data_YMM # _chem_comp.id YMM _chem_comp.name "(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H41 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.652 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YMM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YMM C1 C1 C 0 1 N N N N N N 10.583 7.567 22.133 2.360 -0.007 0.238 C1 YMM 1 YMM C10 C2 C 0 1 N N S N N N 7.198 6.127 19.073 -4.285 2.264 -0.448 C10 YMM 2 YMM C11 C3 C 0 1 N N N N N N 6.691 6.974 17.923 -5.344 2.889 -1.329 C11 YMM 3 YMM C12 C4 C 0 1 N N N N N N 5.506 7.655 19.809 -4.597 4.585 0.071 C12 YMM 4 YMM C13 C5 C 0 1 N N N N N N 6.115 6.305 20.131 -4.125 3.265 0.720 C13 YMM 5 YMM C14 C6 C 0 1 N N S N N N 8.026 2.367 19.614 -4.185 -0.998 1.590 C14 YMM 6 YMM C15 C7 C 0 1 N N N N N N 10.430 9.920 22.534 4.720 0.318 0.383 C15 YMM 7 YMM C16 C8 C 0 1 N N N N N N 11.332 10.847 23.315 5.373 -0.986 -0.079 C16 YMM 8 YMM C17 C9 C 0 1 N N N N N N 11.114 12.300 22.895 6.710 -0.675 -0.756 C17 YMM 9 YMM C18 C10 C 0 1 N N N N N N 9.658 12.722 23.060 7.632 0.034 0.238 C18 YMM 10 YMM C19 C11 C 0 1 N N N N N N 9.436 14.173 22.646 8.968 0.345 -0.438 C19 YMM 11 YMM C2 C12 C 0 1 N N S N N N 10.813 5.147 22.085 -0.037 -0.307 -0.086 C2 YMM 12 YMM C20 C13 C 0 1 N N N N N N 10.102 15.214 23.530 9.934 0.940 0.589 C20 YMM 13 YMM C21 C14 C 0 1 N N N N N N 9.531 16.595 23.315 11.270 1.252 -0.088 C21 YMM 14 YMM C22 C15 C 0 1 N N N N N N 8.751 11.764 22.297 6.978 1.337 0.701 C22 YMM 15 YMM C23 C16 C 0 1 N N N N N N 8.979 10.308 22.705 5.642 1.026 1.377 C23 YMM 16 YMM C3 C17 C 0 1 N N N N N N 11.448 4.092 22.985 -0.171 -1.693 -0.720 C3 YMM 17 YMM C4 C18 C 0 1 N N N N N N 12.957 4.249 23.164 1.011 -1.942 -1.658 C4 YMM 18 YMM C5 C19 C 0 1 N N N N N N 13.695 3.828 21.903 0.944 -3.373 -2.196 C5 YMM 19 YMM C6 C20 C 0 1 N N N N N N 13.451 3.451 24.356 0.952 -0.955 -2.826 C6 YMM 20 YMM C7 C21 C 0 1 N N N N N N 9.396 4.752 21.684 -1.261 -0.012 0.741 C7 YMM 21 YMM C8 C22 C 0 1 N N S N N N 7.943 3.854 19.912 -3.667 0.299 0.965 C8 YMM 22 YMM C9 C23 C 0 1 N N N N N N 7.520 4.681 18.701 -4.753 0.904 0.073 C9 YMM 23 YMM N1 N1 N 0 1 N N N N N N 10.849 6.428 22.761 1.151 -0.276 0.771 N1 YMM 24 YMM N2 N2 N 0 1 N N N N N N 9.227 4.332 20.427 -2.477 0.012 0.161 N2 YMM 25 YMM N3 N3 N 0 1 N N N N N N 5.692 7.734 18.364 -5.502 4.186 -1.013 N3 YMM 26 YMM O1 O1 O 0 1 N N N N N N 10.372 7.706 20.943 2.463 0.213 -0.953 O1 YMM 27 YMM O2 O2 O 0 1 N N N N N N 7.148 6.973 16.770 -5.960 2.305 -2.195 O2 YMM 28 YMM O3 O3 O 0 1 N N N N N N 6.749 1.832 19.322 -5.410 -0.739 2.279 O3 YMM 29 YMM O4 O4 O 0 1 N N N N N N 8.477 4.835 22.492 -1.152 0.203 1.930 O4 YMM 30 YMM O5 O5 O 0 1 N N N N N N 10.605 8.563 23.042 3.451 0.022 1.025 O5 YMM 31 YMM H1 H1 H 0 1 N N N N N N 8.120 6.590 19.454 -3.347 2.161 -0.993 H1 YMM 32 YMM H2 H2 H 0 1 N N N N N N 6.038 8.467 20.326 -5.129 5.195 0.801 H2 YMM 33 YMM H3 H3 H 0 1 N N N N N N 4.440 7.687 20.077 -3.744 5.134 -0.329 H3 YMM 34 YMM H4 H4 H 0 1 N N N N N N 5.361 5.508 20.056 -4.766 2.991 1.559 H4 YMM 35 YMM H5 H5 H 0 1 N N N N N N 6.551 6.304 21.141 -3.083 3.335 1.034 H5 YMM 36 YMM S1 S1 S 0 1 N Y N N N N 8.690 2.196 18.793 -4.472 -2.226 0.285 S1 YMM 37 YMM H7 H7 H 0 1 N N N N N N 8.369 1.893 20.545 -3.447 -1.383 2.294 H7 YMM 38 YMM H8 H8 H 0 1 N N N N N N 10.697 9.963 21.468 4.549 0.964 -0.478 H8 YMM 39 YMM H9 H9 H 0 1 N N N N N N 11.111 10.745 24.388 5.544 -1.632 0.782 H9 YMM 40 YMM H10 H10 H 0 1 N N N N N N 12.380 10.571 23.128 4.716 -1.491 -0.788 H10 YMM 41 YMM H11 H11 H 0 1 N N N N N N 11.400 12.413 21.839 7.176 -1.603 -1.085 H11 YMM 42 YMM H12 H12 H 0 1 N N N N N N 11.746 12.950 23.518 6.539 -0.029 -1.617 H12 YMM 43 YMM H13 H13 H 0 1 N N N N N N 9.407 12.639 24.128 7.803 -0.612 1.099 H13 YMM 44 YMM H14 H14 H 0 1 N N N N N N 9.824 14.297 21.624 9.392 -0.572 -0.846 H14 YMM 45 YMM H15 H15 H 0 1 N N N N N N 8.353 14.366 22.653 8.809 1.061 -1.245 H15 YMM 46 YMM H16 H16 H 0 1 N N N N N N 11.416 5.214 21.168 0.061 0.443 -0.871 H16 YMM 47 YMM H17 H17 H 0 1 N N N N N N 9.956 14.930 24.583 9.510 1.858 0.997 H17 YMM 48 YMM H18 H18 H 0 1 N N N N N N 11.178 15.236 23.302 10.093 0.224 1.395 H18 YMM 49 YMM H19 H19 H 0 1 N N N N N N 10.043 17.311 23.975 11.958 1.676 0.644 H19 YMM 50 YMM H20 H20 H 0 1 N N N N N N 9.678 16.893 22.266 11.694 0.334 -0.495 H20 YMM 51 YMM H21 H21 H 0 1 N N N N N N 8.456 16.587 23.547 11.111 1.968 -0.894 H21 YMM 52 YMM H22 H22 H 0 1 N N N N N N 8.953 11.866 21.220 7.635 1.842 1.409 H22 YMM 53 YMM H23 H23 H 0 1 N N N N N N 7.703 12.030 22.501 6.808 1.984 -0.161 H23 YMM 54 YMM H24 H24 H 0 1 N N N N N N 8.694 10.181 23.760 5.176 1.955 1.707 H24 YMM 55 YMM H25 H25 H 0 1 N N N N N N 8.355 9.656 22.076 5.812 0.380 2.238 H25 YMM 56 YMM H26 H26 H 0 1 N N N N N N 10.975 4.154 23.976 -0.180 -2.452 0.063 H26 YMM 57 YMM H27 H27 H 0 1 N N N N N N 11.254 3.102 22.547 -1.101 -1.745 -1.286 H27 YMM 58 YMM H28 H28 H 0 1 N N N N N N 13.171 5.312 23.349 1.944 -1.803 -1.112 H28 YMM 59 YMM H29 H29 H 0 1 N N N N N N 14.778 3.949 22.054 0.011 -3.512 -2.742 H29 YMM 60 YMM H30 H30 H 0 1 N N N N N N 13.471 2.774 21.682 1.786 -3.550 -2.864 H30 YMM 61 YMM H31 H31 H 0 1 N N N N N N 13.370 4.456 21.061 0.986 -4.076 -1.364 H31 YMM 62 YMM H32 H32 H 0 1 N N N N N N 12.908 3.766 25.259 1.000 0.064 -2.443 H32 YMM 63 YMM H33 H33 H 0 1 N N N N N N 13.275 2.380 24.178 1.795 -1.133 -3.495 H33 YMM 64 YMM H34 H34 H 0 1 N N N N N N 14.528 3.628 24.495 0.019 -1.094 -3.373 H34 YMM 65 YMM H35 H35 H 0 1 N N N N N N 7.182 3.996 20.693 -3.411 1.005 1.755 H35 YMM 66 YMM H36 H36 H 0 1 N N N N N N 6.625 4.223 18.254 -5.669 1.031 0.650 H36 YMM 67 YMM H37 H37 H 0 1 N N N N N N 8.339 4.678 17.967 -4.943 0.238 -0.769 H37 YMM 68 YMM H38 H38 H 0 1 N N N N N N 11.082 6.455 23.733 1.068 -0.448 1.722 H38 YMM 69 YMM H39 H39 H 0 1 N N N N N N 10.014 4.345 19.810 -2.564 -0.160 -0.790 H39 YMM 70 YMM H40 H40 H 0 1 N N N N N N 5.126 8.302 17.766 -6.132 4.782 -1.447 H40 YMM 71 YMM H41 H41 H 0 1 N N N N N N 6.828 0.903 19.140 -6.114 -0.395 1.713 H41 YMM 72 YMM O6 O6 O 0 1 N Y N N N N ? ? ? -5.489 -1.781 -0.603 O6 YMM 73 YMM O7 O7 O 0 1 N Y N N N N ? ? ? -3.238 -2.728 -0.207 O7 YMM 74 YMM O8 O8 O 0 1 N Y N N N N ? ? ? -5.098 -3.409 1.009 O8 YMM 75 YMM H6 H6 H 0 1 N Y N N N N ? ? ? -5.311 -4.155 0.431 H6 YMM 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YMM O2 C11 DOUB N N 1 YMM C11 N3 SING N N 2 YMM C11 C10 SING N N 3 YMM N3 C12 SING N N 4 YMM C9 C10 SING N N 5 YMM C9 C8 SING N N 6 YMM C10 C13 SING N N 7 YMM O3 C14 SING N N 8 YMM C14 C8 SING N N 9 YMM C12 C13 SING N N 10 YMM C8 N2 SING N N 11 YMM N2 C7 SING N N 12 YMM O1 C1 DOUB N N 13 YMM C7 C2 SING N N 14 YMM C7 O4 DOUB N N 15 YMM C5 C4 SING N N 16 YMM C2 N1 SING N N 17 YMM C2 C3 SING N N 18 YMM C1 N1 SING N N 19 YMM C1 O5 SING N N 20 YMM C22 C23 SING N N 21 YMM C22 C18 SING N N 22 YMM C15 C23 SING N N 23 YMM C15 O5 SING N N 24 YMM C15 C16 SING N N 25 YMM C19 C18 SING N N 26 YMM C19 C20 SING N N 27 YMM C17 C18 SING N N 28 YMM C17 C16 SING N N 29 YMM C3 C4 SING N N 30 YMM C4 C6 SING N N 31 YMM C21 C20 SING N N 32 YMM C10 H1 SING N N 33 YMM C12 H2 SING N N 34 YMM C12 H3 SING N N 35 YMM C13 H4 SING N N 36 YMM C13 H5 SING N N 37 YMM C14 S1 SING N N 38 YMM C14 H7 SING N N 39 YMM C15 H8 SING N N 40 YMM C16 H9 SING N N 41 YMM C16 H10 SING N N 42 YMM C17 H11 SING N N 43 YMM C17 H12 SING N N 44 YMM C18 H13 SING N N 45 YMM C19 H14 SING N N 46 YMM C19 H15 SING N N 47 YMM C2 H16 SING N N 48 YMM C20 H17 SING N N 49 YMM C20 H18 SING N N 50 YMM C21 H19 SING N N 51 YMM C21 H20 SING N N 52 YMM C21 H21 SING N N 53 YMM C22 H22 SING N N 54 YMM C22 H23 SING N N 55 YMM C23 H24 SING N N 56 YMM C23 H25 SING N N 57 YMM C3 H26 SING N N 58 YMM C3 H27 SING N N 59 YMM C4 H28 SING N N 60 YMM C5 H29 SING N N 61 YMM C5 H30 SING N N 62 YMM C5 H31 SING N N 63 YMM C6 H32 SING N N 64 YMM C6 H33 SING N N 65 YMM C6 H34 SING N N 66 YMM C8 H35 SING N N 67 YMM C9 H36 SING N N 68 YMM C9 H37 SING N N 69 YMM N1 H38 SING N N 70 YMM N2 H39 SING N N 71 YMM N3 H40 SING N N 72 YMM O3 H41 SING N N 73 YMM S1 O6 DOUB N N 74 YMM S1 O7 DOUB N N 75 YMM S1 O8 SING N N 76 YMM O8 H6 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YMM SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OC1CCC(CCC)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YMM InChI InChI 1.03 "InChI=1S/C23H41N3O8S/c1-4-5-15-6-8-17(9-7-15)34-23(30)26-18(12-14(2)3)21(28)25-19(22(29)35(31,32)33)13-16-10-11-24-20(16)27/h14-19,22,29H,4-13H2,1-3H3,(H,24,27)(H,25,28)(H,26,30)(H,31,32,33)/t15-,16-,17-,18-,19-,22-/m0/s1" YMM InChIKey InChI 1.03 VCQYBHSDNWQLAS-LXYCOOOUSA-N YMM SMILES_CANONICAL CACTVS 3.385 "CCC[C@@H]1CC[C@H](CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O" YMM SMILES CACTVS 3.385 "CCC[CH]1CC[CH](CC1)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" YMM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O" YMM SMILES "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YMM "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1s,4S)-4-propylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid" YMM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-propylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YMM "Create component" 2021-03-12 RCSB YMM "Initial release" 2021-03-24 RCSB YMM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YMM _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #