H9 H 0 1 N N N N N N 136.605 132.685 168.915 -0.405 1.268 -0.195 H9 YLX 37
YLX H10 H10 H 0 1 N N N N N N 134.892 133.132 169.219 -0.278 0.225 -1.632 H10 YLX 38
YLX H11 H11 H 0 1 N N N N N N 136.078 134.828 167.886 -0.620 -1.776 -0.209 H11 YLX 39
YLX H12 H12 H 0 1 N N N N N N 134.708 134.089 166.989 -0.747 -0.734 1.228 H12 YLX 40
YLX H13 H13 H 0 1 N N N N N N 135.444 134.993 165.202 -3.058 -1.820 1.425 H13 YLX 41
YLX H14 H14 H 0 1 N N N N N N 135.898 133.515 164.287 -2.782 -2.644 -0.129 H14 YLX 42
YLX H15 H15 H 0 1 N N N N N N 138.199 134.284 164.080 -4.706 -1.452 -1.118 H15 YLX 43
YLX H16 H16 H 0 1 N N N N N N 137.096 135.585 163.517 -5.212 -2.348 0.335 H16 YLX 44
YLX H17 H17 H 0 1 N N N N N N 139.814 138.466 162.278 -8.914 -1.557 -1.245 H17 YLX 45
YLX H18 H18 H 0 1 N N N N N N 140.907 139.900 163.952 -10.089 0.460 -0.395 H18 YLX 46
YLX H19 H19 H 0 1 N N N N N N 140.364 139.503 166.315 -8.804 2.118 0.935 H19 YLX 47
YLX H20 H20 H 0 1 N N N N N N 139.502 135.364 166.746 -4.660 1.794 0.577 H20 YLX 48
YLX H21 H21 H 0 1 N N N N N N 137.898 135.764 167.449 -4.383 0.971 -0.977 H21 YLX 49
YLX H22 H22 H 0 1 N N N N N N 138.239 133.376 167.608 -2.230 1.497 0.113 H22 YLX 50
YLX H23 H23 H 0 1 N N N N N N 138.664 133.272 165.866 -2.735 0.603 1.566 H23 YLX 51
YLX H24 H24 H 0 1 N N N N N N 137.456 126.710 164.583 6.637 -2.760 0.161 H24 YLX 52
YLX H25 H25 H 0 1 N N N N N N 139.103 127.274 164.139 6.351 -2.827 1.931 H25 YLX 53
YLX H26 H26 H 0 1 N N N N N N 139.014 129.048 165.655 5.114 -0.762 1.923 H26 YLX 54
YLX H27 H27 H 0 1 N N N N N N 137.246 128.739 165.721 4.595 -1.496 0.372 H27 YLX 55
YLX H28 H28 H 0 1 N N N N N N 139.320 128.414 169.166 6.380 0.669 -1.873 H28 YLX 56
YLX H29 H29 H 0 1 N N N N N N 139.493 129.564 167.797 6.068 -1.073 -1.672 H29 YLX 57
YLX H30 H30 H 0 1 N N N N N N 135.498 130.749 169.896 1.900 2.133 -0.619 H30 YLX 58
YLX H31 H31 H 0 1 N N N N N N 134.346 129.759 168.938 2.027 1.090 -2.056 H31 YLX 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YLX C16 N3 DOUB Y N 1
YLX C16 C17 SING Y N 2
YLX N3 C15 SING Y N 3
YLX C17 C18 DOUB Y N 4
YLX C14 C13 SING N N 5
YLX C14 N2 SING N N 6
YLX C5 C6 SING N N 7
YLX C5 C4 SING N N 8
YLX C15 N2 SING N N 9
YLX C15 N4 DOUB Y N 10
YLX C13 N1 SING N N 11
YLX N2 C19 SING N N 12
YLX C18 N4 SING Y N 13
YLX C6 C2 SING N N 14
YLX C4 C3 SING N N 15
YLX N1 C20 SING N N 16
YLX N1 C12 SING N N 17
YLX C20 C19 SING N N 18
YLX C3 C2 SING N N 19
YLX C2 C1 SING N N 20
YLX C2 C7 SING N N 21
YLX C12 C11 SING N N 22
YLX O C DOUB N N 23
YLX C10 C11 SING N N 24
YLX C10 C9 SING N N 25
YLX C1 C SING N N 26
YLX C N SING N N 27
YLX C7 C8 SING N N 28
YLX N C8 SING N N 29
YLX N C9 SING N N 30
YLX C8 O1 DOUB N N 31
YLX C1 H1 SING N N 32
YLX C1 H2 SING N N 33
YLX C3 H3 SING N N 34
YLX C3 H4 SING N N 35
YLX C4 H5 SING N N 36
YLX C4 H6 SING N N 37
YLX C10 H7 SING N N 38
YLX C10 H8 SING N N 39
YLX C11 H9 SING N N 40
YLX C11 H10 SING N N 41
YLX C12 H11 SING N N 42
YLX C12 H12 SING N N 43
YLX C13 H13 SING N N 44
YLX C13 H14 SING N N 45
YLX C14 H15 SING N N 46
YLX C14 H16 SING N N 47
YLX C16 H17 SING N N 48
YLX C17 H18 SING N N 49
YLX C18 H19 SING N N 50
YLX C19 H20 SING N N 51
YLX C19 H21 SING N N 52
YLX C20 H22 SING N N 53
YLX C20 H23 SING N N 54
YLX C5 H24 SING N N 55
YLX C5 H25 SING N N 56
YLX C6 H26 SING N N 57
YLX C6 H27 SING N N 58
YLX C7 H28 SING N N 59
YLX C7 H29 SING N N 60
YLX C9 H30 SING N N 61
YLX C9 H31 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YLX SMILES ACDLabs 12.01 "O=C1CC2(CCCC2)CC(=O)N1CCCCN1CCN(CC1)c1ncccn1"
YLX InChI InChI 1.06 "InChI=1S/C21H31N5O2/c27-18-16-21(6-1-2-7-21)17-19(28)26(18)11-4-3-10-24-12-14-25(15-13-24)20-22-8-5-9-23-20/h5,8-9H,1-4,6-7,10-17H2"
YLX InChIKey InChI 1.06 QWCRAEMEVRGPNT-UHFFFAOYSA-N
YLX SMILES_CANONICAL CACTVS 3.385 "O=C1CC2(CCCC2)CC(=O)N1CCCCN3CCN(CC3)c4ncccn4"
YLX SMILES CACTVS 3.385 "O=C1CC2(CCCC2)CC(=O)N1CCCCN3CCN(CC3)c4ncccn4"
YLX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1)N2CCN(CC2)CCCCN3C(=O)CC4(CCCC4)CC3=O"
YLX SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1)N2CCN(CC2)CCCCN3C(=O)CC4(CCCC4)CC3=O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YLX "SYSTEMATIC NAME" ACDLabs 12.01 "8-{4-[4-(pyrimidin-2-yl)piperazin-1-yl]butyl}-8-azaspiro[4.5]decane-7,9-dione"
YLX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-[4-(4-pyrimidin-2-ylpiperazin-1-yl)butyl]-8-azaspiro[4.5]decane-7,9-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YLX "Create component" 2023-02-09 RCSB
YLX "Modify name" 2024-03-15 RCSB
YLX "Initial release" 2024-05-15 RCSB
#