data_YMG # _chem_comp.id YMG _chem_comp.name "(1S,2S)-2-((S)-2-((((4,4-dimethylcyclohexyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H39 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.625 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YMG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YMG C11 C1 C 0 1 N N S N N N 9.097 19.892 27.414 -3.038 -0.163 0.219 C11 YMG 1 YMG C12 C2 C 0 1 N N N N N N 7.999 19.884 26.319 -3.883 0.860 -0.544 C12 YMG 2 YMG C13 C3 C 0 1 N N S N N N 7.742 21.175 25.695 -3.113 2.178 -0.652 C13 YMG 3 YMG C14 C4 C 0 1 N N N N N N 6.694 21.021 24.501 -3.954 3.226 -1.347 C14 YMG 4 YMG C16 C5 C 0 1 N N N N N N 6.028 22.708 26.032 -3.004 4.285 0.488 C16 YMG 5 YMG C02 C6 C 0 1 N N N N N N 11.283 24.037 25.681 2.932 -0.187 0.036 C02 YMG 6 YMG C04 C7 C 0 1 N N S N N N 12.270 22.069 26.914 0.652 -0.822 -0.544 C04 YMG 7 YMG C05 C8 C 0 1 N N N N N N 13.382 21.810 27.921 0.749 -2.174 -1.254 C05 YMG 8 YMG C06 C9 C 0 1 N N N N N N 14.731 22.282 27.398 -0.333 -2.262 -2.332 C06 YMG 9 YMG C07 C10 C 0 1 N N N N N N 15.119 21.518 26.139 -0.063 -1.214 -3.413 C07 YMG 10 YMG C08 C11 C 0 1 N N N N N N 15.807 22.162 28.472 -0.315 -3.658 -2.959 C08 YMG 11 YMG C09 C12 C 0 1 N N N N N N 10.955 21.576 27.492 -0.668 -0.727 0.177 C09 YMG 12 YMG C17 C13 C 0 1 N N N N N N 7.046 22.064 26.696 -2.855 2.770 0.753 C17 YMG 13 YMG C19 C14 C 0 1 N N S N N N 9.340 18.526 28.051 -3.812 -1.478 0.335 C19 YMG 14 YMG C23 C15 C 0 1 N N N N N N 10.287 25.925 24.698 5.215 0.399 0.411 C23 YMG 15 YMG C24 C16 C 0 1 N N N N N N 8.882 26.064 25.279 5.980 1.023 1.580 C24 YMG 16 YMG C25 C17 C 0 1 N N N N N N 7.946 26.801 24.329 7.293 1.618 1.069 C25 YMG 17 YMG C26 C18 C 0 1 N N N N N N 8.505 28.154 23.899 8.142 0.514 0.436 C26 YMG 18 YMG C27 C19 C 0 1 N N N N N N 7.593 28.721 22.822 9.456 1.109 -0.074 C27 YMG 19 YMG C28 C20 C 0 1 N N N N N N 8.494 29.123 25.082 8.442 -0.562 1.482 C28 YMG 20 YMG C29 C21 C 0 1 N N N N N N 9.918 28.042 23.338 7.377 -0.111 -0.732 C29 YMG 21 YMG C30 C22 C 0 1 N N N N N N 10.855 27.276 24.266 6.063 -0.706 -0.222 C30 YMG 22 YMG N03 N1 N 0 1 N N N N N N 12.187 23.487 26.660 1.746 -0.698 0.422 N03 YMG 23 YMG N10 N2 N 0 1 N N N N N N 10.350 20.411 26.899 -1.784 -0.396 -0.502 N10 YMG 24 YMG N15 N3 N 0 1 N N N N N N 5.713 21.909 24.709 -3.878 4.393 -0.685 N15 YMG 25 YMG O01 O1 O 0 1 N N N N N N 10.695 23.348 24.925 3.066 0.254 -1.088 O01 YMG 26 YMG O18 O2 O 0 1 N N N N N N 6.767 20.284 23.597 -4.601 3.040 -2.356 O18 YMG 27 YMG O20 O3 O 0 1 N N N N N N 8.147 17.970 28.536 -2.978 -2.469 0.940 O20 YMG 28 YMG O21 O4 O 0 1 N N N N N N 10.427 22.145 28.383 -0.726 -0.948 1.368 O21 YMG 29 YMG O22 O5 O 0 1 N N N N N N 11.136 25.420 25.670 3.968 -0.166 0.895 O22 YMG 30 YMG H1 H1 H 0 1 N N N N N N 8.749 20.565 28.211 -2.819 0.219 1.216 H1 YMG 31 YMG H2 H2 H 0 1 N N N N N N 7.062 19.534 26.778 -4.097 0.481 -1.543 H2 YMG 32 YMG H3 H3 H 0 1 N N N N N N 8.307 19.180 25.532 -4.819 1.028 -0.011 H3 YMG 33 YMG H4 H4 H 0 1 N N N N N N 8.666 21.643 25.324 -2.173 2.027 -1.181 H4 YMG 34 YMG H5 H5 H 0 1 N N N N N N 6.338 23.733 25.782 -3.463 4.774 1.347 H5 YMG 35 YMG H6 H6 H 0 1 N N N N N N 5.132 22.741 26.669 -2.030 4.728 0.278 H6 YMG 36 YMG H7 H7 H 0 1 N N N N N N 12.487 21.524 25.983 0.723 -0.020 -1.278 H7 YMG 37 YMG H8 H8 H 0 1 N N N N N N 13.152 22.347 28.853 1.731 -2.271 -1.717 H8 YMG 38 YMG H9 H9 H 0 1 N N N N N N 13.436 20.730 28.124 0.607 -2.976 -0.530 H9 YMG 39 YMG H10 H10 H 0 1 N N N N N N 14.637 23.345 27.132 -1.309 -2.078 -1.883 H10 YMG 40 YMG H11 H11 H 0 1 N N N N N N 16.095 21.875 25.779 0.880 -1.440 -3.911 H11 YMG 41 YMG H12 H12 H 0 1 N N N N N N 15.183 20.444 26.367 -0.872 -1.229 -4.144 H12 YMG 42 YMG H13 H13 H 0 1 N N N N N N 14.359 21.683 25.361 -0.005 -0.227 -2.956 H13 YMG 43 YMG H14 H14 H 0 1 N N N N N N 15.498 22.723 29.366 -0.508 -4.405 -2.189 H14 YMG 44 YMG H15 H15 H 0 1 N N N N N N 15.947 21.103 28.734 -1.087 -3.721 -3.727 H15 YMG 45 YMG H16 H16 H 0 1 N N N N N N 16.753 22.573 28.090 0.660 -3.842 -3.408 H16 YMG 46 YMG H17 H17 H 0 1 N N N N N N 6.636 21.458 27.517 -3.603 2.424 1.466 H17 YMG 47 YMG H18 H18 H 0 1 N N N N N N 7.755 22.800 27.103 -1.849 2.531 1.098 H18 YMG 48 YMG H19 H19 H 0 1 N N N N N N 10.017 18.688 28.902 -4.111 -1.812 -0.658 H19 YMG 49 YMG S1 S1 S 0 1 N Y N N N N 9.728 17.873 27.297 -5.288 -1.223 1.358 S1 YMG 50 YMG H21 H21 H 0 1 N N N N N N 10.248 25.258 23.824 5.001 1.165 -0.334 H21 YMG 51 YMG H22 H22 H 0 1 N N N N N N 8.942 26.623 26.225 5.375 1.810 2.031 H22 YMG 52 YMG H23 H23 H 0 1 N N N N N N 8.476 25.060 25.471 6.193 0.257 2.325 H23 YMG 53 YMG H24 H24 H 0 1 N N N N N N 6.983 26.961 24.835 7.080 2.385 0.324 H24 YMG 54 YMG H25 H25 H 0 1 N N N N N N 7.791 26.181 23.433 7.839 2.063 1.902 H25 YMG 55 YMG H26 H26 H 0 1 N N N N N N 6.569 28.807 23.215 10.001 1.554 0.759 H26 YMG 56 YMG H27 H27 H 0 1 N N N N N N 7.955 29.716 22.522 10.060 0.322 -0.525 H27 YMG 57 YMG H28 H28 H 0 1 N N N N N N 7.596 28.051 21.950 9.242 1.875 -0.819 H28 YMG 58 YMG H29 H29 H 0 1 N N N N N N 9.147 28.737 25.879 7.506 -0.986 1.846 H29 YMG 59 YMG H30 H30 H 0 1 N N N N N N 8.859 30.107 24.753 9.046 -1.349 1.031 H30 YMG 60 YMG H31 H31 H 0 1 N N N N N N 7.468 29.222 25.465 8.987 -0.117 2.315 H31 YMG 61 YMG H32 H32 H 0 1 N N N N N N 9.873 27.519 22.371 7.163 0.656 -1.477 H32 YMG 62 YMG H33 H33 H 0 1 N N N N N N 10.320 29.055 23.189 7.982 -0.897 -1.183 H33 YMG 63 YMG H34 H34 H 0 1 N N N N N N 11.807 27.106 23.742 6.277 -1.472 0.523 H34 YMG 64 YMG H35 H35 H 0 1 N N N N N N 11.035 27.885 25.164 5.518 -1.151 -1.055 H35 YMG 65 YMG H36 H36 H 0 1 N N N N N N 12.775 24.107 27.179 1.617 -0.984 1.340 H36 YMG 66 YMG H37 H37 H 0 1 N N N N N N 10.796 19.957 26.128 -1.758 -0.311 -1.468 H37 YMG 67 YMG H38 H38 H 0 1 N N N N N N 4.914 22.043 24.123 -4.342 5.203 -0.949 H38 YMG 68 YMG H39 H39 H 0 1 N N N N N N 8.328 17.123 28.926 -2.168 -2.657 0.446 H39 YMG 69 YMG O1 O6 O 0 1 N Y N N N N ? ? ? -6.038 -2.426 1.459 O1 YMG 70 YMG O2 O7 O 0 1 N Y N N N N ? ? ? -4.969 -0.459 2.513 O2 YMG 71 YMG O3 O8 O 0 1 N Y N N N N ? ? ? -6.169 -0.300 0.529 O3 YMG 72 YMG H20 H20 H 0 1 N Y N N N N ? ? ? -7.008 -0.071 0.953 H20 YMG 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YMG C27 C26 SING N N 1 YMG C29 C26 SING N N 2 YMG C29 C30 SING N N 3 YMG O18 C14 DOUB N N 4 YMG C26 C25 SING N N 5 YMG C26 C28 SING N N 6 YMG C30 C23 SING N N 7 YMG C25 C24 SING N N 8 YMG C14 N15 SING N N 9 YMG C14 C13 SING N N 10 YMG C23 C24 SING N N 11 YMG C23 O22 SING N N 12 YMG N15 C16 SING N N 13 YMG O01 C02 DOUB N N 14 YMG O22 C02 SING N N 15 YMG C02 N03 SING N N 16 YMG C13 C12 SING N N 17 YMG C13 C17 SING N N 18 YMG C16 C17 SING N N 19 YMG C07 C06 SING N N 20 YMG C12 C11 SING N N 21 YMG N03 C04 SING N N 22 YMG N10 C11 SING N N 23 YMG N10 C09 SING N N 24 YMG C04 C09 SING N N 25 YMG C04 C05 SING N N 26 YMG C06 C05 SING N N 27 YMG C06 C08 SING N N 28 YMG C11 C19 SING N N 29 YMG C09 O21 DOUB N N 30 YMG C19 O20 SING N N 31 YMG C11 H1 SING N N 32 YMG C12 H2 SING N N 33 YMG C12 H3 SING N N 34 YMG C13 H4 SING N N 35 YMG C16 H5 SING N N 36 YMG C16 H6 SING N N 37 YMG C04 H7 SING N N 38 YMG C05 H8 SING N N 39 YMG C05 H9 SING N N 40 YMG C06 H10 SING N N 41 YMG C07 H11 SING N N 42 YMG C07 H12 SING N N 43 YMG C07 H13 SING N N 44 YMG C08 H14 SING N N 45 YMG C08 H15 SING N N 46 YMG C08 H16 SING N N 47 YMG C17 H17 SING N N 48 YMG C17 H18 SING N N 49 YMG C19 H19 SING N N 50 YMG C19 S1 SING N N 51 YMG C23 H21 SING N N 52 YMG C24 H22 SING N N 53 YMG C24 H23 SING N N 54 YMG C25 H24 SING N N 55 YMG C25 H25 SING N N 56 YMG C27 H26 SING N N 57 YMG C27 H27 SING N N 58 YMG C27 H28 SING N N 59 YMG C28 H29 SING N N 60 YMG C28 H30 SING N N 61 YMG C28 H31 SING N N 62 YMG C29 H32 SING N N 63 YMG C29 H33 SING N N 64 YMG C30 H34 SING N N 65 YMG C30 H35 SING N N 66 YMG N03 H36 SING N N 67 YMG N10 H37 SING N N 68 YMG N15 H38 SING N N 69 YMG O20 H39 SING N N 70 YMG S1 O1 DOUB N N 71 YMG S1 O2 DOUB N N 72 YMG S1 O3 SING N N 73 YMG O3 H20 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YMG SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OC1CCC(C)(C)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YMG InChI InChI 1.03 "InChI=1S/C22H39N3O8S/c1-13(2)11-16(25-21(29)33-15-5-8-22(3,4)9-6-15)19(27)24-17(20(28)34(30,31)32)12-14-7-10-23-18(14)26/h13-17,20,28H,5-12H2,1-4H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20-/m0/s1" YMG InChIKey InChI 1.03 LGCFVMZACNBZBJ-VERUCKTNSA-N YMG SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC1CCC(C)(C)CC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O" YMG SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC1CCC(C)(C)CC1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YMG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)(C)C" YMG SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YMG "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[(4,4-dimethylcyclohexyl)oxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" YMG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(4,4-dimethylcyclohexyl)oxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YMG "Create component" 2021-03-12 RCSB YMG "Initial release" 2021-03-24 RCSB YMG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YMG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #