data_YM5
#
_chem_comp.id YM5
_chem_comp.name "(3-{4-[(2S)-2-(AMINOMETHYL)MORPHOLIN-4-YL]-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL}PHENYL)METHANOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H21 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-06
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 339.392
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YM5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2YM5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YM5 N01 N01 N 0 1 N N N 20.247 -5.023 12.946 3.215 3.837 1.170 N01 YM5 1
YM5 C02 C02 C 0 1 N N N 19.902 -4.053 11.966 1.892 3.334 1.561 C02 YM5 2
YM5 C03 C03 C 0 1 N N S 18.425 -3.473 12.011 1.299 2.512 0.414 C03 YM5 3
YM5 C04 C04 C 0 1 N N N 18.264 -2.348 11.040 -0.080 1.987 0.821 C04 YM5 4
YM5 N05 N05 N 0 1 N N N 16.951 -1.851 11.147 -0.677 1.263 -0.311 N05 YM5 5
YM5 C06 C06 C 0 1 Y N N 16.799 -0.678 10.321 -1.904 0.727 0.035 C06 YM5 6
YM5 N07 N07 N 0 1 Y N N 17.895 -0.244 9.629 -2.938 1.516 0.316 N07 YM5 7
YM5 C08 C08 C 0 1 Y N N 17.875 0.865 8.806 -4.111 1.008 0.646 C08 YM5 8
YM5 N09 N09 N 0 1 Y N N 16.749 1.559 8.673 -4.330 -0.288 0.718 N09 YM5 9
YM5 C10 C10 C 0 1 Y N N 15.590 1.181 9.354 -3.355 -1.158 0.453 C10 YM5 10
YM5 N11 N11 N 0 1 Y N N 14.385 1.745 9.346 -3.275 -2.524 0.443 N11 YM5 11
YM5 C12 C12 C 0 1 Y N N 13.525 1.017 10.190 -2.014 -2.923 0.095 C12 YM5 12
YM5 C13 C13 C 0 1 Y N N 14.234 -0.018 10.705 -1.238 -1.834 -0.130 C13 YM5 13
YM5 C14 C14 C 0 1 Y N N 13.723 -0.952 11.620 0.190 -1.830 -0.528 C14 YM5 14
YM5 C15 C15 C 0 1 Y N N 12.419 -1.487 11.430 0.596 -1.143 -1.671 C15 YM5 15
YM5 C16 C16 C 0 1 Y N N 11.900 -2.357 12.331 1.927 -1.143 -2.037 C16 YM5 16
YM5 C17 C17 C 0 1 Y N N 12.644 -2.731 13.490 2.857 -1.822 -1.271 C17 YM5 17
YM5 C18 C18 C 0 1 Y N N 13.941 -2.181 13.697 2.461 -2.505 -0.135 C18 YM5 18
YM5 C19 C19 C 0 1 N N N 14.768 -2.585 14.963 3.481 -3.243 0.694 C19 YM5 19
YM5 O20 O20 O 0 1 N N N 14.913 -1.629 15.993 4.005 -2.367 1.693 O20 YM5 20
YM5 C21 C21 C 0 1 Y N N 14.459 -1.306 12.801 1.133 -2.508 0.243 C21 YM5 21
YM5 C22 C22 C 0 1 Y N N 15.589 0.048 10.200 -2.091 -0.660 0.092 C22 YM5 22
YM5 C23 C23 C 0 1 N N N 16.037 -2.857 10.762 -0.797 2.140 -1.485 C23 YM5 23
YM5 C24 C24 C 0 1 N N N 16.148 -4.018 11.701 0.590 2.663 -1.868 C24 YM5 24
YM5 O25 O25 O 0 1 N N N 17.470 -4.497 11.791 1.167 3.337 -0.746 O25 YM5 25
YM5 H011 H011 H 0 0 N N N 21.196 -5.308 12.813 3.628 4.384 1.911 H011 YM5 26
YM5 H012 H012 H 0 0 N N N 20.142 -4.627 13.858 3.824 3.080 0.897 H012 YM5 27
YM5 H021 H021 H 0 0 N N N 20.594 -3.206 12.080 1.989 2.706 2.446 H021 YM5 28
YM5 H022 H022 H 0 0 N N N 20.047 -4.514 10.978 1.235 4.175 1.782 H022 YM5 29
YM5 H03 H03 H 0 1 N N N 18.278 -3.065 13.022 1.957 1.671 0.192 H03 YM5 30
YM5 H041 H041 H 0 0 N N N 18.983 -1.550 11.274 0.023 1.312 1.671 H041 YM5 31
YM5 H042 H042 H 0 0 N N N 18.441 -2.712 10.017 -0.721 2.825 1.096 H042 YM5 32
YM5 H231 H231 H 0 0 N N N 15.014 -2.455 10.795 -1.217 1.577 -2.318 H231 YM5 33
YM5 H232 H232 H 0 0 N N N 16.267 -3.189 9.739 -1.449 2.980 -1.246 H232 YM5 34
YM5 H15 H15 H 0 1 N N N 11.840 -1.199 10.565 -0.129 -0.613 -2.270 H15 YM5 35
YM5 H21 H21 H 0 1 N N N 15.432 -0.872 12.977 0.826 -3.037 1.133 H21 YM5 36
YM5 H16 H16 H 0 1 N N N 10.915 -2.770 12.170 2.242 -0.612 -2.922 H16 YM5 37
YM5 H17 H17 H 0 1 N N N 12.227 -3.425 14.204 3.898 -1.820 -1.561 H17 YM5 38
YM5 H191 H191 H 0 0 N N N 14.282 -3.469 15.403 3.008 -4.100 1.173 H191 YM5 39
YM5 H192 H192 H 0 0 N N N 15.779 -2.854 14.622 4.291 -3.587 0.051 H192 YM5 40
YM5 H20 H20 H 0 1 N N N 15.433 -1.998 16.697 4.669 -2.776 2.265 H20 YM5 41
YM5 H241 H241 H 0 0 N N N 15.816 -3.700 12.700 1.227 1.827 -2.158 H241 YM5 42
YM5 H242 H242 H 0 0 N N N 15.499 -4.830 11.341 0.499 3.359 -2.703 H242 YM5 43
YM5 H11 H11 H 0 1 N N N 14.130 2.558 8.823 -4.008 -3.124 0.652 H11 YM5 44
YM5 H08 H08 H 0 1 N N N 18.766 1.166 8.275 -4.924 1.683 0.868 H08 YM5 45
YM5 H12 H12 H 0 1 N N N 12.488 1.242 10.391 -1.686 -3.949 0.013 H12 YM5 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YM5 N01 C02 SING N N 1
YM5 C02 C03 SING N N 2
YM5 C03 C04 SING N N 3
YM5 C03 O25 SING N N 4
YM5 C04 N05 SING N N 5
YM5 N05 C06 SING N N 6
YM5 N05 C23 SING N N 7
YM5 C06 N07 SING Y N 8
YM5 C06 C22 DOUB Y N 9
YM5 N07 C08 DOUB Y N 10
YM5 C08 N09 SING Y N 11
YM5 N09 C10 DOUB Y N 12
YM5 C10 N11 SING Y N 13
YM5 C10 C22 SING Y N 14
YM5 N11 C12 SING Y N 15
YM5 C12 C13 DOUB Y N 16
YM5 C13 C14 SING N N 17
YM5 C13 C22 SING Y N 18
YM5 C14 C15 SING Y N 19
YM5 C14 C21 DOUB Y N 20
YM5 C15 C16 DOUB Y N 21
YM5 C16 C17 SING Y N 22
YM5 C17 C18 DOUB Y N 23
YM5 C18 C19 SING N N 24
YM5 C18 C21 SING Y N 25
YM5 C19 O20 SING N N 26
YM5 C23 C24 SING N N 27
YM5 C24 O25 SING N N 28
YM5 N01 H011 SING N N 29
YM5 N01 H012 SING N N 30
YM5 C02 H021 SING N N 31
YM5 C02 H022 SING N N 32
YM5 C03 H03 SING N N 33
YM5 C04 H041 SING N N 34
YM5 C04 H042 SING N N 35
YM5 C23 H231 SING N N 36
YM5 C23 H232 SING N N 37
YM5 C15 H15 SING N N 38
YM5 C21 H21 SING N N 39
YM5 C16 H16 SING N N 40
YM5 C17 H17 SING N N 41
YM5 C19 H191 SING N N 42
YM5 C19 H192 SING N N 43
YM5 O20 H20 SING N N 44
YM5 C24 H241 SING N N 45
YM5 C24 H242 SING N N 46
YM5 N11 H11 SING N N 47
YM5 C08 H08 SING N N 48
YM5 C12 H12 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YM5 SMILES ACDLabs 12.01 "n1cnc4c(c1N2CC(OCC2)CN)c(c3cccc(c3)CO)cn4"
YM5 InChI InChI 1.03 "InChI=1S/C18H21N5O2/c19-7-14-9-23(4-5-25-14)18-16-15(8-20-17(16)21-11-22-18)13-3-1-2-12(6-13)10-24/h1-3,6,8,11,14,24H,4-5,7,9-10,19H2,(H,20,21,22)/t14-/m0/s1"
YM5 InChIKey InChI 1.03 XYTDDDZEIXYDNO-AWEZNQCLSA-N
YM5 SMILES_CANONICAL CACTVS 3.385 "NC[C@H]1CN(CCO1)c2ncnc3[nH]cc(c4cccc(CO)c4)c23"
YM5 SMILES CACTVS 3.385 "NC[CH]1CN(CCO1)c2ncnc3[nH]cc(c4cccc(CO)c4)c23"
YM5 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)c2c[nH]c3c2c(ncn3)N4CCO[C@H](C4)CN)CO"
YM5 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)c2c[nH]c3c2c(ncn3)N4CCOC(C4)CN)CO"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YM5 "SYSTEMATIC NAME" ACDLabs 12.01 "(3-{4-[(2S)-2-(aminomethyl)morpholin-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}phenyl)methanol"
YM5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[3-[4-[(2S)-2-(aminomethyl)morpholin-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl]phenyl]methanol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YM5 "Create component" 2011-06-06 EBI
YM5 "Modify descriptor" 2014-09-05 RCSB
#