data_YMS # _chem_comp.id YMS _chem_comp.name "(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1r,4S)-4-phenylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H39 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 553.668 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YMS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LZZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YMS C02 C1 C 0 1 N N N 10.383 7.547 22.255 1.501 -0.847 0.266 C02 YMS 1 YMS C04 C2 C 0 1 N N S 10.775 5.105 22.005 -0.870 -0.881 -0.297 C04 YMS 2 YMS C05 C3 C 0 1 N N N 11.462 3.996 22.790 -1.214 -2.336 -0.621 C05 YMS 3 YMS C06 C4 C 0 1 N N N 12.947 4.285 22.977 -2.248 -2.378 -1.748 C06 YMS 4 YMS C07 C5 C 0 1 N N N 13.530 3.449 24.113 -1.614 -1.859 -3.040 C07 YMS 5 YMS C08 C6 C 0 1 N N N 13.710 3.996 21.694 -2.721 -3.818 -1.954 C08 YMS 6 YMS C09 C7 C 0 1 N N N 9.383 4.662 21.599 -2.083 -0.193 0.273 C09 YMS 7 YMS C11 C8 C 0 1 N N S 7.824 3.784 19.866 -4.182 1.013 -0.006 C11 YMS 8 YMS C12 C9 C 0 1 N N N 7.350 4.650 18.705 -4.929 0.162 1.023 C12 YMS 9 YMS C13 C10 C 0 1 N N S 7.064 6.027 19.123 -5.514 -1.074 0.336 C13 YMS 10 YMS C14 C11 C 0 1 N N N 6.582 6.884 17.870 -6.251 -1.937 1.336 C14 YMS 11 YMS C16 C12 C 0 1 N N N 5.307 7.322 19.828 -7.626 -1.808 -0.532 C16 YMS 12 YMS C17 C13 C 0 1 N N N 5.871 6.088 20.055 -6.601 -0.662 -0.684 C17 YMS 13 YMS C19 C14 C 0 1 N N R 7.868 2.287 19.528 -3.658 2.283 0.666 C19 YMS 14 YMS C23 C15 C 0 1 N N N 9.932 9.876 22.617 3.855 -0.723 0.638 C23 YMS 15 YMS C24 C16 C 0 1 N N N 11.150 10.795 22.714 4.801 -1.296 1.696 C24 YMS 16 YMS C25 C17 C 0 1 N N N 10.791 12.269 22.500 6.229 -1.310 1.148 C25 YMS 17 YMS C26 C18 C 0 1 N N N 9.670 12.698 23.448 6.656 0.118 0.800 C26 YMS 18 YMS C27 C19 C 0 1 Y N N 9.340 14.198 23.298 8.063 0.104 0.261 C27 YMS 19 YMS C28 C20 C 0 1 Y N N 8.339 14.637 22.439 8.358 -0.616 -0.882 C28 YMS 20 YMS C29 C21 C 0 1 Y N N 8.051 15.990 22.330 9.649 -0.629 -1.377 C29 YMS 21 YMS C30 C22 C 0 1 Y N N 8.769 16.908 23.076 10.645 0.077 -0.729 C30 YMS 22 YMS C31 C23 C 0 1 Y N N 9.766 16.476 23.937 10.350 0.798 0.413 C31 YMS 23 YMS C32 C24 C 0 1 Y N N 10.050 15.123 24.050 9.058 0.815 0.905 C32 YMS 24 YMS C33 C25 C 0 1 N N N 8.430 11.837 23.178 5.710 0.690 -0.257 C33 YMS 25 YMS C34 C26 C 0 1 N N N 8.736 10.365 23.433 4.282 0.704 0.291 C34 YMS 26 YMS N03 N1 N 0 1 N N N 10.652 6.261 22.847 0.219 -0.843 0.682 N03 YMS 27 YMS N10 N2 N 0 1 N N N 9.150 4.216 20.247 -3.057 0.247 -0.548 N10 YMS 28 YMS N15 N3 N 0 1 N N N 5.543 7.631 18.300 -7.432 -2.329 0.826 N15 YMS 29 YMS O01 O1 O 0 1 N N N 10.268 7.668 21.077 1.755 -0.970 -0.916 O01 YMS 30 YMS O18 O2 O 0 1 N N N 7.045 6.857 16.784 -5.837 -2.232 2.437 O18 YMS 31 YMS O20 O3 O 0 1 N N N 8.238 1.621 20.703 -4.752 3.010 1.229 O20 YMS 32 YMS O21 O4 O 0 1 N N N 8.500 4.698 22.383 -2.184 -0.035 1.472 O21 YMS 33 YMS O22 O5 O 0 1 N N N 10.275 8.620 23.139 2.499 -0.710 1.158 O22 YMS 34 YMS H1 H1 H 0 1 N N N 11.365 5.338 21.106 -0.557 -0.370 -1.208 H1 YMS 35 YMS H2 H2 H 0 1 N N N 10.987 3.910 23.778 -0.312 -2.862 -0.936 H2 YMS 36 YMS H3 H3 H 0 1 N N N 11.348 3.048 22.244 -1.624 -2.819 0.267 H3 YMS 37 YMS H4 H4 H 0 1 N N N 13.069 5.349 23.227 -3.099 -1.750 -1.483 H4 YMS 38 YMS H5 H5 H 0 1 N N N 12.979 3.657 25.042 -0.808 -2.527 -3.343 H5 YMS 39 YMS H6 H6 H 0 1 N N N 13.441 2.381 23.865 -2.370 -1.821 -3.825 H6 YMS 40 YMS H7 H7 H 0 1 N N N 14.591 3.706 24.250 -1.214 -0.859 -2.873 H7 YMS 41 YMS H8 H8 H 0 1 N N N 14.778 4.209 21.846 -3.172 -4.188 -1.033 H8 YMS 42 YMS H9 H9 H 0 1 N N N 13.583 2.938 21.422 -3.457 -3.848 -2.756 H9 YMS 43 YMS H10 H10 H 0 1 N N N 13.321 4.632 20.885 -1.870 -4.446 -2.218 H10 YMS 44 YMS H11 H11 H 0 1 N N N 7.135 3.927 20.711 -4.861 1.283 -0.815 H11 YMS 45 YMS H12 H12 H 0 1 N N N 6.434 4.209 18.285 -4.239 -0.151 1.806 H12 YMS 46 YMS H13 H13 H 0 1 N N N 8.134 4.669 17.934 -5.736 0.749 1.463 H13 YMS 47 YMS H14 H14 H 0 1 N N N 7.944 6.501 19.582 -4.726 -1.644 -0.156 H14 YMS 48 YMS H15 H15 H 0 1 N N N 5.794 8.086 20.452 -8.640 -1.425 -0.647 H15 YMS 49 YMS H16 H16 H 0 1 N N N 4.230 7.297 20.051 -7.431 -2.588 -1.268 H16 YMS 50 YMS H17 H17 H 0 1 N N N 5.155 5.286 19.820 -7.045 0.296 -0.415 H17 YMS 51 YMS H18 H18 H 0 1 N N N 6.193 5.997 21.103 -6.196 -0.632 -1.695 H18 YMS 52 YMS S1 S1 S 0 1 N Y N 8.572 2.095 18.745 -2.814 3.314 -0.565 S1 YMS 53 YMS H20 H20 H 0 1 N N N 6.837 1.994 19.281 -2.957 2.013 1.456 H20 YMS 54 YMS H21 H21 H 0 1 N N N 9.633 9.790 21.562 3.894 -1.343 -0.258 H21 YMS 55 YMS H22 H22 H 0 1 N N N 11.880 10.495 21.948 4.762 -0.676 2.592 H22 YMS 56 YMS H23 H23 H 0 1 N N N 11.598 10.682 23.712 4.497 -2.312 1.944 H23 YMS 57 YMS H24 H24 H 0 1 N N N 11.680 12.888 22.690 6.903 -1.717 1.901 H24 YMS 58 YMS H25 H25 H 0 1 N N N 10.459 12.412 21.461 6.269 -1.929 0.252 H25 YMS 59 YMS H26 H26 H 0 1 N N N 10.000 12.518 24.482 6.617 0.737 1.696 H26 YMS 60 YMS H27 H27 H 0 1 N N N 7.782 13.921 21.853 7.580 -1.168 -1.388 H27 YMS 61 YMS H28 H28 H 0 1 N N N 7.269 16.326 21.665 9.879 -1.192 -2.270 H28 YMS 62 YMS H29 H29 H 0 1 N N N 8.552 17.962 22.987 11.653 0.067 -1.116 H29 YMS 63 YMS H30 H30 H 0 1 N N N 10.323 17.194 24.521 11.128 1.350 0.919 H30 YMS 64 YMS H31 H31 H 0 1 N N N 10.825 14.789 24.724 8.827 1.381 1.796 H31 YMS 65 YMS H32 H32 H 0 1 N N N 8.121 11.966 22.130 6.015 1.707 -0.505 H32 YMS 66 YMS H33 H33 H 0 1 N N N 7.615 12.158 23.843 5.749 0.070 -1.153 H33 YMS 67 YMS H34 H34 H 0 1 N N N 7.853 9.767 23.162 3.608 1.112 -0.463 H34 YMS 68 YMS H35 H35 H 0 1 N N N 8.957 10.229 24.502 4.242 1.324 1.186 H35 YMS 69 YMS H36 H36 H 0 1 N N N 10.752 6.174 23.838 0.017 -0.814 1.631 H36 YMS 70 YMS H37 H37 H 0 1 N N N 9.896 4.206 19.582 -3.013 0.056 -1.498 H37 YMS 71 YMS H38 H38 H 0 1 N N N 5.013 8.271 17.744 -8.073 -2.885 1.296 H38 YMS 72 YMS H39 H39 H 0 1 N N N 8.278 0.686 20.539 -5.249 2.519 1.896 H39 YMS 73 YMS O1 O6 O 0 1 N Y N ? ? ? -3.644 3.513 -1.701 O1 YMS 74 YMS O2 O7 O 0 1 N Y N ? ? ? -2.160 4.407 0.065 O2 YMS 75 YMS O3 O8 O 0 1 N Y N ? ? ? -1.678 2.441 -1.077 O3 YMS 76 YMS H19 H19 H 0 1 N Y N ? ? ? -1.130 2.865 -1.752 H19 YMS 77 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YMS O18 C14 DOUB N N 1 YMS C14 N15 SING N N 2 YMS C14 C13 SING N N 3 YMS N15 C16 SING N N 4 YMS C12 C13 SING N N 5 YMS C12 C11 SING N N 6 YMS C13 C17 SING N N 7 YMS C19 C11 SING N N 8 YMS C19 O20 SING N N 9 YMS C16 C17 SING N N 10 YMS C11 N10 SING N N 11 YMS N10 C09 SING N N 12 YMS O01 C02 DOUB N N 13 YMS C09 C04 SING N N 14 YMS C09 O21 DOUB N N 15 YMS C08 C06 SING N N 16 YMS C04 C05 SING N N 17 YMS C04 N03 SING N N 18 YMS C02 N03 SING N N 19 YMS C02 O22 SING N N 20 YMS C29 C28 DOUB Y N 21 YMS C29 C30 SING Y N 22 YMS C28 C27 SING Y N 23 YMS C25 C24 SING N N 24 YMS C25 C26 SING N N 25 YMS C23 C24 SING N N 26 YMS C23 O22 SING N N 27 YMS C23 C34 SING N N 28 YMS C05 C06 SING N N 29 YMS C06 C07 SING N N 30 YMS C30 C31 DOUB Y N 31 YMS C33 C34 SING N N 32 YMS C33 C26 SING N N 33 YMS C27 C26 SING N N 34 YMS C27 C32 DOUB Y N 35 YMS C31 C32 SING Y N 36 YMS C04 H1 SING N N 37 YMS C05 H2 SING N N 38 YMS C05 H3 SING N N 39 YMS C06 H4 SING N N 40 YMS C07 H5 SING N N 41 YMS C07 H6 SING N N 42 YMS C07 H7 SING N N 43 YMS C08 H8 SING N N 44 YMS C08 H9 SING N N 45 YMS C08 H10 SING N N 46 YMS C11 H11 SING N N 47 YMS C12 H12 SING N N 48 YMS C12 H13 SING N N 49 YMS C13 H14 SING N N 50 YMS C16 H15 SING N N 51 YMS C16 H16 SING N N 52 YMS C17 H17 SING N N 53 YMS C17 H18 SING N N 54 YMS C19 S1 SING N N 55 YMS C19 H20 SING N N 56 YMS C23 H21 SING N N 57 YMS C24 H22 SING N N 58 YMS C24 H23 SING N N 59 YMS C25 H24 SING N N 60 YMS C25 H25 SING N N 61 YMS C26 H26 SING N N 62 YMS C28 H27 SING N N 63 YMS C29 H28 SING N N 64 YMS C30 H29 SING N N 65 YMS C31 H30 SING N N 66 YMS C32 H31 SING N N 67 YMS C33 H32 SING N N 68 YMS C33 H33 SING N N 69 YMS C34 H34 SING N N 70 YMS C34 H35 SING N N 71 YMS N03 H36 SING N N 72 YMS N10 H37 SING N N 73 YMS N15 H38 SING N N 74 YMS O20 H39 SING N N 75 YMS S1 O1 DOUB N N 76 YMS S1 O2 DOUB N N 77 YMS S1 O3 SING N N 78 YMS O3 H19 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YMS SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OC1CCC(CC1)c1ccccc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" YMS InChI InChI 1.03 "InChI=1S/C26H39N3O8S/c1-16(2)14-21(24(31)28-22(25(32)38(34,35)36)15-19-12-13-27-23(19)30)29-26(33)37-20-10-8-18(9-11-20)17-6-4-3-5-7-17/h3-7,16,18-22,25,32H,8-15H2,1-2H3,(H,27,30)(H,28,31)(H,29,33)(H,34,35,36)/t18-,19-,20-,21-,22-,25+/m0/s1" YMS InChIKey InChI 1.03 GQBZOCZYIKJBAR-JACXQYEBSA-N YMS SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)O[C@@H]1CC[C@H](CC1)c2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" YMS SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)O[CH]1CC[CH](CC1)c2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" YMS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)c3ccccc3" YMS SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)c3ccccc3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YMS "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1r,4S)-4-phenylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid" YMS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-phenylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YMS "Create component" 2021-03-12 RCSB YMS "Initial release" 2021-03-24 RCSB ##