data_YM0
# 
_chem_comp.id                                    YM0 
_chem_comp.name                                  3-azanylpyrazine-2,6-dicarbonitrile 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H3 N5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-05 
_chem_comp.pdbx_modified_date                    2024-11-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        145.122 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YM0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8RBC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YM0 C1 C1 C 0 1 Y N N N N N 4.878 29.403 -6.660  -1.085 0.981  0.002  C1 YM0 1  
YM0 C2 C2 C 0 1 Y N N N N N 4.899 30.633 -7.369  -0.843 -0.407 0.001  C2 YM0 2  
YM0 C3 C3 C 0 1 Y N N N N N 3.605 29.697 -9.019  1.419  0.000  0.000  C3 YM0 3  
YM0 C4 C4 C 0 1 Y N N N N N 3.595 28.499 -8.333  1.174  1.378  0.001  C4 YM0 4  
YM0 C5 C5 C 0 1 N N N N N N 5.580 31.803 -6.857  -1.939 -1.328 0.001  C5 YM0 5  
YM0 C6 C6 C 0 1 N N N N N N 2.938 29.867 -10.294 2.766  -0.486 -0.001 C6 YM0 6  
YM0 N1 N1 N 0 1 Y N N N N N 4.260 30.772 -8.546  0.405  -0.858 0.000  N1 YM0 7  
YM0 N2 N2 N 0 1 Y N N N N N 4.219 28.349 -7.163  -0.065 1.831  0.002  N2 YM0 8  
YM0 N3 N3 N 0 1 N N N N N N 5.509 29.263 -5.483  -2.381 1.456  -0.003 N3 YM0 9  
YM0 N4 N4 N 0 1 N N N N N N 6.161 32.714 -6.473  -2.809 -2.059 0.000  N4 YM0 10 
YM0 N5 N5 N 0 1 N N N N N N 2.438 29.991 -11.318 3.835  -0.871 -0.001 N5 YM0 11 
YM0 H1 H1 H 0 1 N N N N N N 3.066 27.658 -8.756  2.001  2.072  0.001  H1 YM0 12 
YM0 H3 H2 H 0 1 N N N N N N 5.379 28.331 -5.144  -3.126 0.834  -0.007 H3 YM0 13 
YM0 H2 H3 H 0 1 N N N N N N 6.486 29.440 -5.605  -2.547 2.412  -0.003 H2 YM0 14 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YM0 C1 C2 DOUB Y N 1  
YM0 C1 N2 SING Y N 2  
YM0 C1 N3 SING N N 3  
YM0 C2 N1 SING Y N 4  
YM0 C2 C5 SING N N 5  
YM0 N1 C3 DOUB Y N 6  
YM0 C3 C4 SING Y N 7  
YM0 C3 C6 SING N N 8  
YM0 C4 N2 DOUB Y N 9  
YM0 C5 N4 TRIP N N 10 
YM0 C6 N5 TRIP N N 11 
YM0 C4 H1 SING N N 12 
YM0 N3 H3 SING N N 13 
YM0 N3 H2 SING N N 14 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YM0 InChI            InChI                1.06  "InChI=1S/C6H3N5/c7-1-4-3-10-6(9)5(2-8)11-4/h3H,(H2,9,10)" 
YM0 InChIKey         InChI                1.06  SVUGJCIZAIHMMN-UHFFFAOYSA-N                                
YM0 SMILES_CANONICAL CACTVS               3.385 "Nc1ncc(nc1C#N)C#N"                                        
YM0 SMILES           CACTVS               3.385 "Nc1ncc(nc1C#N)C#N"                                        
YM0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(nc(c(n1)N)C#N)C#N"                                    
YM0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(nc(c(n1)N)C#N)C#N"                                    
# 
_pdbx_chem_comp_identifier.comp_id           YM0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        3-azanylpyrazine-2,6-dicarbonitrile 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YM0 "Create component" 2023-12-05 PDBE 
YM0 "Modify PCM"       2024-09-27 PDBE 
YM0 "Initial release"  2024-11-27 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YM0 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#