data_YM2 # _chem_comp.id YM2 _chem_comp.name "1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H30 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-06 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.509 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YM2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CDU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YM2 CAA CAA C 0 1 N N N 95.132 260.814 105.004 11.865 0.005 -2.252 CAA YM2 1 YM2 CAM CAM C 0 1 N N N 96.202 261.665 104.317 10.354 -0.162 -2.073 CAM YM2 2 YM2 OAV OAV O 0 1 N N N 97.436 261.520 105.023 9.960 0.388 -0.815 OAV YM2 3 YM2 NAT NAT N 0 1 N N N 98.539 261.377 104.074 8.573 0.284 -0.550 NAT YM2 4 YM2 CAD CAD C 0 1 N N N 99.676 262.020 104.374 8.090 0.746 0.558 CAD YM2 5 YM2 CAY CAY C 0 1 Y N N 100.706 261.863 103.454 6.644 0.637 0.834 CAY YM2 6 YM2 CAJ CAJ C 0 1 Y N N 100.518 261.084 102.319 6.120 1.135 2.030 CAJ YM2 7 YM2 CAL CAL C 0 1 Y N N 101.565 260.916 101.420 4.770 1.032 2.283 CAL YM2 8 YM2 CAI CAI C 0 1 Y N N 101.935 262.474 103.678 5.795 0.041 -0.102 CAI YM2 9 YM2 CAK CAK C 0 1 Y N N 102.985 262.294 102.785 4.446 -0.058 0.160 CAK YM2 10 YM2 CAZ CAZ C 0 1 Y N N 102.804 261.499 101.659 3.930 0.433 1.353 CAZ YM2 11 YM2 OAW OAW O 0 1 N N N 103.871 261.096 100.918 2.600 0.333 1.607 OAW YM2 12 YM2 CAN CAN C 0 1 N N N 105.079 261.771 101.277 1.794 -0.294 0.607 CAN YM2 13 YM2 CAO CAO C 0 1 N N N 106.144 261.404 100.244 0.335 -0.315 1.068 CAO YM2 14 YM2 CBB CBB C 0 1 N N S 107.410 262.212 100.527 -0.528 -0.986 -0.003 CBB YM2 15 YM2 CAB CAB C 0 1 N N N 108.139 261.599 101.724 -0.125 -2.455 -0.136 CAB YM2 16 YM2 CAP CAP C 0 1 N N N 108.317 262.135 99.299 -2.002 -0.896 0.400 CAP YM2 17 YM2 CAQ CAQ C 0 1 N N N 109.329 263.280 99.360 -2.873 -1.454 -0.726 CAQ YM2 18 YM2 NBC NBC N 0 1 N N N 110.223 263.259 98.181 -4.284 -1.369 -0.340 NBC YM2 19 YM2 CAX CAX C 0 1 N N N 110.516 264.287 97.387 -5.093 -0.329 -0.582 CAX YM2 20 YM2 OAC OAC O 0 1 N N N 110.035 265.409 97.540 -4.727 0.675 -1.162 OAC YM2 21 YM2 CAR CAR C 0 1 N N N 110.788 262.032 97.582 -5.039 -2.413 0.368 CAR YM2 22 YM2 CAS CAS C 0 1 N N N 111.912 262.618 96.728 -6.450 -1.812 0.517 CAS YM2 23 YM2 NBD NBD N 0 1 N N N 111.391 263.972 96.432 -6.342 -0.495 -0.128 NBD YM2 24 YM2 CBA CBA C 0 1 Y N N 111.866 264.755 95.465 -7.377 0.433 -0.249 CBA YM2 25 YM2 CAG CAG C 0 1 Y N N 112.885 264.287 94.642 -7.169 1.657 -0.884 CAG YM2 26 YM2 CAE CAE C 0 1 Y N N 113.453 265.117 93.682 -8.218 2.547 -0.983 CAE YM2 27 YM2 NAU NAU N 0 1 Y N N 112.998 266.433 93.540 -9.404 2.253 -0.486 NAU YM2 28 YM2 CAF CAF C 0 1 Y N N 111.992 266.910 94.389 -9.641 1.105 0.122 CAF YM2 29 YM2 CAH CAH C 0 1 Y N N 111.439 266.073 95.351 -8.646 0.159 0.257 CAH YM2 30 YM2 HAA1 HAA1 H 0 0 N N N 94.178 260.920 104.467 12.119 1.065 -2.224 HAA1 YM2 31 YM2 HAA2 HAA2 H 0 0 N N N 95.442 259.759 104.996 12.386 -0.515 -1.449 HAA2 YM2 32 YM2 HAA3 HAA3 H 0 0 N N N 95.007 261.152 106.043 12.165 -0.415 -3.212 HAA3 YM2 33 YM2 HAM1 HAM1 H 0 0 N N N 96.330 261.328 103.278 9.833 0.358 -2.877 HAM1 YM2 34 YM2 HAM2 HAM2 H 0 0 N N N 95.894 262.721 104.325 10.100 -1.222 -2.102 HAM2 YM2 35 YM2 HAD1 HAD1 H 0 0 N N N 99.784 262.618 105.267 8.744 1.211 1.281 HAD1 YM2 36 YM2 HAJ HAJ H 0 1 N N N 99.564 260.612 102.136 6.773 1.600 2.754 HAJ YM2 37 YM2 HAI HAI H 0 1 N N N 102.075 263.093 104.552 6.196 -0.341 -1.029 HAI YM2 38 YM2 HAL HAL H 0 1 N N N 101.414 260.327 100.527 4.364 1.416 3.207 HAL YM2 39 YM2 HAK HAK H 0 1 N N N 103.938 262.770 102.965 3.789 -0.518 -0.563 HAK YM2 40 YM2 HAN1 HAN1 H 0 0 N N N 104.915 262.859 101.275 1.872 0.265 -0.326 HAN1 YM2 41 YM2 HAN2 HAN2 H 0 0 N N N 105.403 261.451 102.278 2.139 -1.315 0.449 HAN2 YM2 42 YM2 HAO1 HAO1 H 0 0 N N N 106.369 260.329 100.312 0.256 -0.873 2.000 HAO1 YM2 43 YM2 HAO2 HAO2 H 0 0 N N N 105.775 261.638 99.235 -0.011 0.707 1.226 HAO2 YM2 44 YM2 HBB HBB H 0 1 N N N 107.150 263.260 100.739 -0.381 -0.481 -0.957 HBB YM2 45 YM2 HAB1 HAB1 H 0 0 N N N 109.052 262.176 101.933 -0.272 -2.961 0.819 HAB1 YM2 46 YM2 HAB2 HAB2 H 0 0 N N N 107.481 261.622 102.605 -0.740 -2.933 -0.898 HAB2 YM2 47 YM2 HAB3 HAB3 H 0 0 N N N 108.409 260.557 101.495 0.925 -2.519 -0.423 HAB3 YM2 48 YM2 HAP1 HAP1 H 0 0 N N N 108.849 261.172 99.292 -2.166 -1.476 1.308 HAP1 YM2 49 YM2 HAP2 HAP2 H 0 0 N N N 107.711 262.226 98.386 -2.266 0.146 0.582 HAP2 YM2 50 YM2 HAQ1 HAQ1 H 0 0 N N N 108.788 264.238 99.385 -2.709 -0.875 -1.634 HAQ1 YM2 51 YM2 HAQ2 HAQ2 H 0 0 N N N 109.934 263.177 100.273 -2.609 -2.496 -0.908 HAQ2 YM2 52 YM2 HAR1 HAR1 H 0 0 N N N 111.178 261.349 98.351 -5.073 -3.328 -0.223 HAR1 YM2 53 YM2 HAR2 HAR2 H 0 0 N N N 110.045 261.504 96.966 -4.600 -2.605 1.347 HAR2 YM2 54 YM2 HAS1 HAS1 H 0 0 N N N 112.858 262.666 97.288 -7.185 -2.429 -0.001 HAS1 YM2 55 YM2 HAS2 HAS2 H 0 0 N N N 112.061 262.036 95.807 -6.712 -1.706 1.569 HAS2 YM2 56 YM2 HAG HAG H 0 1 N N N 113.237 263.272 94.749 -6.200 1.904 -1.292 HAG YM2 57 YM2 HAH HAH H 0 1 N N N 110.673 266.449 96.014 -8.848 -0.780 0.751 HAH YM2 58 YM2 HAE HAE H 0 1 N N N 114.244 264.747 93.047 -8.066 3.497 -1.474 HAE YM2 59 YM2 HAF HAF H 0 1 N N N 111.646 267.929 94.296 -10.626 0.903 0.515 HAF YM2 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YM2 CAA CAM SING N N 1 YM2 CAM OAV SING N N 2 YM2 OAV NAT SING N N 3 YM2 NAT CAD DOUB N E 4 YM2 CAD CAY SING N N 5 YM2 CAY CAJ SING Y N 6 YM2 CAY CAI DOUB Y N 7 YM2 CAJ CAL DOUB Y N 8 YM2 CAL CAZ SING Y N 9 YM2 CAI CAK SING Y N 10 YM2 CAK CAZ DOUB Y N 11 YM2 CAZ OAW SING N N 12 YM2 OAW CAN SING N N 13 YM2 CAN CAO SING N N 14 YM2 CAO CBB SING N N 15 YM2 CBB CAB SING N N 16 YM2 CBB CAP SING N N 17 YM2 CAP CAQ SING N N 18 YM2 CAQ NBC SING N N 19 YM2 NBC CAX SING N N 20 YM2 NBC CAR SING N N 21 YM2 CAX OAC DOUB N N 22 YM2 CAX NBD SING N N 23 YM2 CAR CAS SING N N 24 YM2 CAS NBD SING N N 25 YM2 NBD CBA SING N N 26 YM2 CBA CAG DOUB Y N 27 YM2 CBA CAH SING Y N 28 YM2 CAG CAE SING Y N 29 YM2 CAE NAU DOUB Y N 30 YM2 NAU CAF SING Y N 31 YM2 CAF CAH DOUB Y N 32 YM2 CAA HAA1 SING N N 33 YM2 CAA HAA2 SING N N 34 YM2 CAA HAA3 SING N N 35 YM2 CAM HAM1 SING N N 36 YM2 CAM HAM2 SING N N 37 YM2 CAD HAD1 SING N N 38 YM2 CAJ HAJ SING N N 39 YM2 CAI HAI SING N N 40 YM2 CAL HAL SING N N 41 YM2 CAK HAK SING N N 42 YM2 CAN HAN1 SING N N 43 YM2 CAN HAN2 SING N N 44 YM2 CAO HAO1 SING N N 45 YM2 CAO HAO2 SING N N 46 YM2 CBB HBB SING N N 47 YM2 CAB HAB1 SING N N 48 YM2 CAB HAB2 SING N N 49 YM2 CAB HAB3 SING N N 50 YM2 CAP HAP1 SING N N 51 YM2 CAP HAP2 SING N N 52 YM2 CAQ HAQ1 SING N N 53 YM2 CAQ HAQ2 SING N N 54 YM2 CAR HAR1 SING N N 55 YM2 CAR HAR2 SING N N 56 YM2 CAS HAS1 SING N N 57 YM2 CAS HAS2 SING N N 58 YM2 CAG HAG SING N N 59 YM2 CAH HAH SING N N 60 YM2 CAE HAE SING N N 61 YM2 CAF HAF SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YM2 SMILES ACDLabs 12.01 "O=C2N(c1ccncc1)CCN2CCC(CCOc3ccc(\C=N\OCC)cc3)C" YM2 InChI InChI 1.03 "InChI=1S/C23H30N4O3/c1-3-30-25-18-20-4-6-22(7-5-20)29-17-11-19(2)10-14-26-15-16-27(23(26)28)21-8-12-24-13-9-21/h4-9,12-13,18-19H,3,10-11,14-17H2,1-2H3/b25-18+/t19-/m0/s1" YM2 InChIKey InChI 1.03 IRYPPICIQPYQGY-YSRPOPIVSA-N YM2 SMILES_CANONICAL CACTVS 3.385 "CCO\N=C\c1ccc(OCC[C@@H](C)CCN2CCN(C2=O)c3ccncc3)cc1" YM2 SMILES CACTVS 3.385 "CCON=Cc1ccc(OCC[CH](C)CCN2CCN(C2=O)c3ccncc3)cc1" YM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCO/N=C/c1ccc(cc1)OCC[C@@H](C)CCN2CCN(C2=O)c3ccncc3" YM2 SMILES "OpenEye OEToolkits" 1.9.2 "CCON=Cc1ccc(cc1)OCCC(C)CCN2CCN(C2=O)c3ccncc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YM2 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(3S)-5-{4-[(E)-(ethoxyimino)methyl]phenoxy}-3-methylpentyl]-3-(pyridin-4-yl)imidazolidin-2-one" YM2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-[(3S)-5-[4-[(E)-ethoxyiminomethyl]phenoxy]-3-methyl-pentyl]-3-pyridin-4-yl-imidazolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YM2 "Create component" 2013-11-06 EBI YM2 "Initial release" 2014-02-12 RCSB YM2 "Modify descriptor" 2014-09-05 RCSB #