data_YMQ # _chem_comp.id YMQ _chem_comp.name "9,11-bis(4-methoxyphenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 N2 O6 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2023-07-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 578.544 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YMQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PFV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YMQ C12 C1 C 0 1 Y N N -40.612 -2.416 -20.260 4.634 -1.125 0.144 C12 YMQ 1 YMQ C22 C2 C 0 1 N N N -38.350 -7.755 -11.893 -6.967 -2.255 0.642 C22 YMQ 2 YMQ C13 C3 C 0 1 Y N N -40.133 -3.669 -19.995 3.384 -0.585 0.377 C13 YMQ 3 YMQ C23 C4 C 0 1 N N N -41.991 0.075 -21.787 7.106 -2.112 -0.324 C23 YMQ 4 YMQ C15 C5 C 0 1 Y N N -39.738 -7.539 -16.825 -2.285 -1.378 -0.683 C15 YMQ 5 YMQ C16 C6 C 0 1 Y N N -38.559 -8.016 -16.268 -2.425 -2.758 -0.742 C16 YMQ 6 YMQ C17 C7 C 0 1 Y N N -38.464 -8.108 -14.910 -3.636 -3.343 -0.425 C17 YMQ 7 YMQ RU1 RU1 RU 0 0 N N N -40.020 -7.650 -21.259 1.065 1.036 0.667 RU1 YMQ 8 YMQ RU2 RU2 RU 0 0 N N N -39.600 -9.045 -19.508 -1.108 1.103 -0.693 RU2 YMQ 9 YMQ O1 O1 O 0 1 N N N -41.966 -8.282 -21.273 0.316 2.024 2.000 O1 YMQ 10 YMQ O2 O2 O 0 1 N N N -41.573 -9.603 -19.518 -2.039 1.752 0.726 O2 YMQ 11 YMQ O3 O3 O 0 1 N N N -39.576 -9.207 -22.521 1.992 1.834 -0.676 O3 YMQ 12 YMQ O4 O4 O 0 1 N N N -39.198 -10.565 -20.823 -0.365 2.229 -1.914 O4 YMQ 13 YMQ N2 N1 N 0 1 N N N -39.842 -7.480 -18.220 -1.061 -0.784 -1.009 N2 YMQ 14 YMQ N1 N2 N 0 1 N N N -40.494 -6.154 -19.954 1.020 -0.875 0.780 N1 YMQ 15 YMQ C1 C8 C 0 1 N N N -42.357 -9.075 -20.364 -1.109 2.044 1.788 C1 YMQ 16 YMQ C7 C9 C 0 1 N N N -40.267 -6.319 -18.680 0.040 -1.366 -0.212 C7 YMQ 17 YMQ C3 C10 C 0 1 N N N -39.297 -10.322 -22.055 1.061 2.233 -1.701 C3 YMQ 18 YMQ C2 C11 C 0 1 N N N -43.810 -9.406 -20.374 -1.517 3.447 2.242 C2 YMQ 19 YMQ C20 C12 C 0 1 Y N N -40.811 -7.115 -16.038 -3.362 -0.587 -0.305 C20 YMQ 20 YMQ C9 C13 C 0 1 Y N N -42.205 -4.618 -20.730 2.449 -2.798 0.478 C9 YMQ 21 YMQ C10 C14 C 0 1 Y N N -42.664 -3.351 -20.974 3.697 -3.336 0.234 C10 YMQ 22 YMQ C8 C15 C 0 1 Y N N -40.955 -4.812 -20.271 2.287 -1.421 0.544 C8 YMQ 23 YMQ C11 C16 C 0 1 Y N N -41.887 -2.233 -20.807 4.793 -2.501 0.072 C11 YMQ 24 YMQ O7 O5 O 0 1 N N N -42.516 -0.975 -21.075 6.022 -3.031 -0.168 O7 YMQ 25 YMQ C4 C17 C 0 1 N N N -39.065 -11.477 -22.971 1.462 3.677 -2.005 C4 YMQ 26 YMQ C18 C18 C 0 1 Y N N -39.496 -7.683 -14.104 -4.711 -2.553 -0.048 C18 YMQ 27 YMQ C19 C19 C 0 1 Y N N -40.658 -7.166 -14.637 -4.572 -1.174 0.012 C19 YMQ 28 YMQ O8 O6 O 0 1 N N N -39.496 -7.729 -12.733 -5.903 -3.129 0.262 O8 YMQ 29 YMQ H1 H1 H 0 1 N N N -39.997 -1.555 -20.044 5.486 -0.475 0.014 H1 YMQ 30 YMQ H2 H2 H 0 1 N N N -38.667 -7.791 -10.840 -6.675 -1.691 1.528 H2 YMQ 31 YMQ H3 H3 H 0 1 N N N -37.746 -8.645 -12.124 -7.180 -1.565 -0.174 H3 YMQ 32 YMQ H4 H4 H 0 1 N N N -37.749 -6.849 -12.064 -7.859 -2.842 0.863 H4 YMQ 33 YMQ H5 H5 H 0 1 N N N -39.144 -3.797 -19.581 3.259 0.486 0.429 H5 YMQ 34 YMQ H6 H6 H 0 1 N N N -42.719 0.899 -21.816 6.902 -1.450 -1.166 H6 YMQ 35 YMQ H7 H7 H 0 1 N N N -41.065 0.420 -21.303 7.214 -1.521 0.585 H7 YMQ 36 YMQ H8 H8 H 0 1 N N N -41.768 -0.253 -22.813 8.026 -2.665 -0.511 H8 YMQ 37 YMQ H9 H9 H 0 1 N N N -37.732 -8.309 -16.898 -1.588 -3.374 -1.036 H9 YMQ 38 YMQ H10 H10 H 0 1 N N N -37.571 -8.518 -14.463 -3.745 -4.417 -0.471 H10 YMQ 39 YMQ H11 H11 H 0 1 N N N -42.542 -8.229 -19.686 -1.499 1.472 2.630 H11 YMQ 40 YMQ H12 H12 H 0 1 N N N -39.512 -5.572 -18.395 -0.421 -2.222 0.280 H12 YMQ 41 YMQ H13 H13 H 0 1 N N N -41.212 -6.101 -18.161 0.653 -1.880 -0.952 H13 YMQ 42 YMQ H14 H14 H 0 1 N N N -38.226 -10.073 -22.094 1.452 1.755 -2.599 H14 YMQ 43 YMQ H15 H15 H 0 1 N N N -44.035 -10.096 -19.548 -0.997 4.190 1.638 H15 YMQ 44 YMQ H16 H16 H 0 1 N N N -44.397 -8.484 -20.251 -2.593 3.569 2.122 H16 YMQ 45 YMQ H17 H17 H 0 1 N N N -44.071 -9.882 -21.331 -1.251 3.580 3.291 H17 YMQ 46 YMQ H18 H18 H 0 1 N N N -41.727 -6.760 -16.487 -3.254 0.486 -0.258 H18 YMQ 47 YMQ H19 H19 H 0 1 N N N -42.850 -5.466 -20.907 1.597 -3.449 0.608 H19 YMQ 48 YMQ H20 H20 H 0 1 N N N -43.682 -3.227 -21.313 3.822 -4.407 0.178 H20 YMQ 49 YMQ H21 H21 H 0 1 N N N -38.832 -12.374 -22.379 2.496 3.702 -2.351 H21 YMQ 50 YMQ H22 H22 H 0 1 N N N -39.970 -11.658 -23.569 0.810 4.080 -2.780 H22 YMQ 51 YMQ H23 H23 H 0 1 N N N -38.222 -11.250 -23.641 1.367 4.279 -1.101 H23 YMQ 52 YMQ H24 H24 H 0 1 N N N -41.442 -6.804 -13.989 -5.410 -0.559 0.306 H24 YMQ 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YMQ C4 C3 SING N N 1 YMQ O3 C3 SING N N 2 YMQ O3 RU1 SING N N 3 YMQ C3 O4 SING N N 4 YMQ C23 O7 SING N N 5 YMQ O1 RU1 SING N N 6 YMQ O1 C1 SING N N 7 YMQ RU1 N1 SING N N 8 YMQ RU1 RU2 SING N N 9 YMQ O7 C11 SING N N 10 YMQ C10 C11 DOUB Y N 11 YMQ C10 C9 SING Y N 12 YMQ O4 RU2 SING N N 13 YMQ C11 C12 SING Y N 14 YMQ C9 C8 DOUB Y N 15 YMQ C2 C1 SING N N 16 YMQ C1 O2 SING N N 17 YMQ C8 C13 SING Y N 18 YMQ C8 N1 SING N N 19 YMQ C12 C13 DOUB Y N 20 YMQ N1 C7 SING N N 21 YMQ O2 RU2 SING N N 22 YMQ RU2 N2 SING N N 23 YMQ C7 N2 SING N N 24 YMQ N2 C15 SING N N 25 YMQ C15 C16 DOUB Y N 26 YMQ C15 C20 SING Y N 27 YMQ C16 C17 SING Y N 28 YMQ C20 C19 DOUB Y N 29 YMQ C17 C18 DOUB Y N 30 YMQ C19 C18 SING Y N 31 YMQ C18 O8 SING N N 32 YMQ O8 C22 SING N N 33 YMQ C12 H1 SING N N 34 YMQ C22 H2 SING N N 35 YMQ C22 H3 SING N N 36 YMQ C22 H4 SING N N 37 YMQ C13 H5 SING N N 38 YMQ C23 H6 SING N N 39 YMQ C23 H7 SING N N 40 YMQ C23 H8 SING N N 41 YMQ C16 H9 SING N N 42 YMQ C17 H10 SING N N 43 YMQ C1 H11 SING N N 44 YMQ C7 H12 SING N N 45 YMQ C7 H13 SING N N 46 YMQ C3 H14 SING N N 47 YMQ C2 H15 SING N N 48 YMQ C2 H16 SING N N 49 YMQ C2 H17 SING N N 50 YMQ C20 H18 SING N N 51 YMQ C9 H19 SING N N 52 YMQ C10 H20 SING N N 53 YMQ C4 H21 SING N N 54 YMQ C4 H22 SING N N 55 YMQ C4 H23 SING N N 56 YMQ C19 H24 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YMQ InChI InChI 1.06 "InChI=1S/C15H16N2O2.2C2H4O2.2Ru/c1-18-14-7-3-12(4-8-14)16-11-17-13-5-9-15(19-2)10-6-13;2*1-2(3)4;;/h3-10H,11H2,1-2H3;2*2H,1H3;;/q3*-2;2*+3" YMQ InChIKey InChI 1.06 ILDPKHMKTATIQB-UHFFFAOYSA-N YMQ SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)N2CN(c3ccc(OC)cc3)[Ru]45O[C@@H](C)O[Ru]24O[C@@H](C)O5" YMQ SMILES CACTVS 3.385 "COc1ccc(cc1)N2CN(c3ccc(OC)cc3)[Ru]45O[CH](C)O[Ru]24O[CH](C)O5" YMQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]23N(CN([Ru]2(O1)OC(O3)C)c4ccc(cc4)OC)c5ccc(cc5)OC" YMQ SMILES "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]23N(CN([Ru]2(O1)OC(O3)C)c4ccc(cc4)OC)c5ccc(cc5)OC" # _pdbx_chem_comp_identifier.comp_id YMQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9,11-bis(4-methoxyphenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YMQ "Create component" 2023-06-19 PDBE YMQ "Initial release" 2023-07-19 RCSB #