data_YMJ # _chem_comp.id YMJ _chem_comp.name "(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H41 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.652 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YMJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YMJ C21 C1 C 0 1 N N N N N N 9.523 16.575 23.297 10.981 -0.610 -0.585 C21 YMJ 1 YMJ C14 C2 C 0 1 N N R N N N 7.976 2.280 19.564 -3.978 -1.923 -0.830 C14 YMJ 2 YMJ C13 C3 C 0 1 N N N N N N 6.147 6.252 20.261 -5.698 1.961 0.381 C13 YMJ 3 YMJ C12 C4 C 0 1 N N N N N N 5.520 7.594 19.929 -6.087 3.445 0.204 C12 YMJ 4 YMJ C16 C5 C 0 1 N N N N N N 11.272 10.815 23.272 4.978 1.203 0.089 C16 YMJ 5 YMJ C15 C6 C 0 1 N N N N N N 10.336 9.887 22.536 4.369 -0.127 -0.360 C15 YMJ 6 YMJ C11 C7 C 0 1 N N N N N N 6.817 6.993 18.094 -4.474 3.016 -1.412 C11 YMJ 7 YMJ C18 C8 C 0 1 N N N N N N 9.594 12.693 23.078 7.256 0.357 -0.495 C18 YMJ 8 YMJ C19 C9 C 0 1 N N N N N N 9.357 14.144 22.671 8.672 0.118 0.031 C19 YMJ 9 YMJ C1 C10 C 0 1 N N N N N N 10.484 7.528 22.150 2.020 0.024 0.034 C1 YMJ 10 YMJ C10 C11 C 0 1 N N S N N N 7.254 6.086 19.227 -4.374 1.884 -0.414 C10 YMJ 11 YMJ C17 C12 C 0 1 N N N N N N 11.040 12.267 22.854 6.395 0.964 0.615 C17 YMJ 12 YMJ C2 C13 C 0 1 N N S N N N 10.780 5.117 22.106 -0.345 0.143 0.607 C2 YMJ 13 YMJ C20 C14 C 0 1 N N N N N N 10.072 15.185 23.515 9.565 -0.371 -1.111 C20 YMJ 14 YMJ C22 C15 C 0 1 N N N N N N 8.654 11.736 22.354 6.647 -0.973 -0.944 C22 YMJ 15 YMJ C23 C16 C 0 1 N N N N N N 8.893 10.281 22.757 5.230 -0.733 -1.470 C23 YMJ 16 YMJ C3 C17 C 0 1 N N N N N N 11.443 4.077 23.002 -0.506 1.493 1.309 C3 YMJ 17 YMJ C4 C18 C 0 1 N N N N N N 12.951 4.262 23.165 0.747 1.792 2.134 C4 YMJ 18 YMJ C5 C19 C 0 1 N N N N N N 13.685 3.848 21.898 0.639 3.195 2.735 C5 YMJ 19 YMJ C6 C20 C 0 1 N N N N N N 13.472 3.480 24.356 0.874 0.763 3.260 C6 YMJ 20 YMJ C7 C21 C 0 1 N N N N N N 9.368 4.700 21.712 -1.625 -0.209 -0.106 C7 YMJ 21 YMJ C8 C22 C 0 1 N N S N N N 7.927 3.745 19.957 -4.035 -0.572 -0.112 C8 YMJ 22 YMJ C9 C23 C 0 1 N N N N N N 7.539 4.649 18.790 -4.260 0.541 -1.137 C9 YMJ 23 YMJ N1 N1 N 0 1 N N N N N N 10.793 6.400 22.777 0.748 0.225 -0.364 N1 YMJ 24 YMJ N2 N2 N 0 1 N N N N N N 9.222 4.161 20.499 -2.771 -0.340 0.592 N2 YMJ 25 YMJ N3 N3 N 0 1 N N N N N N 5.772 7.706 18.497 -5.445 3.872 -1.045 N3 YMJ 26 YMJ O1 O1 O 0 1 N N N N N N 10.239 7.653 20.965 2.260 -0.225 1.199 O1 YMJ 27 YMJ O2 O2 O 0 1 N N N N N N 7.365 7.074 16.987 -3.781 3.135 -2.400 O2 YMJ 28 YMJ O3 O3 O 0 1 N N N N N N 8.365 1.464 20.647 -5.235 -2.181 -1.458 O3 YMJ 29 YMJ O4 O4 O 0 1 N N N N N N 8.429 4.882 22.481 -1.624 -0.375 -1.307 O4 YMJ 30 YMJ O5 O5 O 0 1 N N N N N N 10.513 8.532 23.051 3.025 0.100 -0.859 O5 YMJ 31 YMJ H1 H1 H 0 1 N N N N N N 10.072 17.290 23.928 11.382 0.320 -0.184 H1 YMJ 32 YMJ H2 H2 H 0 1 N N N N N N 9.641 16.854 22.240 10.954 -1.364 0.203 H2 YMJ 33 YMJ H3 H3 H 0 1 N N N N N N 8.456 16.594 23.564 11.617 -0.959 -1.399 H3 YMJ 34 YMJ S1 S1 S 0 1 N Y N N N N 8.652 2.145 18.746 -3.623 -3.233 0.374 S1 YMJ 35 YMJ H5 H5 H 0 1 N N N N N N 6.942 2.004 19.309 -3.192 -1.900 -1.584 H5 YMJ 36 YMJ H6 H6 H 0 1 N N N N N N 5.406 5.443 20.172 -5.536 1.723 1.432 H6 YMJ 37 YMJ H7 H7 H 0 1 N N N N N N 6.563 6.258 21.279 -6.452 1.305 -0.054 H7 YMJ 38 YMJ H8 H8 H 0 1 N N N N N N 6.006 8.410 20.484 -7.170 3.544 0.124 H8 YMJ 39 YMJ H9 H9 H 0 1 N N N N N N 4.441 7.595 20.145 -5.716 4.035 1.042 H9 YMJ 40 YMJ H10 H10 H 0 1 N N N N N N 11.097 10.719 24.354 5.016 1.889 -0.757 H10 YMJ 41 YMJ H11 H11 H 0 1 N N N N N N 12.311 10.536 23.042 4.365 1.635 0.880 H11 YMJ 42 YMJ H12 H12 H 0 1 N N N N N N 10.562 9.916 21.460 4.332 -0.813 0.486 H12 YMJ 43 YMJ H13 H13 H 0 1 N N N N N N 9.386 12.612 24.155 7.294 1.043 -1.341 H13 YMJ 44 YMJ H14 H14 H 0 1 N N N N N N 9.692 14.263 21.630 9.073 1.049 0.433 H14 YMJ 45 YMJ H15 H15 H 0 1 N N N N N N 8.277 14.341 22.733 8.645 -0.635 0.819 H15 YMJ 46 YMJ H16 H16 H 0 1 N N N N N N 8.180 6.498 19.654 -3.522 2.035 0.249 H16 YMJ 47 YMJ H17 H17 H 0 1 N N N N N N 11.282 12.374 21.786 6.829 1.911 0.935 H17 YMJ 48 YMJ H18 H18 H 0 1 N N N N N N 11.700 12.918 23.446 6.357 0.277 1.461 H18 YMJ 49 YMJ H19 H19 H 0 1 N N N N N N 11.376 5.195 21.185 -0.117 -0.626 1.346 H19 YMJ 50 YMJ H20 H20 H 0 1 N N N N N N 9.955 14.921 24.576 9.592 0.382 -1.899 H20 YMJ 51 YMJ H21 H21 H 0 1 N N N N N N 11.140 15.181 23.252 9.164 -1.302 -1.513 H21 YMJ 52 YMJ H22 H22 H 0 1 N N N N N N 8.813 11.835 21.270 7.260 -1.405 -1.735 H22 YMJ 53 YMJ H23 H23 H 0 1 N N N N N N 7.616 12.006 22.598 6.609 -1.659 -0.098 H23 YMJ 54 YMJ H24 H24 H 0 1 N N N N N N 8.645 10.157 23.822 4.796 -1.681 -1.790 H24 YMJ 55 YMJ H25 H25 H 0 1 N N N N N N 8.246 9.629 22.152 5.268 -0.047 -2.316 H25 YMJ 56 YMJ H26 H26 H 0 1 N N N N N N 10.979 4.133 23.998 -0.646 2.275 0.563 H26 YMJ 57 YMJ H27 H27 H 0 1 N N N N N N 11.262 3.082 22.569 -1.375 1.459 1.967 H27 YMJ 58 YMJ H28 H28 H 0 1 N N N N N N 13.147 5.330 23.342 1.626 1.738 1.492 H28 YMJ 59 YMJ H29 H29 H 0 1 N N N N N N 14.767 3.989 22.038 -0.240 3.248 3.377 H29 YMJ 60 YMJ H30 H30 H 0 1 N N N N N N 13.478 2.789 21.684 1.532 3.408 3.323 H30 YMJ 61 YMJ H31 H31 H 0 1 N N N N N N 13.340 4.466 21.056 0.549 3.927 1.933 H31 YMJ 62 YMJ H32 H32 H 0 1 N N N N N N 12.933 3.790 25.263 0.951 -0.236 2.832 H32 YMJ 63 YMJ H33 H33 H 0 1 N N N N N N 13.315 2.405 24.186 1.767 0.976 3.848 H33 YMJ 64 YMJ H34 H34 H 0 1 N N N N N N 14.547 3.678 24.483 -0.005 0.817 3.902 H34 YMJ 65 YMJ H35 H35 H 0 1 N N N N N N 7.164 3.860 20.741 -4.855 -0.577 0.606 H35 YMJ 66 YMJ H36 H36 H 0 1 N N N N N N 6.636 4.240 18.313 -5.179 0.346 -1.689 H36 YMJ 67 YMJ H37 H37 H 0 1 N N N N N N 8.365 4.659 18.063 -3.419 0.572 -1.830 H37 YMJ 68 YMJ H38 H38 H 0 1 N N N N N N 11.043 6.437 23.745 0.557 0.424 -1.294 H38 YMJ 69 YMJ H39 H39 H 0 1 N N N N N N 10.037 4.035 19.933 -2.759 -0.280 1.560 H39 YMJ 70 YMJ H40 H40 H 0 1 N N N N N N 5.215 8.263 17.881 -5.689 4.669 -1.541 H40 YMJ 71 YMJ H41 H41 H 0 1 N N N N N N 8.386 0.556 20.368 -5.489 -1.519 -2.115 H41 YMJ 72 YMJ O7 O7 O 0 1 N Y N N N N ? ? ? -4.491 -3.129 1.494 O7 YMJ 73 YMJ O6 O6 O 0 1 N Y N N N N ? ? ? -3.423 -4.475 -0.286 O6 YMJ 74 YMJ O8 O8 O 0 1 N Y N N N N ? ? ? -2.251 -2.877 0.928 O8 YMJ 75 YMJ H4 H4 H 0 1 N Y N N N N ? ? ? -1.923 -3.498 1.594 H4 YMJ 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YMJ O2 C11 DOUB N N 1 YMJ C11 N3 SING N N 2 YMJ C11 C10 SING N N 3 YMJ N3 C12 SING N N 4 YMJ C9 C10 SING N N 5 YMJ C9 C8 SING N N 6 YMJ C10 C13 SING N N 7 YMJ C14 C8 SING N N 8 YMJ C14 O3 SING N N 9 YMJ C12 C13 SING N N 10 YMJ C8 N2 SING N N 11 YMJ N2 C7 SING N N 12 YMJ O1 C1 DOUB N N 13 YMJ C7 C2 SING N N 14 YMJ C7 O4 DOUB N N 15 YMJ C5 C4 SING N N 16 YMJ C2 N1 SING N N 17 YMJ C2 C3 SING N N 18 YMJ C1 N1 SING N N 19 YMJ C1 O5 SING N N 20 YMJ C22 C23 SING N N 21 YMJ C22 C18 SING N N 22 YMJ C15 C23 SING N N 23 YMJ C15 O5 SING N N 24 YMJ C15 C16 SING N N 25 YMJ C19 C18 SING N N 26 YMJ C19 C20 SING N N 27 YMJ C17 C18 SING N N 28 YMJ C17 C16 SING N N 29 YMJ C3 C4 SING N N 30 YMJ C4 C6 SING N N 31 YMJ C21 C20 SING N N 32 YMJ C21 H1 SING N N 33 YMJ C21 H2 SING N N 34 YMJ C21 H3 SING N N 35 YMJ C14 S1 SING N N 36 YMJ C14 H5 SING N N 37 YMJ C13 H6 SING N N 38 YMJ C13 H7 SING N N 39 YMJ C12 H8 SING N N 40 YMJ C12 H9 SING N N 41 YMJ C16 H10 SING N N 42 YMJ C16 H11 SING N N 43 YMJ C15 H12 SING N N 44 YMJ C18 H13 SING N N 45 YMJ C19 H14 SING N N 46 YMJ C19 H15 SING N N 47 YMJ C10 H16 SING N N 48 YMJ C17 H17 SING N N 49 YMJ C17 H18 SING N N 50 YMJ C2 H19 SING N N 51 YMJ C20 H20 SING N N 52 YMJ C20 H21 SING N N 53 YMJ C22 H22 SING N N 54 YMJ C22 H23 SING N N 55 YMJ C23 H24 SING N N 56 YMJ C23 H25 SING N N 57 YMJ C3 H26 SING N N 58 YMJ C3 H27 SING N N 59 YMJ C4 H28 SING N N 60 YMJ C5 H29 SING N N 61 YMJ C5 H30 SING N N 62 YMJ C5 H31 SING N N 63 YMJ C6 H32 SING N N 64 YMJ C6 H33 SING N N 65 YMJ C6 H34 SING N N 66 YMJ C8 H35 SING N N 67 YMJ C9 H36 SING N N 68 YMJ C9 H37 SING N N 69 YMJ N1 H38 SING N N 70 YMJ N2 H39 SING N N 71 YMJ N3 H40 SING N N 72 YMJ O3 H41 SING N N 73 YMJ S1 O7 DOUB N N 74 YMJ S1 O6 DOUB N N 75 YMJ S1 O8 SING N N 76 YMJ O8 H4 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YMJ SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OC1CCC(CCC)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YMJ InChI InChI 1.03 "InChI=1S/C23H41N3O8S/c1-4-5-15-6-8-17(9-7-15)34-23(30)26-18(12-14(2)3)21(28)25-19(22(29)35(31,32)33)13-16-10-11-24-20(16)27/h14-19,22,29H,4-13H2,1-3H3,(H,24,27)(H,25,28)(H,26,30)(H,31,32,33)/t15-,16-,17-,18-,19-,22+/m0/s1" YMJ InChIKey InChI 1.03 VCQYBHSDNWQLAS-ZXLNZJBRSA-N YMJ SMILES_CANONICAL CACTVS 3.385 "CCC[C@@H]1CC[C@H](CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O" YMJ SMILES CACTVS 3.385 "CCC[CH]1CC[CH](CC1)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YMJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O" YMJ SMILES "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YMJ "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1s,4S)-4-propylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid" YMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-propylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YMJ "Create component" 2021-03-12 RCSB YMJ "Initial release" 2021-03-24 RCSB YMJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YMJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #