data_YML # _chem_comp.id YML _chem_comp.name "[(3R,4S,5S,7R)-4,8-DIHYDROXY-3,5,7-TRIMETHYL-2-OXOOCTYL]PHOSPHONIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H23 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-06-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YML _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YML C8 C8 C 0 1 N N R 42.460 49.013 15.386 4.430 0.210 -0.545 C8 YML 1 YML C4 C4 C 0 1 N N R 43.655 52.377 12.767 -0.457 -0.660 0.010 C4 YML 2 YML C3 C3 C 0 1 N N N 44.206 51.520 11.592 -1.826 -0.032 0.001 C3 YML 3 YML C7 C7 C 0 1 N N N 42.696 50.522 15.159 3.038 0.845 -0.576 C7 YML 4 YML C6 C6 C 0 1 N N S 44.174 50.846 14.856 1.980 -0.235 -0.341 C6 YML 5 YML C2 C2 C 0 1 N N N 43.557 50.181 11.213 -3.034 -0.861 -0.352 C2 YML 6 YML C5 C5 C 0 1 N N S 44.365 52.202 14.144 0.602 0.419 -0.225 C5 YML 7 YML C9 C9 C 0 1 N N N 42.604 48.202 14.088 4.719 -0.317 0.862 C9 YML 8 YML P1 P1 P 0 1 N N R 44.761 48.842 10.750 -4.529 0.179 -0.274 P1 YML 9 YML O1P O1P O 0 1 N N N 45.348 48.243 12.137 -5.820 -0.708 -0.651 O1P YML 10 YML O2P O2P O 0 1 N N N 44.161 47.814 9.880 -4.684 0.717 1.096 O2P YML 11 YML OC3 OC3 O 0 1 N N N 45.139 51.943 10.909 -1.956 1.137 0.277 OC3 YML 12 YML CAC CAC C 0 1 N N N 43.769 53.854 12.345 -0.211 -1.329 1.364 CAC YML 13 YML OC5 OC5 O 0 1 N N N 43.940 53.239 15.073 0.599 1.335 0.871 OC5 YML 14 YML CAB CAB C 0 1 N N N 45.012 50.837 16.144 1.983 -1.216 -1.515 CAB YML 15 YML CAA CAA C 0 1 N N N 41.071 48.798 15.980 5.478 1.260 -0.921 CAA YML 16 YML OC9 OC9 O 0 1 N N N 43.463 47.071 14.310 5.967 -1.012 0.864 OC9 YML 17 YML H8 H8 H 0 1 N N N 43.230 48.655 16.085 4.470 -0.614 -1.257 H8 YML 18 YML H4 H4 H 0 1 N N N 42.624 52.032 12.938 -0.395 -1.408 -0.781 H4 YML 19 YML H71 1H7 H 0 1 N N N 42.399 51.063 16.070 2.966 1.601 0.206 H71 YML 20 YML H72 2H7 H 0 1 N N N 42.098 50.830 14.289 2.873 1.310 -1.548 H72 YML 21 YML H6 H6 H 0 1 N N N 44.518 50.056 14.173 2.206 -0.771 0.581 H6 YML 22 YML H21 1H2 H 0 1 N N N 42.901 50.358 10.348 -2.920 -1.258 -1.361 H21 YML 23 YML H22 2H2 H 0 1 N N N 43.020 49.827 12.106 -3.127 -1.686 0.354 H22 YML 24 YML H5 H5 H 0 1 N N N 45.431 52.268 13.879 0.375 0.955 -1.147 H5 YML 25 YML H91 1H9 H 0 1 N N N 43.039 48.841 13.306 4.767 0.519 1.561 H91 YML 26 YML H92 2H9 H 0 1 N N N 41.612 47.847 13.771 3.923 -0.998 1.165 H92 YML 27 YML HP1 HP1 H 0 1 N N N 45.818 49.371 9.964 -4.408 1.253 -1.194 HP1 YML 28 YML HO1P HO1P H 0 0 N N N 45.463 47.304 12.053 -6.587 -0.121 -0.597 HO1P YML 29 YML HAC1 1HAC H 0 0 N N N 43.796 54.491 13.241 -0.273 -0.581 2.155 HAC1 YML 30 YML HAC2 2HAC H 0 0 N N N 44.692 53.999 11.764 -0.965 -2.098 1.531 HAC2 YML 31 YML HAC3 3HAC H 0 0 N N N 42.900 54.127 11.728 0.779 -1.784 1.370 HAC3 YML 32 YML HOC5 HOC5 H 0 0 N N N 43.847 52.867 15.942 0.803 0.822 1.665 HOC5 YML 33 YML HAB1 1HAB H 0 0 N N N 46.081 50.835 15.886 2.988 -1.612 -1.655 HAB1 YML 34 YML HAB2 2HAB H 0 0 N N N 44.780 51.733 16.738 1.295 -2.035 -1.305 HAB2 YML 35 YML HAB3 3HAB H 0 0 N N N 44.774 49.937 16.729 1.667 -0.699 -2.421 HAB3 YML 36 YML HAA1 1HAA H 0 0 N N N 41.144 48.746 17.076 6.475 0.830 -0.822 HAA1 YML 37 YML HAA2 2HAA H 0 0 N N N 40.417 49.636 15.696 5.320 1.578 -1.951 HAA2 YML 38 YML HAA3 3HAA H 0 0 N N N 40.650 47.857 15.596 5.386 2.119 -0.257 HAA3 YML 39 YML HOC9 HOC9 H 0 0 N N N 43.653 46.649 13.480 6.111 -1.327 1.767 HOC9 YML 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YML C8 C7 SING N N 1 YML C8 C9 SING N N 2 YML C8 CAA SING N N 3 YML C8 H8 SING N N 4 YML C4 C3 SING N N 5 YML C4 C5 SING N N 6 YML C4 CAC SING N N 7 YML C4 H4 SING N N 8 YML C3 C2 SING N N 9 YML C3 OC3 DOUB N N 10 YML C7 C6 SING N N 11 YML C7 H71 SING N N 12 YML C7 H72 SING N N 13 YML C6 C5 SING N N 14 YML C6 CAB SING N N 15 YML C6 H6 SING N N 16 YML C2 P1 SING N N 17 YML C2 H21 SING N N 18 YML C2 H22 SING N N 19 YML C5 OC5 SING N N 20 YML C5 H5 SING N N 21 YML C9 OC9 SING N N 22 YML C9 H91 SING N N 23 YML C9 H92 SING N N 24 YML P1 O1P SING N N 25 YML P1 O2P DOUB N N 26 YML P1 HP1 SING N N 27 YML O1P HO1P SING N N 28 YML CAC HAC1 SING N N 29 YML CAC HAC2 SING N N 30 YML CAC HAC3 SING N N 31 YML OC5 HOC5 SING N N 32 YML CAB HAB1 SING N N 33 YML CAB HAB2 SING N N 34 YML CAB HAB3 SING N N 35 YML CAA HAA1 SING N N 36 YML CAA HAA2 SING N N 37 YML CAA HAA3 SING N N 38 YML OC9 HOC9 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YML SMILES ACDLabs 10.04 "O=C(C(C(O)C(C)CC(C)CO)C)CP(=O)O" YML SMILES_CANONICAL CACTVS 3.341 "C[C@@H](CO)C[C@H](C)[C@H](O)[C@@H](C)C(=O)C[P@@H](O)=O" YML SMILES CACTVS 3.341 "C[CH](CO)C[CH](C)[CH](O)[CH](C)C(=O)C[PH](O)=O" YML SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](C[C@H](C)[C@@H]([C@@H](C)C(=O)C[P@H](=O)O)O)CO" YML SMILES "OpenEye OEToolkits" 1.5.0 "CC(CC(C)C(C(C)C(=O)CP(=O)O)O)CO" YML InChI InChI 1.03 "InChI=1S/C11H23O5P/c1-7(5-12)4-8(2)11(14)9(3)10(13)6-17(15)16/h7-9,11-12,14,17H,4-6H2,1-3H3,(H,15,16)/t7-,8+,9+,11+/m1/s1" YML InChIKey InChI 1.03 OMENZZONRIXNPG-HJGDQZAQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YML "SYSTEMATIC NAME" ACDLabs 10.04 "(R)-[(3R,4S,5S,7R)-4,8-dihydroxy-3,5,7-trimethyl-2-oxooctyl]phosphinic acid" YML "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(3R,4S,5S,7R)-4,8-dihydroxy-3,5,7-trimethyl-2-oxo-octyl]phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YML "Create component" 2006-06-26 RCSB YML "Modify descriptor" 2011-06-04 RCSB #