data_YNI # _chem_comp.id YNI _chem_comp.name "5-tert-butyl-2-chloro-4-{[(5M)-5-(6-methoxypyrimidin-4-yl)-1-methyl-1H-imidazol-2-yl]methoxy}benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 411.885 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YNI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G3V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YNI C10 C1 C 0 1 N N N N N N -11.330 9.356 44.772 -2.048 2.756 1.593 C10 YNI 1 YNI O14 O1 O 0 1 N N N N N N -13.041 7.422 45.974 -1.218 0.155 0.608 O14 YNI 2 YNI C15 C2 C 0 1 N N N N N N -13.557 6.977 47.276 -0.549 -1.087 0.836 C15 YNI 3 YNI C16 C3 C 0 1 Y N N N N N -13.937 8.191 47.971 0.879 -0.822 1.235 C16 YNI 4 YNI C18 C4 C 0 1 Y N N N N N -15.156 9.681 49.009 2.626 -0.444 2.447 C18 YNI 5 YNI C19 C5 C 0 1 Y N N N N N -13.808 10.043 49.224 3.044 -0.478 1.151 C19 YNI 6 YNI C21 C6 C 0 1 Y N N N N N -13.320 11.136 50.010 4.424 -0.291 0.662 C21 YNI 7 YNI C22 C7 C 0 1 Y N N N N N -13.985 12.293 50.172 4.687 -0.212 -0.707 C22 YNI 8 YNI C23 C8 C 0 1 Y N N N N N -13.261 13.255 50.879 6.005 -0.035 -1.115 C23 YNI 9 YNI C25 C9 C 0 1 Y N N N N N -11.455 11.874 51.149 6.674 -0.027 1.091 C25 YNI 10 YNI C27 C10 C 0 1 N N N N N N -11.640 9.143 48.433 1.875 -0.849 -1.071 C27 YNI 11 YNI C1 C11 C 0 1 Y N N N N N -11.255 5.976 43.364 -4.555 1.210 -0.373 C1 YNI 12 YNI C2 C12 C 0 1 Y N N N N N -11.248 4.633 43.661 -5.187 -0.028 -0.516 C2 YNI 13 YNI C3 C13 C 0 1 Y N N N N N -11.874 4.212 44.848 -4.471 -1.206 -0.277 C3 YNI 14 YNI C4 C14 C 0 1 Y N N N N N -12.467 5.112 45.657 -3.146 -1.139 0.098 C4 YNI 15 YNI C5 C15 C 0 1 Y N N N N N -12.433 6.462 45.269 -2.523 0.095 0.238 C5 YNI 16 YNI C6 C16 C 0 1 Y N N N N N -11.809 6.891 44.126 -3.231 1.267 0.002 C6 YNI 17 YNI C7 C17 C 0 1 N N N N N N -11.795 8.318 43.692 -2.549 2.602 0.156 C7 YNI 18 YNI C8 C18 C 0 1 N N N N N N -10.852 8.620 42.494 -3.543 3.721 -0.160 C8 YNI 19 YNI C9 C19 C 0 1 N N N N N N -13.281 8.631 43.150 -1.364 2.683 -0.809 C9 YNI 20 YNI CL11 CL1 CL 0 0 N N N N N N -12.009 2.536 45.250 -5.249 -2.748 -0.452 CL11 YNI 21 YNI C12 C20 C 0 1 N N N N N N -10.675 3.747 42.683 -6.564 -0.091 -0.905 C12 YNI 22 YNI N13 N1 N 0 1 N N N N N N -10.203 2.935 41.910 -7.656 -0.141 -1.214 N13 YNI 23 YNI N17 N2 N 0 1 Y N N N N N -15.257 8.525 48.220 1.307 -0.659 2.459 N17 YNI 24 YNI N20 N3 N 0 1 Y N N N N N -13.039 9.133 48.572 1.923 -0.722 0.387 N20 YNI 25 YNI N24 N4 N 0 1 Y N N N N N -11.991 13.076 51.356 6.960 0.052 -0.194 N24 YNI 26 YNI N26 N5 N 0 1 Y N N N N N -12.048 10.888 50.518 5.441 -0.189 1.522 N26 YNI 27 YNI O28 O2 O 0 1 N N N N N N -13.922 14.432 51.059 6.311 0.048 -2.432 O28 YNI 28 YNI C29 C21 C 0 1 N N N N N N -13.304 15.525 51.777 7.688 0.230 -2.768 C29 YNI 29 YNI H39 H1 H 0 1 N N N N N N -11.359 10.369 44.344 -1.340 1.958 1.819 H39 YNI 30 YNI H40 H2 H 0 1 N N N N N N -12.002 9.306 45.642 -1.555 3.721 1.705 H40 YNI 31 YNI H38 H3 H 0 1 N N N N N N -10.303 9.121 45.088 -2.892 2.697 2.281 H38 YNI 32 YNI H42 H4 H 0 1 N N N N N N -14.430 6.321 47.141 -1.055 -1.631 1.634 H42 YNI 33 YNI H41 H5 H 0 1 N N N N N N -12.778 6.440 47.836 -0.567 -1.682 -0.077 H41 YNI 34 YNI H43 H6 H 0 1 N N N N N N -16.002 10.225 49.402 3.250 -0.274 3.312 H43 YNI 35 YNI H44 H7 H 0 1 N N N N N N -14.982 12.462 49.792 3.889 -0.287 -1.431 H44 YNI 36 YNI H45 H8 H 0 1 N N N N N N -10.459 11.698 51.528 7.475 0.052 1.811 H45 YNI 37 YNI H46 H9 H 0 1 N N N N N N -11.220 9.982 49.008 1.830 0.144 -1.521 H46 YNI 38 YNI H48 H10 H 0 1 N N N N N N -11.227 8.196 48.811 2.769 -1.365 -1.421 H48 YNI 39 YNI H47 H11 H 0 1 N N N N N N -11.378 9.259 47.371 0.991 -1.418 -1.358 H47 YNI 40 YNI H30 H12 H 0 1 N N N N N N -10.777 6.297 42.450 -5.103 2.122 -0.561 H30 YNI 41 YNI H31 H13 H 0 1 N N N N N N -12.952 4.806 46.572 -2.591 -2.047 0.282 H31 YNI 42 YNI H32 H14 H 0 1 N N N N N N -10.906 9.690 42.245 -4.387 3.663 0.527 H32 YNI 43 YNI H34 H15 H 0 1 N N N N N N -9.819 8.359 42.766 -3.049 4.687 -0.049 H34 YNI 44 YNI H33 H16 H 0 1 N N N N N N -11.164 8.025 41.623 -3.900 3.612 -1.184 H33 YNI 45 YNI H35 H17 H 0 1 N N N N N N -13.336 9.676 42.812 -1.721 2.574 -1.833 H35 YNI 46 YNI H36 H18 H 0 1 N N N N N N -13.513 7.961 42.309 -0.871 3.649 -0.697 H36 YNI 47 YNI H37 H19 H 0 1 N N N N N N -14.008 8.468 43.959 -0.657 1.886 -0.583 H37 YNI 48 YNI H50 H20 H 0 1 N N N N N N -13.996 16.379 51.812 8.051 1.157 -2.324 H50 YNI 49 YNI H49 H21 H 0 1 N N N N N N -13.067 15.203 52.802 8.270 -0.609 -2.384 H49 YNI 50 YNI H51 H22 H 0 1 N N N N N N -12.379 15.824 51.263 7.795 0.279 -3.852 H51 YNI 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YNI C1 C2 DOUB Y N 1 YNI C1 C6 SING Y N 2 YNI C2 C3 SING Y N 3 YNI C2 C12 SING N N 4 YNI C3 C4 DOUB Y N 5 YNI C3 CL11 SING N N 6 YNI C4 C5 SING Y N 7 YNI C5 C6 DOUB Y N 8 YNI C5 O14 SING N N 9 YNI C6 C7 SING N N 10 YNI C7 C8 SING N N 11 YNI C7 C9 SING N N 12 YNI C7 C10 SING N N 13 YNI C12 N13 TRIP N N 14 YNI O14 C15 SING N N 15 YNI C15 C16 SING N N 16 YNI C16 N17 DOUB Y N 17 YNI C16 N20 SING Y N 18 YNI N17 C18 SING Y N 19 YNI C18 C19 DOUB Y N 20 YNI C19 N20 SING Y N 21 YNI C19 C21 SING N N 22 YNI N20 C27 SING N N 23 YNI C21 C22 DOUB Y N 24 YNI C21 N26 SING Y N 25 YNI C22 C23 SING Y N 26 YNI C23 N24 DOUB Y N 27 YNI C23 O28 SING N N 28 YNI N24 C25 SING Y N 29 YNI C25 N26 DOUB Y N 30 YNI O28 C29 SING N N 31 YNI C10 H39 SING N N 32 YNI C10 H40 SING N N 33 YNI C10 H38 SING N N 34 YNI C15 H42 SING N N 35 YNI C15 H41 SING N N 36 YNI C18 H43 SING N N 37 YNI C22 H44 SING N N 38 YNI C25 H45 SING N N 39 YNI C27 H46 SING N N 40 YNI C27 H48 SING N N 41 YNI C27 H47 SING N N 42 YNI C1 H30 SING N N 43 YNI C4 H31 SING N N 44 YNI C8 H32 SING N N 45 YNI C8 H34 SING N N 46 YNI C8 H33 SING N N 47 YNI C9 H35 SING N N 48 YNI C9 H36 SING N N 49 YNI C9 H37 SING N N 50 YNI C29 H50 SING N N 51 YNI C29 H49 SING N N 52 YNI C29 H51 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YNI SMILES ACDLabs 12.01 "Cn1c(cnc1COc1cc(Cl)c(C#N)cc1C(C)(C)C)c1cc(OC)ncn1" YNI InChI InChI 1.06 "InChI=1S/C21H22ClN5O2/c1-21(2,3)14-6-13(9-23)15(22)7-18(14)29-11-19-24-10-17(27(19)4)16-8-20(28-5)26-12-25-16/h6-8,10,12H,11H2,1-5H3" YNI InChIKey InChI 1.06 MHARPWJFOLFXQR-UHFFFAOYSA-N YNI SMILES_CANONICAL CACTVS 3.385 "COc1cc(ncn1)c2cnc(COc3cc(Cl)c(cc3C(C)(C)C)C#N)n2C" YNI SMILES CACTVS 3.385 "COc1cc(ncn1)c2cnc(COc3cc(Cl)c(cc3C(C)(C)C)C#N)n2C" YNI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1cc(c(cc1OCc2ncc(n2C)c3cc(ncn3)OC)Cl)C#N" YNI SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1cc(c(cc1OCc2ncc(n2C)c3cc(ncn3)OC)Cl)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YNI "SYSTEMATIC NAME" ACDLabs 12.01 "5-tert-butyl-2-chloro-4-{[(5M)-5-(6-methoxypyrimidin-4-yl)-1-methyl-1H-imidazol-2-yl]methoxy}benzonitrile" YNI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-~{tert}-butyl-2-chloranyl-4-[[5-(6-methoxypyrimidin-4-yl)-1-methyl-imidazol-2-yl]methoxy]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YNI "Create component" 2023-06-19 RCSB YNI "Initial release" 2024-12-18 RCSB #