data_YM7
#
_chem_comp.id YM7
_chem_comp.name "5-({6-[(piperidin-4-ylmethyl)amino]pyrimidin-4-yl}amino)pyrazine-2-carbonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H18 N8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-06
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 310.357
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YM7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2YM7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YM7 CAI CAI C 0 1 N N N 10.153 10.333 0.738 -5.377 -1.573 0.539 CAI YM7 1
YM7 CAG CAG C 0 1 N N N 11.556 10.616 1.201 -6.901 -1.430 0.509 CAG YM7 2
YM7 NAP NAP N 0 1 N N N 12.432 9.457 1.103 -7.312 -0.827 -0.765 NAP YM7 3
YM7 CAH CAH C 0 1 N N N 11.863 8.265 1.737 -6.748 0.520 -0.922 CAH YM7 4
YM7 CAJ CAJ C 0 1 N N N 10.478 7.974 1.239 -5.220 0.435 -0.935 CAJ YM7 5
YM7 CAW CAW C 0 1 N N N 9.594 9.128 1.373 -4.737 -0.191 0.376 CAW YM7 6
YM7 CAK CAK C 0 1 N N N 8.203 8.779 0.729 -3.214 -0.335 0.344 CAK YM7 7
YM7 NAQ NAQ N 0 1 N N N 7.767 7.399 0.799 -2.599 0.995 0.308 NAQ YM7 8
YM7 C6 C6 C 0 1 Y N N 6.322 7.087 0.985 -1.219 1.119 0.275 C6 YM7 9
YM7 C5 C5 C 0 1 Y N N 5.817 5.738 0.699 -0.407 -0.012 0.275 C5 YM7 10
YM7 N1 N1 N 0 1 Y N N 5.480 8.040 1.403 -0.650 2.323 0.237 N1 YM7 11
YM7 C2 C2 C 0 1 Y N N 4.160 7.753 1.565 0.661 2.450 0.205 C2 YM7 12
YM7 N3 N3 N 0 1 Y N N 3.642 6.454 1.293 1.462 1.405 0.209 N3 YM7 13
YM7 C4 C4 C 0 1 Y N N 4.426 5.480 0.879 0.971 0.167 0.241 C4 YM7 14
YM7 NAR NAR N 0 1 N N N 3.885 4.237 0.644 1.824 -0.929 0.240 NAR YM7 15
YM7 CAT CAT C 0 1 Y N N 4.695 3.042 0.335 3.191 -0.744 0.095 CAT YM7 16
YM7 CAE CAE C 0 1 Y N N 4.081 1.930 -0.289 4.037 -1.850 -0.016 CAE YM7 17
YM7 NAN NAN N 0 1 Y N N 4.789 0.806 -0.533 5.334 -1.676 -0.153 NAN YM7 18
YM7 CAS CAS C 0 1 Y N N 6.070 0.739 -0.172 5.842 -0.444 -0.185 CAS YM7 19
YM7 CAB CAB C 0 1 N N N 6.856 -0.502 -0.429 7.253 -0.254 -0.335 CAB YM7 20
YM7 NAA NAA N 0 1 N N N 7.457 -1.451 -0.614 8.373 -0.103 -0.453 NAA YM7 21
YM7 CAD CAD C 0 1 Y N N 6.705 1.865 0.458 4.996 0.661 -0.074 CAD YM7 22
YM7 NAO NAO N 0 1 Y N N 6.004 2.983 0.701 3.694 0.484 0.058 NAO YM7 23
YM7 HAI1 HAI1 H 0 0 N N N 9.516 11.194 0.989 -5.071 -2.006 1.491 HAI1 YM7 24
YM7 HAI2 HAI2 H 0 0 N N N 10.162 10.188 -0.352 -5.057 -2.221 -0.277 HAI2 YM7 25
YM7 HAG1 HAG1 H 0 0 N N N 11.973 11.424 0.582 -7.360 -2.414 0.610 HAG1 YM7 26
YM7 HAG2 HAG2 H 0 0 N N N 11.520 10.940 2.252 -7.222 -0.793 1.333 HAG2 YM7 27
YM7 HAW HAW H 0 1 N N N 9.427 9.332 2.441 -5.026 0.445 1.212 HAW YM7 28
YM7 HAP HAP H 0 1 N N N 12.594 9.259 0.136 -7.060 -1.418 -1.543 HAP YM7 29
YM7 HAH1 HAH1 H 0 0 N N N 12.509 7.402 1.517 -7.096 0.952 -1.860 HAH1 YM7 30
YM7 HAH2 HAH2 H 0 0 N N N 11.824 8.425 2.825 -7.070 1.148 -0.091 HAH2 YM7 31
YM7 HAJ1 HAJ1 H 0 0 N N N 10.535 7.692 0.177 -4.897 -0.182 -1.774 HAJ1 YM7 32
YM7 HAJ2 HAJ2 H 0 0 N N N 10.061 7.138 1.819 -4.801 1.436 -1.036 HAJ2 YM7 33
YM7 HAK1 HAK1 H 0 0 N N N 7.442 9.392 1.234 -2.880 -0.866 1.235 HAK1 YM7 34
YM7 HAK2 HAK2 H 0 0 N N N 8.252 9.057 -0.334 -2.920 -0.895 -0.544 HAK2 YM7 35
YM7 HAQ HAQ H 0 1 N N N 8.050 6.962 -0.055 -3.158 1.788 0.308 HAQ YM7 36
YM7 H5 H5 H 0 1 N N N 6.484 4.959 0.360 -0.837 -1.002 0.301 H5 YM7 37
YM7 H2 H2 H 0 1 N N N 3.490 8.527 1.908 1.091 3.440 0.175 H2 YM7 38
YM7 HAR HAR H 0 1 N N N 2.891 4.138 0.685 1.463 -1.824 0.339 HAR YM7 39
YM7 HAE HAE H 0 1 N N N 3.040 1.981 -0.572 3.627 -2.849 0.010 HAE YM7 40
YM7 HAD HAD H 0 1 N N N 7.747 1.811 0.736 5.406 1.660 -0.100 HAD YM7 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YM7 CAI CAG SING N N 1
YM7 CAI CAW SING N N 2
YM7 CAG NAP SING N N 3
YM7 NAP CAH SING N N 4
YM7 CAH CAJ SING N N 5
YM7 CAJ CAW SING N N 6
YM7 CAW CAK SING N N 7
YM7 CAK NAQ SING N N 8
YM7 NAQ C6 SING N N 9
YM7 C6 C5 SING Y N 10
YM7 C6 N1 DOUB Y N 11
YM7 C5 C4 DOUB Y N 12
YM7 N1 C2 SING Y N 13
YM7 C2 N3 DOUB Y N 14
YM7 N3 C4 SING Y N 15
YM7 C4 NAR SING N N 16
YM7 NAR CAT SING N N 17
YM7 CAT CAE SING Y N 18
YM7 CAT NAO DOUB Y N 19
YM7 CAE NAN DOUB Y N 20
YM7 NAN CAS SING Y N 21
YM7 CAS CAB SING N N 22
YM7 CAS CAD DOUB Y N 23
YM7 CAB NAA TRIP N N 24
YM7 CAD NAO SING Y N 25
YM7 CAI HAI1 SING N N 26
YM7 CAI HAI2 SING N N 27
YM7 CAG HAG1 SING N N 28
YM7 CAG HAG2 SING N N 29
YM7 CAW HAW SING N N 30
YM7 NAP HAP SING N N 31
YM7 CAH HAH1 SING N N 32
YM7 CAH HAH2 SING N N 33
YM7 CAJ HAJ1 SING N N 34
YM7 CAJ HAJ2 SING N N 35
YM7 CAK HAK1 SING N N 36
YM7 CAK HAK2 SING N N 37
YM7 NAQ HAQ SING N N 38
YM7 C5 H5 SING N N 39
YM7 C2 H2 SING N N 40
YM7 NAR HAR SING N N 41
YM7 CAE HAE SING N N 42
YM7 CAD HAD SING N N 43
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YM7 SMILES ACDLabs 12.01 "N#Cc1ncc(nc1)Nc3ncnc(NCC2CCNCC2)c3"
YM7 InChI InChI 1.03 "InChI=1S/C15H18N8/c16-6-12-8-20-15(9-18-12)23-14-5-13(21-10-22-14)19-7-11-1-3-17-4-2-11/h5,8-11,17H,1-4,7H2,(H2,19,20,21,22,23)"
YM7 InChIKey InChI 1.03 LNWARQATROLGJR-UHFFFAOYSA-N
YM7 SMILES_CANONICAL CACTVS 3.385 "N#Cc1cnc(Nc2cc(NCC3CCNCC3)ncn2)cn1"
YM7 SMILES CACTVS 3.385 "N#Cc1cnc(Nc2cc(NCC3CCNCC3)ncn2)cn1"
YM7 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(ncnc1Nc2cnc(cn2)C#N)NCC3CCNCC3"
YM7 SMILES "OpenEye OEToolkits" 1.9.2 "c1c(ncnc1Nc2cnc(cn2)C#N)NCC3CCNCC3"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YM7 "SYSTEMATIC NAME" ACDLabs 12.01 "5-({6-[(piperidin-4-ylmethyl)amino]pyrimidin-4-yl}amino)pyrazine-2-carbonitrile"
YM7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-[[6-(piperidin-4-ylmethylamino)pyrimidin-4-yl]amino]pyrazine-2-carbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YM7 "Create component" 2011-06-06 EBI
YM7 "Modify descriptor" 2014-09-05 RCSB
#