data_YM6
#
_chem_comp.id YM6
_chem_comp.name "1-[(2R)-4-(9H-pyrido[4',3':4,5]pyrrolo[2,3-d]pyrimidin-4-yl)morpholin-2-yl]methanamine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-06
_chem_comp.pdbx_modified_date 2023-09-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 284.316
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YM6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2YM6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YM6 N1 N1 N 0 1 Y N N 17.829 -0.476 9.612 -0.035 2.652 -0.109 N1 YM6 1
YM6 C2 C2 C 0 1 Y N N 17.747 0.597 8.849 1.079 3.346 -0.251 C2 YM6 2
YM6 N3 N3 N 0 1 Y N N 16.647 1.328 8.831 2.266 2.780 -0.285 N3 YM6 3
YM6 C4 C4 C 0 1 Y N N 15.587 0.993 9.577 2.398 1.459 -0.175 C4 YM6 4
YM6 C5 C5 C 0 1 Y N N 15.623 -0.152 10.362 1.238 0.681 -0.022 C5 YM6 5
YM6 C6 C6 C 0 1 Y N N 16.828 -0.847 10.428 -0.005 1.327 0.008 C6 YM6 6
YM6 NAA NAA N 0 1 N N N 18.418 -3.279 14.914 -4.146 -2.357 -0.764 NAA YM6 7
YM6 CAB CAB C 0 1 Y N N 12.499 -0.788 12.387 1.801 -3.089 0.277 CAB YM6 8
YM6 CAD CAD C 0 1 Y N N 13.799 -1.046 11.952 1.037 -1.943 0.228 CAD YM6 9
YM6 CAE CAE C 0 1 Y N N 12.360 1.092 11.060 3.769 -1.900 0.029 CAE YM6 10
YM6 CAF CAF C 0 1 N N N 18.292 -2.541 13.646 -2.934 -1.528 -0.815 CAF YM6 11
YM6 CAG CAG C 0 1 N N N 16.111 -3.753 12.621 -3.102 0.081 1.572 CAG YM6 12
YM6 CAH CAH C 0 1 N N N 15.927 -3.009 11.311 -1.847 0.945 1.419 CAH YM6 13
YM6 CAI CAI C 0 1 N N N 18.335 -2.699 11.122 -2.075 0.814 -0.987 CAI YM6 14
YM6 NAJ NAJ N 0 1 Y N N 11.825 0.260 11.941 3.118 -3.035 0.178 NAJ YM6 15
YM6 NAM NAM N 0 1 Y N N 14.395 1.575 9.721 3.486 0.621 -0.178 NAM YM6 16
YM6 OAN OAN O 0 1 N N N 17.359 -4.459 12.607 -3.950 0.275 0.437 OAN YM6 17
YM6 CAP CAP C 0 1 Y N N 13.647 0.887 10.582 3.083 -0.694 -0.031 CAP YM6 18
YM6 CAQ CAQ C 0 1 Y N N 14.393 -0.192 11.032 1.680 -0.715 0.072 CAQ YM6 19
YM6 CAT CAT C 0 1 N N R 18.430 -3.488 12.435 -3.327 -0.049 -0.809 CAT YM6 20
YM6 NAU NAU N 0 1 N N N 17.022 -2.047 11.108 -1.174 0.604 0.157 NAU YM6 21
YM6 H2 H2 H 0 1 N N N 18.588 0.881 8.233 1.012 4.420 -0.343 H2 YM6 22
YM6 HNAA HNAA H 0 0 N N N 18.325 -2.644 15.681 -3.912 -3.339 -0.767 HNAA YM6 23
YM6 HNAB HNAB H 0 0 N N N 17.701 -3.974 14.968 -4.712 -2.122 0.037 HNAB YM6 24
YM6 HAB HAB H 0 1 N N N 12.035 -1.454 13.099 1.316 -4.047 0.398 HAB YM6 25
YM6 HAD HAD H 0 1 N N N 14.339 -1.903 12.327 -0.038 -1.995 0.309 HAD YM6 26
YM6 HAE HAE H 0 1 N N N 11.789 1.939 10.710 4.847 -1.906 -0.047 HAE YM6 27
YM6 HAF HAF H 0 1 N N N 17.306 -2.054 13.610 -2.311 -1.741 0.054 HAF YM6 28
YM6 HAFA HAFA H 0 0 N N N 19.081 -1.776 13.596 -2.377 -1.752 -1.725 HAFA YM6 29
YM6 HAG HAG H 0 1 N N N 16.108 -3.034 13.453 -2.815 -0.969 1.637 HAG YM6 30
YM6 HAGA HAGA H 0 0 N N N 15.287 -4.470 12.753 -3.634 0.369 2.478 HAGA YM6 31
YM6 HAH HAH H 0 1 N N N 15.921 -3.732 10.482 -2.129 1.997 1.408 HAH YM6 32
YM6 HAHA HAHA H 0 0 N N N 14.969 -2.468 11.333 -1.173 0.758 2.254 HAHA YM6 33
YM6 HAI HAI H 0 1 N N N 18.427 -3.381 10.264 -1.566 0.530 -1.908 HAI YM6 34
YM6 HAIA HAIA H 0 0 N N N 19.133 -1.943 11.077 -2.361 1.864 -1.038 HAIA YM6 35
YM6 HAT HAT H 0 1 N N N 19.408 -3.990 12.483 -4.022 0.146 -1.626 HAT YM6 36
YM6 HNAM HNAM H 0 0 N N N 14.105 2.408 9.250 4.407 0.911 -0.270 HNAM YM6 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YM6 C2 N1 DOUB Y N 1
YM6 N1 C6 SING Y N 2
YM6 N3 C2 SING Y N 3
YM6 C2 H2 SING N N 4
YM6 N3 C4 DOUB Y N 5
YM6 C4 NAM SING Y N 6
YM6 C4 C5 SING Y N 7
YM6 C5 C6 DOUB Y N 8
YM6 C5 CAQ SING Y N 9
YM6 C6 NAU SING N N 10
YM6 CAF NAA SING N N 11
YM6 NAA HNAA SING N N 12
YM6 NAA HNAB SING N N 13
YM6 NAJ CAB SING Y N 14
YM6 CAD CAB DOUB Y N 15
YM6 CAB HAB SING N N 16
YM6 CAQ CAD SING Y N 17
YM6 CAD HAD SING N N 18
YM6 CAP CAE SING Y N 19
YM6 CAE NAJ DOUB Y N 20
YM6 CAE HAE SING N N 21
YM6 CAT CAF SING N N 22
YM6 CAF HAF SING N N 23
YM6 CAF HAFA SING N N 24
YM6 CAH CAG SING N N 25
YM6 OAN CAG SING N N 26
YM6 CAG HAG SING N N 27
YM6 CAG HAGA SING N N 28
YM6 NAU CAH SING N N 29
YM6 CAH HAH SING N N 30
YM6 CAH HAHA SING N N 31
YM6 NAU CAI SING N N 32
YM6 CAI CAT SING N N 33
YM6 CAI HAI SING N N 34
YM6 CAI HAIA SING N N 35
YM6 NAM CAP SING Y N 36
YM6 CAT OAN SING N N 37
YM6 CAP CAQ DOUB Y N 38
YM6 CAT HAT SING N N 39
YM6 NAM HNAM SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YM6 InChI InChI 1.06 "InChI=1S/C14H16N6O/c15-5-9-7-20(3-4-21-9)14-12-10-1-2-16-6-11(10)19-13(12)17-8-18-14/h1-2,6,8-9H,3-5,7,15H2,(H,17,18,19)/t9-/m1/s1"
YM6 InChIKey InChI 1.06 ZOMFTMSIQWYIQV-SECBINFHSA-N
YM6 SMILES_CANONICAL CACTVS 3.385 "NC[C@@H]1CN(CCO1)c2ncnc3[nH]c4cnccc4c23"
YM6 SMILES CACTVS 3.385 "NC[CH]1CN(CCO1)c2ncnc3[nH]c4cnccc4c23"
YM6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cncc2c1c3c([nH]2)ncnc3N4CCO[C@@H](C4)CN"
YM6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cncc2c1c3c([nH]2)ncnc3N4CCOC(C4)CN"
#
_pdbx_chem_comp_identifier.comp_id YM6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(2~{R})-4-(4,6,8,11-tetrazatricyclo[7.4.0.0^{2,7}]trideca-1(9),2,4,6,10,12-hexaen-3-yl)morpholin-2-yl]methanamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YM6 "Create component" 2011-06-06 EBI
YM6 "Modify name" 2011-06-08 EBI
YM6 "Other modification" 2011-06-08 EBI
YM6 "Modify descriptor" 2023-09-23 RCSB
#