data_YM9 # _chem_comp.id YM9 _chem_comp.name "(5M)-5-(2-chloro-5-fluoro-4-methylphenyl)-1H-benzimidazole-7-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H10 Cl F N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-09 _chem_comp.pdbx_modified_date 2024-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 304.704 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YM9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FU2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YM9 C10 C1 C 0 1 Y N N N N N 8.934 -16.433 -17.693 -0.879 -0.665 -0.403 C10 YM9 1 YM9 C11 C2 C 0 1 N N N N N N 10.314 -18.273 -18.709 -3.128 -1.631 -0.832 C11 YM9 2 YM9 O12 O1 O 0 1 N N N N N N 11.070 -18.233 -17.702 -2.579 -2.791 -1.243 O12 YM9 3 YM9 C17 C3 C 0 1 Y N N N N N 8.233 -17.295 -19.828 -2.833 0.689 0.034 C17 YM9 4 YM9 C18 C4 C 0 1 Y N N N N N 7.153 -16.408 -19.839 -2.005 1.745 0.452 C18 YM9 5 YM9 C20 C5 C 0 1 Y N N N N N 7.067 -17.598 -21.636 -4.063 2.415 0.643 C20 YM9 6 YM9 C1 C6 C 0 1 Y N N N N N 7.926 -12.291 -15.669 3.375 -1.038 0.557 C1 YM9 7 YM9 C14 C7 C 0 1 N N N N N N 7.246 -11.717 -13.313 5.665 -0.243 -0.066 C14 YM9 8 YM9 C2 C8 C 0 1 Y N N N N N 7.413 -12.702 -14.440 4.167 -0.078 -0.047 C2 YM9 9 YM9 C3 C9 C 0 1 Y N N N N N 7.047 -14.032 -14.334 3.587 1.034 -0.636 C3 YM9 10 YM9 C4 C10 C 0 1 Y N N N N N 7.167 -14.939 -15.363 2.214 1.190 -0.621 C4 YM9 11 YM9 C5 C11 C 0 1 Y N N N N N 7.700 -14.541 -16.587 1.413 0.226 -0.013 C5 YM9 12 YM9 C6 C12 C 0 1 Y N N N N N 8.053 -13.187 -16.718 2.002 -0.892 0.577 C6 YM9 13 YM9 C7 C13 C 0 1 Y N N N N N 7.848 -15.544 -17.681 -0.062 0.387 0.006 C7 YM9 14 YM9 C8 C14 C 0 1 Y N N N N N 6.970 -15.522 -18.774 -0.619 1.587 0.432 C8 YM9 15 YM9 C9 C15 C 0 1 Y N N N N N 9.124 -17.346 -18.742 -2.264 -0.520 -0.394 C9 YM9 16 YM9 F15 F1 F 0 1 N N N N N N 6.581 -14.474 -13.147 4.366 1.969 -1.224 F15 YM9 17 YM9 N19 N1 N 0 1 Y N N N N N 6.450 -16.594 -21.036 -2.823 2.770 0.811 N19 YM9 18 YM9 N21 N2 N 0 1 Y N N N N N 8.144 -18.057 -20.964 -4.124 1.141 0.167 N21 YM9 19 YM9 O13 O2 O 0 1 N N N N N N 10.503 -19.012 -19.711 -4.336 -1.501 -0.823 O13 YM9 20 YM9 CL16 CL1 CL 0 0 N N N N N N 8.729 -12.607 -18.201 1.011 -2.098 1.336 CL16 YM9 21 YM9 H25 H1 H 0 1 N N N N N N 9.640 -16.414 -16.876 -0.437 -1.594 -0.733 H25 YM9 22 YM9 H1 H2 H 0 1 N N N N N N 11.791 -18.840 -17.822 -3.186 -3.490 -1.521 H1 YM9 23 YM9 H31 H3 H 0 1 N N N N N N 6.739 -18.013 -22.578 -4.919 3.039 0.852 H31 YM9 24 YM9 H22 H4 H 0 1 N N N N N N 8.228 -11.263 -15.805 3.832 -1.906 1.010 H22 YM9 25 YM9 H28 H5 H 0 1 N N N N N N 6.250 -11.253 -13.375 5.959 -0.789 -0.963 H28 YM9 26 YM9 H29 H6 H 0 1 N N N N N N 7.347 -12.240 -12.351 6.138 0.739 -0.067 H29 YM9 27 YM9 H27 H7 H 0 1 N N N N N N 8.019 -10.938 -13.390 5.980 -0.798 0.817 H27 YM9 28 YM9 H23 H8 H 0 1 N N N N N N 6.847 -15.961 -15.221 1.762 2.057 -1.079 H23 YM9 29 YM9 H24 H9 H 0 1 N N N N N N 6.151 -14.819 -18.793 0.021 2.398 0.747 H24 YM9 30 YM9 H30 H11 H 0 1 N N N N N N 8.753 -18.801 -21.239 -4.931 0.644 -0.042 H30 YM9 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YM9 C1 C6 DOUB Y N 1 YM9 C1 C2 SING Y N 2 YM9 C2 C3 DOUB Y N 3 YM9 C2 C14 SING N N 4 YM9 C3 F15 SING N N 5 YM9 C3 C4 SING Y N 6 YM9 C4 C5 DOUB Y N 7 YM9 C5 C6 SING Y N 8 YM9 C5 C7 SING N N 9 YM9 C6 CL16 SING N N 10 YM9 C7 C10 DOUB Y N 11 YM9 C7 C8 SING Y N 12 YM9 C8 C18 DOUB Y N 13 YM9 C9 C10 SING Y N 14 YM9 C9 C11 SING N N 15 YM9 C9 C17 DOUB Y N 16 YM9 C11 O12 SING N N 17 YM9 C11 O13 DOUB N N 18 YM9 C17 C18 SING Y N 19 YM9 C17 N21 SING Y N 20 YM9 C18 N19 SING Y N 21 YM9 N19 C20 DOUB Y N 22 YM9 C20 N21 SING Y N 23 YM9 C10 H25 SING N N 24 YM9 O12 H1 SING N N 25 YM9 C20 H31 SING N N 26 YM9 C1 H22 SING N N 27 YM9 C14 H28 SING N N 28 YM9 C14 H29 SING N N 29 YM9 C14 H27 SING N N 30 YM9 C4 H23 SING N N 31 YM9 C8 H24 SING N N 32 YM9 N21 H30 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YM9 SMILES ACDLabs 12.01 "Fc1cc(c2cc3nc[NH]c3c(c2)C(=O)O)c(Cl)cc1C" YM9 InChI InChI 1.06 "InChI=1S/C15H10ClFN2O2/c1-7-2-11(16)9(5-12(7)17)8-3-10(15(20)21)14-13(4-8)18-6-19-14/h2-6H,1H3,(H,18,19)(H,20,21)" YM9 InChIKey InChI 1.06 DYYWPYAEACAPSR-UHFFFAOYSA-N YM9 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(Cl)c(cc1F)c2cc3nc[nH]c3c(c2)C(O)=O" YM9 SMILES CACTVS 3.385 "Cc1cc(Cl)c(cc1F)c2cc3nc[nH]c3c(c2)C(O)=O" YM9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1F)c2cc(c3c(c2)nc[nH]3)C(=O)O)Cl" YM9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1F)c2cc(c3c(c2)nc[nH]3)C(=O)O)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YM9 "SYSTEMATIC NAME" ACDLabs 12.01 "(5M)-5-(2-chloro-5-fluoro-4-methylphenyl)-1H-benzimidazole-7-carboxylic acid" YM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-chloranyl-5-fluoranyl-4-methyl-phenyl)-3~{H}-benzimidazole-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YM9 "Create component" 2023-02-09 RCSB YM9 "Initial release" 2024-02-21 RCSB #