data_YN0 # _chem_comp.id YN0 _chem_comp.name "tert-butyl {(1R,4s)-4-[(5M)-2-[(2S)-1-(3-tert-butylphenyl)-6-oxopiperidin-2-yl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1H-benzimidazol-1-yl]cyclohexyl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H49 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-10 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 639.827 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YN0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FXN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YN0 C13 C1 C 0 1 Y N N N N N 12.965 -2.932 -12.310 4.351 -0.203 -1.851 C13 YN0 1 YN0 C15 C2 C 0 1 N N N N N N 12.701 -4.620 -14.170 5.223 1.539 -3.385 C15 YN0 2 YN0 C17 C3 C 0 1 N N N N N N 10.694 -3.587 -13.062 4.584 2.129 -1.043 C17 YN0 3 YN0 C20 C4 C 0 1 Y N N N N N 14.511 -2.128 -10.135 2.817 -2.504 -1.704 C20 YN0 4 YN0 C21 C5 C 0 1 N N N N N N 16.737 -0.136 -11.485 4.299 -3.209 1.234 C21 YN0 5 YN0 C22 C6 C 0 1 N N N N N N 18.224 0.157 -11.888 4.265 -3.886 2.574 C22 YN0 6 YN0 C24 C7 C 0 1 N N N N N N 18.663 -2.083 -12.550 1.973 -2.942 2.752 C24 YN0 7 YN0 C26 C8 C 0 1 Y N N N N N 17.834 -5.337 -10.018 -0.204 0.288 0.564 C26 YN0 8 YN0 C28 C9 C 0 1 N N N N N N 17.648 -5.982 -12.295 -0.978 -2.112 0.259 C28 YN0 9 YN0 C01 C10 C 0 1 N N N N N N 20.397 -4.307 -5.634 -0.075 5.102 -1.759 C01 YN0 10 YN0 C02 C11 C 0 1 Y N N N N N 19.387 -5.352 -5.152 0.101 5.423 -0.297 C02 YN0 11 YN0 C03 C12 C 0 1 Y N N N N N 18.417 -5.987 -5.878 0.145 4.532 0.737 C03 YN0 12 YN0 C04 C13 C 0 1 Y N N N N N 18.181 -5.757 -7.356 0.032 3.053 0.679 C04 YN0 13 YN0 C05 C14 C 0 1 Y N N N N N 17.985 -4.456 -7.809 1.112 2.263 1.045 C05 YN0 14 YN0 C06 C15 C 0 1 Y N N N N N 17.813 -4.258 -9.189 1.002 0.872 0.989 C06 YN0 15 YN0 C08 C16 C 0 1 Y N N N N N 17.498 -3.594 -11.224 1.267 -1.284 1.055 C08 YN0 16 YN0 C09 C17 C 0 1 N N S N N N 17.304 -2.597 -12.322 1.901 -2.636 1.257 C09 YN0 17 YN0 C11 C18 C 0 1 Y N N N N N 14.985 -2.057 -11.434 3.411 -1.991 -0.558 C11 YN0 18 YN0 C12 C19 C 0 1 Y N N N N N 14.237 -2.457 -12.516 4.179 -0.836 -0.636 C12 YN0 19 YN0 C14 C20 C 0 1 N N N N N N 12.131 -3.351 -13.537 5.190 1.046 -1.937 C14 YN0 20 YN0 C16 C21 C 0 1 N N N N N N 12.199 -2.215 -14.560 6.614 0.737 -1.471 C16 YN0 21 YN0 C18 C22 C 0 1 Y N N N N N 12.457 -2.997 -11.018 3.758 -0.717 -2.990 C18 YN0 22 YN0 C19 C23 C 0 1 Y N N N N N 13.224 -2.598 -9.929 2.992 -1.866 -2.916 C19 YN0 23 YN0 C23 C24 C 0 1 N N N N N N 18.662 -0.704 -12.983 2.818 -4.204 2.960 C23 YN0 24 YN0 C29 C25 C 0 1 N N N N N N 18.853 -5.770 -13.217 -1.387 -1.949 -1.207 C29 YN0 25 YN0 C30 C26 C 0 1 N N N N N N 18.900 -6.765 -14.382 -2.405 -3.030 -1.575 C30 YN0 26 YN0 C31 C27 C 0 1 N N N N N N 17.888 -7.907 -14.221 -3.641 -2.891 -0.683 C31 YN0 27 YN0 C33 C28 C 0 1 N N N N N N 18.877 -9.662 -15.673 -5.549 -1.377 -0.627 C33 YN0 28 YN0 C35 C29 C 0 1 N N N N N N 19.768 -11.347 -17.166 -7.515 -0.029 -0.516 C35 YN0 29 YN0 C36 C30 C 0 1 N N N N N N 19.057 -12.512 -16.460 -7.957 1.412 -0.779 C36 YN0 30 YN0 C37 C31 C 0 1 N N N N N N 21.225 -11.244 -16.740 -7.770 -0.382 0.950 C37 YN0 31 YN0 C38 C32 C 0 1 N N N N N N 19.755 -11.599 -18.669 -8.312 -0.978 -1.415 C38 YN0 32 YN0 C40 C33 C 0 1 N N N N N N 16.430 -7.459 -13.942 -3.232 -3.054 0.783 C40 YN0 33 YN0 C41 C34 C 0 1 N N N N N N 16.300 -6.326 -12.907 -2.214 -1.974 1.151 C41 YN0 34 YN0 C42 C35 C 0 1 Y N N N N N 18.029 -6.658 -9.563 -1.278 1.091 0.201 C42 YN0 35 YN0 C43 C36 C 0 1 Y N N N N N 18.216 -6.864 -8.214 -1.162 2.461 0.258 C43 YN0 36 YN0 C44 C37 C 0 1 Y N N N N N 17.733 -6.865 -5.043 0.324 5.356 1.884 C44 YN0 37 YN0 C45 C38 C 0 1 N N N N N N 16.576 -7.779 -5.425 0.442 4.900 3.315 C45 YN0 38 YN0 N07 N1 N 0 1 Y N N N N N 17.606 -3.172 -9.956 1.856 -0.145 1.273 N07 YN0 39 YN0 N10 N2 N 0 1 N N N N N N 16.302 -1.579 -11.728 3.235 -2.635 0.671 N10 YN0 40 YN0 N27 N3 N 0 1 Y N N N N N 17.618 -4.921 -11.272 -0.003 -1.078 0.612 N27 YN0 41 YN0 N32 N4 N 0 1 N N N N N N 17.915 -8.587 -15.508 -4.239 -1.568 -0.879 N32 YN0 42 YN0 N46 N5 N 0 1 Y N N N N N 18.295 -6.744 -3.824 0.368 6.581 1.449 N46 YN0 43 YN0 O25 O1 O 0 1 N N N N N N 16.002 0.697 -11.043 5.352 -3.179 0.633 O25 YN0 44 YN0 O34 O2 O 0 1 N N N N N N 19.069 -10.142 -16.973 -6.099 -0.162 -0.808 O34 YN0 45 YN0 O39 O3 O 0 1 N N N N N N 19.428 -10.102 -14.719 -6.234 -2.302 -0.237 O39 YN0 46 YN0 O47 O4 O 0 1 Y N N N N N 19.312 -5.827 -3.930 0.251 6.638 0.248 O47 YN0 47 YN0 H1 H1 H 0 1 N N N N N N 12.657 -5.444 -13.443 5.830 2.442 -3.448 H1 YN0 48 YN0 H2 H2 H 0 1 N N N N N N 12.110 -4.884 -15.059 5.654 0.767 -4.022 H2 YN0 49 YN0 H3 H3 H 0 1 N N N N N N 13.747 -4.445 -14.464 4.208 1.759 -3.718 H3 YN0 50 YN0 H4 H4 H 0 1 N N N N N N 10.679 -4.408 -12.329 3.569 2.350 -1.375 H4 YN0 51 YN0 H5 H5 H 0 1 N N N N N N 10.308 -2.670 -12.593 4.560 1.778 -0.012 H5 YN0 52 YN0 H6 H6 H 0 1 N N N N N N 10.062 -3.853 -13.923 5.191 3.033 -1.106 H6 YN0 53 YN0 H7 H7 H 0 1 N N N N N N 15.129 -1.825 -9.303 2.219 -3.401 -1.647 H7 YN0 54 YN0 H8 H8 H 0 1 N N N N N N 18.871 -0.017 -11.016 4.839 -4.811 2.527 H8 YN0 55 YN0 H9 H9 H 0 1 N N N N N N 18.308 1.207 -12.204 4.702 -3.227 3.324 H9 YN0 56 YN0 H10 H10 H 0 1 N N N N N N 19.148 -2.696 -13.324 2.437 -2.105 3.274 H10 YN0 57 YN0 H11 H11 H 0 1 N N N N N N 19.232 -2.159 -11.612 0.967 -3.103 3.142 H11 YN0 58 YN0 H12 H12 H 0 1 N N N N N N 17.914 -6.888 -11.731 -0.533 -3.096 0.405 H12 YN0 59 YN0 H13 H13 H 0 1 N N N N N N 21.050 -4.015 -4.799 -0.064 6.026 -2.337 H13 YN0 60 YN0 H14 H14 H 0 1 N N N N N N 21.006 -4.733 -6.445 0.738 4.457 -2.090 H14 YN0 61 YN0 H15 H15 H 0 1 N N N N N N 19.860 -3.422 -6.005 -1.027 4.593 -1.908 H15 YN0 62 YN0 H16 H16 H 0 1 N N N N N N 17.966 -3.624 -7.121 2.034 2.721 1.370 H16 YN0 63 YN0 H17 H17 H 0 1 N N N N N N 16.889 -3.069 -13.225 1.292 -3.394 0.764 H17 YN0 64 YN0 H18 H18 H 0 1 N N N N N N 14.644 -2.398 -13.515 4.643 -0.435 0.253 H18 YN0 65 YN0 H19 H19 H 0 1 N N N N N N 11.791 -1.295 -14.115 7.220 1.640 -1.533 H19 YN0 66 YN0 H20 H20 H 0 1 N N N N N N 13.246 -2.047 -14.853 6.590 0.385 -0.439 H20 YN0 67 YN0 H21 H21 H 0 1 N N N N N N 11.609 -2.486 -15.448 7.045 -0.035 -2.108 H21 YN0 68 YN0 H22 H22 H 0 1 N N N N N N 11.453 -3.362 -10.858 3.894 -0.220 -3.939 H22 YN0 69 YN0 H23 H23 H 0 1 N N N N N N 12.819 -2.654 -8.929 2.530 -2.265 -3.807 H23 YN0 70 YN0 H24 H24 H 0 1 N N N N N N 19.679 -0.417 -13.290 2.438 -5.008 2.329 H24 YN0 71 YN0 H25 H25 H 0 1 N N N N N N 17.976 -0.589 -13.835 2.776 -4.506 4.006 H25 YN0 72 YN0 H26 H26 H 0 1 N N N N N N 19.772 -5.882 -12.623 -1.832 -0.965 -1.353 H26 YN0 73 YN0 H27 H27 H 0 1 N N N N N N 18.804 -4.751 -13.628 -0.507 -2.048 -1.842 H27 YN0 74 YN0 H28 H28 H 0 1 N N N N N N 19.911 -7.195 -14.438 -2.696 -2.914 -2.619 H28 YN0 75 YN0 H29 H29 H 0 1 N N N N N N 18.678 -6.226 -15.315 -1.960 -4.014 -1.429 H29 YN0 76 YN0 H30 H30 H 0 1 N N N N N N 18.221 -8.582 -13.419 -4.367 -3.661 -0.946 H30 YN0 77 YN0 H31 H31 H 0 1 N N N N N N 19.061 -12.340 -15.374 -7.776 1.664 -1.824 H31 YN0 78 YN0 H32 H32 H 0 1 N N N N N N 18.019 -12.578 -16.817 -9.020 1.512 -0.560 H32 YN0 79 YN0 H33 H33 H 0 1 N N N N N N 19.582 -13.452 -16.684 -7.390 2.088 -0.139 H33 YN0 80 YN0 H34 H34 H 0 1 N N N N N N 21.279 -11.061 -15.657 -7.202 0.294 1.590 H34 YN0 81 YN0 H35 H35 H 0 1 N N N N N N 21.744 -12.184 -16.980 -8.833 -0.282 1.169 H35 YN0 82 YN0 H36 H36 H 0 1 N N N N N N 21.706 -10.412 -17.276 -7.455 -1.408 1.137 H36 YN0 83 YN0 H37 H37 H 0 1 N N N N N N 20.290 -12.535 -18.889 -7.997 -2.004 -1.228 H37 YN0 84 YN0 H38 H38 H 0 1 N N N N N N 18.715 -11.681 -19.018 -9.375 -0.878 -1.196 H38 YN0 85 YN0 H39 H39 H 0 1 N N N N N N 20.250 -10.763 -19.185 -8.130 -0.726 -2.460 H39 YN0 86 YN0 H40 H40 H 0 1 N N N N N N 15.989 -7.113 -14.889 -4.112 -2.955 1.418 H40 YN0 87 YN0 H41 H41 H 0 1 N N N N N N 15.867 -8.329 -13.572 -2.787 -4.038 0.928 H41 YN0 88 YN0 H42 H42 H 0 1 N N N N N N 15.893 -5.432 -13.403 -1.923 -2.089 2.195 H42 YN0 89 YN0 H43 H43 H 0 1 N N N N N N 15.615 -6.647 -12.108 -2.659 -0.989 1.005 H43 YN0 90 YN0 H44 H44 H 0 1 N N N N N N 18.032 -7.487 -10.255 -2.203 0.640 -0.126 H44 YN0 91 YN0 H45 H45 H 0 1 N N N N N N 18.386 -7.857 -7.826 -1.999 3.083 -0.025 H45 YN0 92 YN0 H46 H46 H 0 1 N N N N N N 16.249 -8.347 -4.541 1.490 4.716 3.553 H46 YN0 93 YN0 H47 H47 H 0 1 N N N N N N 15.739 -7.173 -5.801 0.049 5.673 3.976 H47 YN0 94 YN0 H48 H48 H 0 1 N N N N N N 16.904 -8.478 -6.209 -0.128 3.981 3.452 H48 YN0 95 YN0 H49 H49 H 0 1 N N N N N N 17.296 -8.324 -16.248 -3.692 -0.830 -1.190 H49 YN0 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YN0 C38 C35 SING N N 1 YN0 C35 O34 SING N N 2 YN0 C35 C37 SING N N 3 YN0 C35 C36 SING N N 4 YN0 O34 C33 SING N N 5 YN0 C33 N32 SING N N 6 YN0 C33 O39 DOUB N N 7 YN0 N32 C31 SING N N 8 YN0 C16 C14 SING N N 9 YN0 C30 C31 SING N N 10 YN0 C30 C29 SING N N 11 YN0 C31 C40 SING N N 12 YN0 C15 C14 SING N N 13 YN0 C40 C41 SING N N 14 YN0 C14 C17 SING N N 15 YN0 C14 C13 SING N N 16 YN0 C29 C28 SING N N 17 YN0 C23 C24 SING N N 18 YN0 C23 C22 SING N N 19 YN0 C41 C28 SING N N 20 YN0 C24 C09 SING N N 21 YN0 C12 C13 DOUB Y N 22 YN0 C12 C11 SING Y N 23 YN0 C09 N10 SING N N 24 YN0 C09 C08 SING N N 25 YN0 C13 C18 SING Y N 26 YN0 C28 N27 SING N N 27 YN0 C22 C21 SING N N 28 YN0 N10 C21 SING N N 29 YN0 N10 C11 SING N N 30 YN0 C21 O25 DOUB N N 31 YN0 C11 C20 DOUB Y N 32 YN0 N27 C08 SING Y N 33 YN0 N27 C26 SING Y N 34 YN0 C08 N07 DOUB Y N 35 YN0 C18 C19 DOUB Y N 36 YN0 C20 C19 SING Y N 37 YN0 C26 C42 DOUB Y N 38 YN0 C26 C06 SING Y N 39 YN0 N07 C06 SING Y N 40 YN0 C42 C43 SING Y N 41 YN0 C06 C05 DOUB Y N 42 YN0 C43 C04 DOUB Y N 43 YN0 C05 C04 SING Y N 44 YN0 C04 C03 SING N N 45 YN0 C03 C02 DOUB Y N 46 YN0 C03 C44 SING Y N 47 YN0 C01 C02 SING N N 48 YN0 C45 C44 SING N N 49 YN0 C02 O47 SING Y N 50 YN0 C44 N46 DOUB Y N 51 YN0 O47 N46 SING Y N 52 YN0 C15 H1 SING N N 53 YN0 C15 H2 SING N N 54 YN0 C15 H3 SING N N 55 YN0 C17 H4 SING N N 56 YN0 C17 H5 SING N N 57 YN0 C17 H6 SING N N 58 YN0 C20 H7 SING N N 59 YN0 C22 H8 SING N N 60 YN0 C22 H9 SING N N 61 YN0 C24 H10 SING N N 62 YN0 C24 H11 SING N N 63 YN0 C28 H12 SING N N 64 YN0 C01 H13 SING N N 65 YN0 C01 H14 SING N N 66 YN0 C01 H15 SING N N 67 YN0 C05 H16 SING N N 68 YN0 C09 H17 SING N N 69 YN0 C12 H18 SING N N 70 YN0 C16 H19 SING N N 71 YN0 C16 H20 SING N N 72 YN0 C16 H21 SING N N 73 YN0 C18 H22 SING N N 74 YN0 C19 H23 SING N N 75 YN0 C23 H24 SING N N 76 YN0 C23 H25 SING N N 77 YN0 C29 H26 SING N N 78 YN0 C29 H27 SING N N 79 YN0 C30 H28 SING N N 80 YN0 C30 H29 SING N N 81 YN0 C31 H30 SING N N 82 YN0 C36 H31 SING N N 83 YN0 C36 H32 SING N N 84 YN0 C36 H33 SING N N 85 YN0 C37 H34 SING N N 86 YN0 C37 H35 SING N N 87 YN0 C37 H36 SING N N 88 YN0 C38 H37 SING N N 89 YN0 C38 H38 SING N N 90 YN0 C38 H39 SING N N 91 YN0 C40 H40 SING N N 92 YN0 C40 H41 SING N N 93 YN0 C41 H42 SING N N 94 YN0 C41 H43 SING N N 95 YN0 C42 H44 SING N N 96 YN0 C43 H45 SING N N 97 YN0 C45 H46 SING N N 98 YN0 C45 H47 SING N N 99 YN0 C45 H48 SING N N 100 YN0 N32 H49 SING N N 101 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YN0 SMILES ACDLabs 12.01 "Cc1noc(C)c1c1cc2nc(C3CCCC(=O)N3c3cc(ccc3)C(C)(C)C)n(C3CCC(NC(=O)OC(C)(C)C)CC3)c2cc1" YN0 InChI InChI 1.06 "InChI=1S/C38H49N5O4/c1-23-34(24(2)47-41-23)25-15-20-31-30(21-25)40-35(43(31)28-18-16-27(17-19-28)39-36(45)46-38(6,7)8)32-13-10-14-33(44)42(32)29-12-9-11-26(22-29)37(3,4)5/h9,11-12,15,20-22,27-28,32H,10,13-14,16-19H2,1-8H3,(H,39,45)/t27-,28+,32-/m0/s1" YN0 InChIKey InChI 1.06 XCKDYTZQUKRVJL-NGKQEFFVSA-N YN0 SMILES_CANONICAL CACTVS 3.385 "Cc1onc(C)c1c2ccc3n([C@@H]4CC[C@@H](CC4)NC(=O)OC(C)(C)C)c(nc3c2)[C@@H]5CCCC(=O)N5c6cccc(c6)C(C)(C)C" YN0 SMILES CACTVS 3.385 "Cc1onc(C)c1c2ccc3n([CH]4CC[CH](CC4)NC(=O)OC(C)(C)C)c(nc3c2)[CH]5CCCC(=O)N5c6cccc(c6)C(C)(C)C" YN0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3C4CCC(CC4)NC(=O)OC(C)(C)C)[C@@H]5CCCC(=O)N5c6cccc(c6)C(C)(C)C" YN0 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3C4CCC(CC4)NC(=O)OC(C)(C)C)C5CCCC(=O)N5c6cccc(c6)C(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YN0 "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl {(1R,4s)-4-[(5M)-2-[(2S)-1-(3-tert-butylphenyl)-6-oxopiperidin-2-yl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1H-benzimidazol-1-yl]cyclohexyl}carbamate" YN0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[4-[2-[(2~{S})-1-(3-~{tert}-butylphenyl)-6-oxidanylidene-piperidin-2-yl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]cyclohexyl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YN0 "Create component" 2023-02-10 RCSB YN0 "Initial release" 2024-02-07 RCSB #